Wall clock time and date at job start Tue Mar 31 2020 19:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46945 * 2 1 4 4 N 1.46503 * 109.47145 * 119.99845 * 2 1 3 5 5 N 1.40003 * 126.08770 * 303.49542 * 4 2 1 6 6 C 1.31109 * 108.47477 * 180.02562 * 5 4 2 7 7 C 1.39675 * 108.34109 * 0.02562 * 6 5 4 8 8 C 1.35783 * 126.09188 * 123.51678 * 4 2 1 9 9 N 1.39196 * 126.26190 * 359.97438 * 8 4 2 10 10 C 1.34784 * 120.00110 * 206.15694 * 9 8 4 11 11 O 1.21385 * 119.99811 * 5.42541 * 10 9 8 12 12 C 1.49303 * 119.99968 * 185.42538 * 10 9 8 13 13 O 1.21374 * 120.00310 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00329 * 180.02562 * 12 10 9 15 15 C 1.46495 * 120.00558 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47222 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47245 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99386 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99802 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47222 * 89.99726 * 21 19 17 23 23 H 1.48506 * 109.46772 * 209.99901 * 21 19 17 24 24 H 1.48499 * 109.47143 * 329.99769 * 21 19 17 25 25 C 1.51278 * 109.61217 * 179.97438 * 7 6 5 26 26 C 1.54351 * 105.19742 * 342.78809 * 25 7 6 27 27 C 1.51653 * 142.07956 * 179.77238 * 6 5 4 28 28 H 1.09000 * 109.47491 * 300.00082 * 1 2 3 29 29 H 1.09004 * 109.47388 * 60.00435 * 1 2 3 30 30 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46983 * 239.99943 * 2 1 3 32 32 H 1.09004 * 109.46488 * 299.99474 * 3 2 1 33 33 H 1.08991 * 109.47028 * 59.99861 * 3 2 1 34 34 H 1.09002 * 109.46866 * 180.02562 * 3 2 1 35 35 H 0.97006 * 120.00292 * 26.16237 * 9 8 4 36 36 H 0.97002 * 119.99441 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.46808 * 299.99885 * 15 14 12 38 38 H 1.09003 * 109.47332 * 59.99684 * 15 14 12 39 39 H 1.09001 * 109.47320 * 299.99798 * 16 15 14 40 40 H 1.09003 * 109.47040 * 59.99732 * 16 15 14 41 41 H 0.96992 * 120.00165 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.30032 * 223.85778 * 25 7 6 43 43 H 1.09005 * 110.38166 * 101.75765 * 25 7 6 44 44 H 1.08991 * 110.77465 * 144.80403 * 26 25 7 45 45 H 1.09007 * 110.76777 * 268.03417 * 26 25 7 46 46 H 1.09001 * 110.25028 * 78.37100 * 27 6 5 47 47 H 1.09000 * 110.47677 * 316.15645 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7046 -0.3663 2.5215 6 6 2.3280 -1.2050 3.3133 7 6 3.0613 -2.0930 2.5230 8 6 2.8562 -1.7589 1.2170 9 7 3.4057 -2.3960 0.1081 10 6 3.7656 -3.6926 0.1854 11 8 3.5211 -4.3316 1.1881 12 6 4.4652 -4.3428 -0.9621 13 8 4.7102 -3.7038 -1.9645 14 7 4.8247 -5.6395 -0.8851 15 6 5.5116 -6.2774 -2.0109 16 6 5.8050 -7.7391 -1.6672 17 6 6.5111 -8.3955 -2.8255 18 1 6.7291 -7.8268 -3.7174 19 6 6.8787 -9.7220 -2.7467 20 7 6.6137 -10.4144 -1.6604 21 14 7.7546 -10.5354 -4.1822 22 1 9.2222 -10.3763 -4.0211 23 1 7.4139 -11.9805 -4.2153 24 1 7.3237 -9.8961 -5.4514 25 6 3.7942 -3.0755 3.4096 26 6 3.7891 -2.4350 4.8139 27 6 2.5314 -1.5412 4.7780 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 3.5297 -1.9068 -0.7204 36 1 4.6292 -6.1501 -0.0839 37 1 4.8774 -6.2322 -2.8962 38 1 6.4482 -5.7557 -2.2078 39 1 6.4394 -7.7840 -0.7820 40 1 4.8686 -8.2610 -1.4700 41 1 6.8720 -11.3477 -1.6051 42 1 4.8175 -3.2105 3.0593 43 1 3.2723 -4.0323 3.4285 44 1 3.6990 -3.1984 5.5866 45 1 4.6858 -1.8348 4.9683 46 1 1.6692 -2.0854 5.1635 47 1 2.6966 -0.6334 5.3582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352244167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:15 Heat of formation + Delta-G solvation = 5.604452 kcal Electronic energy + Delta-G solvation = -28562.309757 eV Core-core repulsion = 24553.817713 eV Total energy + Delta-G solvation = -4008.492045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01225 -40.42418 -38.44288 -37.32424 -35.65017 -34.84743 -34.56036 -32.91813 -30.31738 -29.86252 -28.84015 -27.69808 -27.04137 -25.83006 -24.13034 -23.27595 -21.46919 -20.98967 -20.69643 -20.15549 -19.28372 -18.21458 -17.56300 -16.77017 -16.33049 -16.23216 -15.70932 -15.47436 -14.99563 -14.93461 -14.77174 -14.53035 -14.32539 -13.69854 -13.57488 -13.26095 -13.06798 -12.97371 -12.84181 -12.65833 -12.62182 -12.36767 -11.98524 -11.75951 -11.67964 -11.59204 -11.30924 -11.25624 -11.10965 -11.06603 -10.83701 -10.70803 -10.46854 -10.34770 -9.89425 -9.56615 -9.30710 -8.94908 -8.82262 -8.46975 -8.10683 -6.14342 -4.18376 1.10996 1.66833 1.89818 2.48642 2.62553 3.25973 3.26439 3.32725 3.35895 3.58240 3.73752 4.29205 4.35171 4.47515 4.53628 4.56618 4.68257 4.94011 5.05778 5.12620 5.13993 5.15764 5.22727 5.28752 5.32773 5.39734 5.56886 5.64920 5.71536 5.74013 5.79204 5.87100 6.00829 6.07944 6.11040 6.15196 6.27021 6.45114 6.52016 6.59368 6.72370 6.78965 7.35285 7.50151 7.51451 7.61144 7.72047 7.82174 8.08066 8.22908 8.87120 9.46932 10.97103 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.002320 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.099190 B =12067.067440 C =13335.241246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 C -0.162 4.162 4 N -0.376 5.376 5 N -0.264 5.264 6 C 0.060 3.940 7 C -0.243 4.243 8 C 0.314 3.686 9 N -0.631 5.631 10 C 0.513 3.487 11 O -0.477 6.477 12 C 0.504 3.496 13 O -0.530 6.530 14 N -0.680 5.680 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.025 4.025 26 C -0.120 4.120 27 C -0.028 4.028 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 21.827 9.486 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 C -0.219 4.219 4 N -0.165 5.165 5 N -0.086 5.086 6 C -0.107 4.107 7 C -0.257 4.257 8 C 0.096 3.904 9 N -0.282 5.282 10 C 0.294 3.706 11 O -0.347 6.347 12 C 0.283 3.717 13 O -0.408 6.408 14 N -0.331 5.331 15 C -0.003 4.003 16 C -0.026 4.026 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.063 4.063 26 C -0.158 4.158 27 C -0.068 4.068 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.258 0.742 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.056 22.613 9.315 26.839 hybrid contribution 0.904 -1.130 -1.069 1.799 sum -10.151 21.483 8.246 25.151 Atomic orbital electron populations 1.22098 0.92811 1.03170 1.03538 1.21295 0.96109 0.93867 0.83150 1.22167 1.01851 0.94338 1.03594 1.49011 1.36891 1.24804 1.05783 1.77074 1.23368 1.22919 0.85254 1.23142 0.95997 0.93850 0.97737 1.20221 1.10730 1.04993 0.89756 1.16978 0.94868 0.91145 0.87373 1.42431 1.60559 1.11469 1.13777 1.20603 0.79859 0.81231 0.88870 1.90817 1.50610 1.62135 1.31137 1.19571 0.81304 0.83944 0.86884 1.90759 1.55173 1.63395 1.31467 1.46228 1.56047 1.09356 1.21442 1.21997 0.95517 0.96232 0.86545 1.19362 0.97790 0.87319 0.98165 1.20993 1.38333 0.95761 1.01229 0.92153 1.24996 0.95802 0.97315 0.96111 1.69951 1.46735 1.09199 1.27122 0.86497 0.79889 0.78550 0.82522 1.20512 1.21125 1.19729 1.20307 0.99194 0.96309 0.90464 1.22406 0.97057 0.98675 0.97694 1.20574 0.99052 0.99899 0.87239 0.90808 0.90548 0.92020 0.88642 0.90494 0.90902 0.92004 0.74195 0.75208 0.91679 0.91654 0.95584 0.95612 0.92714 0.91980 0.89811 0.90058 0.91052 0.89488 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.40 37.16 0.35 -0.84 16 2 C 0.16 1.31 3.70 -67.93 -0.25 1.06 16 3 C -0.16 -1.12 9.49 37.16 0.35 -0.77 16 4 N -0.38 -4.40 3.30 -53.78 -0.18 -4.58 16 5 N -0.26 -3.40 12.41 33.91 0.42 -2.98 16 6 C 0.06 0.74 8.09 -81.90 -0.66 0.08 16 7 C -0.24 -3.26 5.84 -104.48 -0.61 -3.87 16 8 C 0.31 4.11 7.46 -152.87 -1.14 2.96 16 9 N -0.63 -7.80 5.24 -11.78 -0.06 -7.86 16 10 C 0.51 7.37 7.78 -11.65 -0.09 7.28 16 11 O -0.48 -7.44 12.68 5.47 0.07 -7.37 16 12 C 0.50 8.08 7.88 -11.65 -0.09 7.99 16 13 O -0.53 -9.35 16.48 5.48 0.09 -9.26 16 14 N -0.68 -11.54 5.55 -60.78 -0.34 -11.88 16 15 C 0.12 2.35 5.61 -4.04 -0.02 2.33 16 16 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 17 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C -0.02 -0.29 4.93 -26.89 -0.13 -0.43 16 26 C -0.12 -1.04 7.05 -25.32 -0.18 -1.22 16 27 C -0.03 -0.25 6.79 -26.71 -0.18 -0.43 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.68 7.15 -51.93 -0.37 0.31 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.42 4.38 7.50 -40.82 -0.31 4.08 16 36 H 0.41 6.60 7.94 -40.82 -0.32 6.28 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 42 H 0.06 0.78 8.07 -51.93 -0.42 0.37 16 43 H 0.08 1.09 7.29 -51.93 -0.38 0.71 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -31.72 391.48 -8.85 -40.58 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.26 Total: 5.02 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.21 Total: 1.45 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.58 Total: -52.20 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.72 -8.85 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352244167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.182 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds