Wall clock time and date at job start Tue Mar 31 2020 17:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.52999 * 109.47299 * 120.00442 * 2 1 3 5 5 C 1.50697 * 109.47377 * 174.99879 * 4 2 1 6 6 N 1.31800 * 119.03491 * 89.99488 * 5 4 2 7 7 C 1.32252 * 120.90141 * 180.02562 * 6 5 4 8 8 C 1.39290 * 119.01078 * 359.97438 * 7 6 5 9 9 N 1.39780 * 120.87832 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00045 * 212.41785 * 9 8 7 11 11 O 1.21380 * 119.99959 * 5.26367 * 10 9 8 12 12 C 1.49349 * 119.99939 * 185.26791 * 10 9 8 13 13 O 1.21358 * 120.00033 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99939 * 179.97438 * 12 10 9 15 15 C 1.46500 * 119.99964 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47110 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47124 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00122 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00025 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47402 * 89.99710 * 22 20 18 24 24 H 1.48510 * 109.47103 * 210.00172 * 22 20 18 25 25 H 1.48504 * 109.46901 * 329.99838 * 22 20 18 26 26 C 1.39286 * 118.24445 * 359.97438 * 8 7 6 27 27 N 1.31806 * 119.03147 * 269.97683 * 5 4 2 28 28 H 1.08999 * 109.46746 * 299.99982 * 1 2 3 29 29 H 1.08994 * 109.47384 * 59.99709 * 1 2 3 30 30 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46806 * 240.00053 * 2 1 3 32 32 H 1.08997 * 109.46918 * 299.99974 * 3 2 1 33 33 H 1.08999 * 109.47171 * 60.00279 * 3 2 1 34 34 H 1.09002 * 109.47241 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47544 * 54.99243 * 4 2 1 36 36 H 1.09003 * 109.46844 * 294.99208 * 4 2 1 37 37 H 1.08011 * 120.49710 * 179.97438 * 7 6 5 38 38 H 0.97000 * 119.99843 * 32.41953 * 9 8 7 39 39 H 0.97001 * 119.99800 * 0.02562 * 14 12 10 40 40 H 1.08998 * 109.47459 * 300.00254 * 15 14 12 41 41 H 1.09005 * 109.46932 * 60.00240 * 15 14 12 42 42 H 1.09006 * 109.47111 * 300.00161 * 16 15 14 43 43 H 1.08997 * 109.47153 * 60.00088 * 16 15 14 44 44 H 1.08993 * 109.46890 * 300.00002 * 17 16 15 45 45 H 1.09005 * 109.47098 * 60.00196 * 17 16 15 46 46 H 0.97007 * 120.00101 * 180.02562 * 21 20 18 47 47 H 1.08009 * 120.49916 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.2741 0.1355 1.7082 7 6 5.5950 0.0787 1.6751 8 6 6.2092 -1.0214 1.0811 9 7 7.6022 -1.1218 1.0252 10 6 8.1921 -1.7376 -0.0186 11 8 7.5218 -2.1202 -0.9553 12 6 9.6705 -1.9492 -0.0224 13 8 10.3408 -1.5663 0.9140 14 7 10.2603 -2.5654 -1.0659 15 6 11.7106 -2.7725 -1.0699 16 6 12.1199 -3.4890 -2.3583 17 6 13.6345 -3.7059 -2.3623 18 6 14.0376 -4.4111 -3.6316 19 1 13.2885 -4.6783 -4.3622 20 6 15.3627 -4.7161 -3.8597 21 7 15.7145 -5.3320 -4.9672 22 14 16.6582 -4.2559 -2.5950 23 1 16.8252 -5.3712 -1.6290 24 1 17.9497 -3.9974 -3.2809 25 1 16.2294 -3.0330 -1.8698 26 6 5.3985 -2.0193 0.5454 27 7 4.0846 -1.8866 0.6185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6053 -1.7199 1.2952 36 1 1.7518 -0.1583 2.1369 37 1 6.1887 0.8734 2.1024 38 1 8.1444 -0.7483 1.7375 39 1 9.7246 -2.8712 -1.8145 40 1 12.2155 -1.8082 -1.0139 41 1 11.9931 -3.3810 -0.2108 42 1 11.6149 -4.4535 -2.4138 43 1 11.8373 -2.8810 -3.2177 44 1 14.1396 -2.7417 -2.3065 45 1 13.9167 -4.3142 -1.5029 46 1 16.6468 -5.5469 -5.1275 47 1 5.8362 -2.8880 0.0760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351526917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:55 Heat of formation + Delta-G solvation = -63.783515 kcal Electronic energy + Delta-G solvation = -27018.020720 eV Core-core repulsion = 23006.519788 eV Total energy + Delta-G solvation = -4011.500933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.72491 -41.66098 -39.92164 -37.68365 -37.22747 -36.34589 -35.16683 -34.87261 -33.32653 -32.17046 -29.48703 -28.53854 -27.99586 -26.25139 -25.97629 -24.47003 -23.36390 -22.30289 -21.59951 -21.12145 -20.15623 -18.99474 -18.81831 -18.39575 -17.91845 -17.47179 -17.24060 -16.67124 -16.34490 -16.14794 -16.04468 -15.80860 -15.19426 -15.03925 -14.94449 -14.77760 -14.70944 -14.47910 -13.82149 -13.65054 -13.51838 -13.12803 -13.04300 -12.84157 -12.75107 -12.70663 -12.62694 -12.49949 -12.04806 -11.90494 -11.78521 -11.77015 -11.73077 -11.60559 -11.57994 -11.33405 -10.95885 -10.75245 -10.36618 -10.34070 -9.67150 -8.28200 -6.32863 -0.53232 -0.07320 0.26643 0.98272 1.38922 1.40551 1.52017 1.90499 2.34332 2.37703 2.58480 2.89220 3.06089 3.07864 3.15621 3.36719 3.70118 3.93317 3.96869 4.00460 4.03555 4.17765 4.28697 4.47656 4.53934 4.61438 4.70383 4.79309 4.80268 4.85052 4.86671 4.92847 5.01611 5.01899 5.09015 5.12752 5.23269 5.33284 5.43851 5.46170 5.46360 5.55907 5.59801 5.66722 5.81606 6.13725 6.28011 6.45342 6.73751 6.76210 6.96161 7.32152 8.88358 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.001600 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.802065 B =17496.429599 C =18045.117549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.045 4.045 5 C 0.297 3.703 6 N -0.500 5.500 7 C 0.144 3.856 8 C 0.031 3.969 9 N -0.619 5.619 10 C 0.518 3.482 11 O -0.515 6.515 12 C 0.512 3.488 13 O -0.536 6.536 14 N -0.684 5.684 15 C 0.124 3.876 16 C -0.106 4.106 17 C -0.011 4.011 18 C -0.534 4.534 19 H 0.034 0.966 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.950 3.050 23 H -0.267 1.267 24 H -0.287 1.287 25 H -0.242 1.242 26 C 0.139 3.861 27 N -0.516 5.516 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.209 0.791 38 H 0.439 0.561 39 H 0.420 0.580 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.265 0.735 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.516 14.195 18.052 36.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.084 4.084 5 C 0.030 3.970 6 N -0.213 5.213 7 C -0.026 4.026 8 C -0.068 4.068 9 N -0.269 5.269 10 C 0.300 3.700 11 O -0.390 6.390 12 C 0.292 3.708 13 O -0.414 6.414 14 N -0.337 5.337 15 C 0.001 3.999 16 C -0.144 4.144 17 C -0.049 4.049 18 C -0.572 4.572 19 H 0.052 0.948 20 C -0.194 4.194 21 N -0.593 5.593 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.213 1.213 25 H -0.165 1.165 26 C -0.029 4.029 27 N -0.229 5.229 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.226 0.774 38 H 0.281 0.719 39 H 0.257 0.743 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.296 14.161 17.988 37.180 hybrid contribution 2.092 -0.434 -0.381 2.170 sum -27.204 13.727 17.607 35.192 Atomic orbital electron populations 1.21782 0.92771 1.02545 1.02722 1.21027 0.97295 0.96052 0.96285 1.21815 1.00058 0.95739 1.02285 1.20620 0.83991 1.03280 1.00535 1.23672 0.99073 0.85211 0.89032 1.68378 1.06135 1.28391 1.18386 1.23729 0.90749 0.94389 0.93691 1.19550 0.84457 0.98000 1.04843 1.42790 1.04210 1.55757 1.24093 1.20287 0.88827 0.78497 0.82357 1.90819 1.65315 1.48274 1.34547 1.19728 0.87650 0.79900 0.83557 1.90790 1.65130 1.50313 1.35146 1.45883 1.09826 1.56641 1.21313 1.21594 0.77800 1.01280 0.99195 1.21533 0.97029 1.00101 0.95732 1.19460 0.93558 0.96572 0.95307 1.21494 0.93395 1.37597 1.04707 0.94800 1.26029 1.01355 0.94486 0.97511 1.70075 1.18282 1.43168 1.27785 0.85658 0.77634 0.80305 0.79054 1.19237 1.21329 1.16537 1.23440 0.88568 0.97227 0.93665 1.68335 1.12401 1.25283 1.16930 0.91368 0.92131 0.91968 0.92656 0.92554 0.91382 0.94535 0.88582 0.87817 0.77444 0.71936 0.74291 0.90571 0.90518 0.91785 0.91829 0.95584 0.95699 0.92570 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 71.98 0.66 -0.52 16 2 C -0.09 -1.08 2.91 -10.80 -0.03 -1.11 16 3 C -0.14 -1.82 8.91 71.98 0.64 -1.18 16 4 C -0.05 -0.58 5.12 29.85 0.15 -0.43 16 5 C 0.30 5.36 6.25 138.74 0.87 6.23 16 6 N -0.50 -8.25 9.25 -187.33 -1.73 -9.98 16 7 C 0.14 1.90 11.26 84.88 0.96 2.86 16 8 C 0.03 0.50 6.33 38.38 0.24 0.74 16 9 N -0.62 -9.15 5.35 -304.25 -1.63 -10.78 16 10 C 0.52 10.39 7.66 87.24 0.67 11.06 16 11 O -0.52 -12.45 14.17 -3.34 -0.05 -12.50 16 12 C 0.51 11.68 7.89 87.24 0.69 12.37 16 13 O -0.54 -14.01 16.48 -3.27 -0.05 -14.07 16 14 N -0.68 -16.12 5.55 -464.51 -2.58 -18.70 16 15 C 0.12 3.38 5.67 86.38 0.49 3.87 16 16 C -0.11 -3.58 5.27 30.60 0.16 -3.42 16 17 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 18 C -0.53 -29.72 9.66 25.60 0.25 -29.48 16 19 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 20 C 0.00 0.16 5.47 84.65 0.46 0.63 16 21 N -0.95 -59.09 13.96 21.44 0.30 -58.79 16 22 Si 0.95 43.03 27.47 68.60 1.88 44.91 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 26 C 0.14 2.84 9.94 84.88 0.84 3.68 16 27 N -0.52 -10.95 10.32 -187.34 -1.93 -12.88 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.04 0.60 6.66 -2.39 -0.02 0.58 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.44 4.50 8.30 -92.71 -0.77 3.73 16 39 H 0.42 9.08 7.94 -92.71 -0.74 8.34 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.03 1.09 7.20 -2.39 -0.02 1.08 16 45 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 46 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.17 3.63 6.47 -2.91 -0.02 3.61 16 Total: -1.00 -70.90 395.08 0.82 -70.07 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.56 Total: 17.76 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 7.17 Total: 4.95 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -7.57 Total: -111.13 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.10 Total: -26.56 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -70.90 0.82 -70.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351526917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.291 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds