Wall clock time and date at job start Tue Mar 31 2020 19:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46945 * 2 1 4 4 N 1.46503 * 109.47145 * 119.99845 * 2 1 3 5 5 N 1.40003 * 126.08770 * 303.49542 * 4 2 1 6 6 C 1.31109 * 108.47477 * 180.02562 * 5 4 2 7 7 C 1.39675 * 108.34109 * 0.02562 * 6 5 4 8 8 C 1.35783 * 126.09188 * 123.51678 * 4 2 1 9 9 N 1.39196 * 126.26190 * 359.97438 * 8 4 2 10 10 C 1.34784 * 120.00110 * 206.15694 * 9 8 4 11 11 O 1.21385 * 119.99811 * 5.42541 * 10 9 8 12 12 C 1.49303 * 119.99968 * 185.42538 * 10 9 8 13 13 O 1.21374 * 120.00310 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00329 * 180.02562 * 12 10 9 15 15 C 1.46495 * 120.00558 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47222 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47245 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99386 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00466 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99802 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47222 * 89.99726 * 21 19 17 23 23 H 1.48506 * 109.46772 * 209.99901 * 21 19 17 24 24 H 1.48499 * 109.47143 * 329.99769 * 21 19 17 25 25 C 1.51278 * 109.61217 * 179.97438 * 7 6 5 26 26 C 1.54351 * 105.19742 * 342.78809 * 25 7 6 27 27 C 1.51653 * 142.07956 * 179.77238 * 6 5 4 28 28 H 1.09000 * 109.47491 * 300.00082 * 1 2 3 29 29 H 1.09004 * 109.47388 * 60.00435 * 1 2 3 30 30 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46983 * 239.99943 * 2 1 3 32 32 H 1.09004 * 109.46488 * 299.99474 * 3 2 1 33 33 H 1.08991 * 109.47028 * 59.99861 * 3 2 1 34 34 H 1.09002 * 109.46866 * 180.02562 * 3 2 1 35 35 H 0.97006 * 120.00292 * 26.16237 * 9 8 4 36 36 H 0.97002 * 119.99441 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.46808 * 299.99885 * 15 14 12 38 38 H 1.09003 * 109.47332 * 59.99684 * 15 14 12 39 39 H 1.09001 * 109.47320 * 299.99798 * 16 15 14 40 40 H 1.09003 * 109.47040 * 59.99732 * 16 15 14 41 41 H 0.96992 * 120.00165 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.30032 * 223.85778 * 25 7 6 43 43 H 1.09005 * 110.38166 * 101.75765 * 25 7 6 44 44 H 1.08991 * 110.77465 * 144.80403 * 26 25 7 45 45 H 1.09007 * 110.76777 * 268.03417 * 26 25 7 46 46 H 1.09001 * 110.25028 * 78.37100 * 27 6 5 47 47 H 1.09000 * 110.47677 * 316.15645 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7046 -0.3663 2.5215 6 6 2.3280 -1.2050 3.3133 7 6 3.0613 -2.0930 2.5230 8 6 2.8562 -1.7589 1.2170 9 7 3.4057 -2.3960 0.1081 10 6 3.7656 -3.6926 0.1854 11 8 3.5211 -4.3316 1.1881 12 6 4.4652 -4.3428 -0.9621 13 8 4.7102 -3.7038 -1.9645 14 7 4.8247 -5.6395 -0.8851 15 6 5.5116 -6.2774 -2.0109 16 6 5.8050 -7.7391 -1.6672 17 6 6.5111 -8.3955 -2.8255 18 1 6.7291 -7.8268 -3.7174 19 6 6.8787 -9.7220 -2.7467 20 7 6.6137 -10.4144 -1.6604 21 14 7.7546 -10.5354 -4.1822 22 1 9.2222 -10.3763 -4.0211 23 1 7.4139 -11.9805 -4.2153 24 1 7.3237 -9.8961 -5.4514 25 6 3.7942 -3.0755 3.4096 26 6 3.7891 -2.4350 4.8139 27 6 2.5314 -1.5412 4.7780 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 3.5297 -1.9068 -0.7204 36 1 4.6292 -6.1501 -0.0839 37 1 4.8774 -6.2322 -2.8962 38 1 6.4482 -5.7557 -2.2078 39 1 6.4394 -7.7840 -0.7820 40 1 4.8686 -8.2610 -1.4700 41 1 6.8720 -11.3477 -1.6051 42 1 4.8175 -3.2105 3.0593 43 1 3.2723 -4.0323 3.4285 44 1 3.6990 -3.1984 5.5866 45 1 4.6858 -1.8348 4.9683 46 1 1.6692 -2.0854 5.1635 47 1 2.6966 -0.6334 5.3582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352244167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:14 Heat of formation + Delta-G solvation = -14.251467 kcal Electronic energy + Delta-G solvation = -28563.170775 eV Core-core repulsion = 24553.817713 eV Total energy + Delta-G solvation = -4009.353062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.97376 -41.64429 -39.73532 -38.11135 -37.03201 -36.05921 -35.40153 -34.81484 -31.75909 -31.17374 -29.65707 -28.27471 -28.03917 -27.34680 -25.63610 -24.10828 -23.05369 -22.23704 -21.57593 -21.17484 -20.35825 -19.32204 -18.65669 -18.45809 -17.66057 -17.39666 -16.79757 -16.62663 -16.49933 -16.06587 -15.86759 -15.58481 -15.47545 -15.12550 -14.65309 -14.38688 -14.31051 -13.93521 -13.82133 -13.56518 -13.43015 -13.26876 -13.17135 -13.02004 -12.95198 -12.59884 -12.52961 -12.39203 -12.30965 -12.29082 -12.15133 -11.92978 -11.68682 -11.61828 -11.43737 -11.27692 -10.86423 -10.61743 -10.26551 -9.83414 -9.09776 -8.23318 -6.34271 -0.06969 0.62236 0.87570 1.43374 1.43947 1.49347 1.55604 1.64640 2.02781 2.35388 2.47799 2.90643 3.12085 3.21615 3.63815 3.85662 3.90079 3.95090 4.19484 4.26859 4.29333 4.36760 4.38616 4.44955 4.61278 4.62883 4.63045 4.74085 4.81058 4.87484 4.89745 4.99662 5.01446 5.02555 5.11007 5.16032 5.19435 5.27364 5.41398 5.44583 5.55370 5.61306 5.66096 5.77614 5.87382 6.12228 6.20085 6.52361 6.67505 6.74703 6.81865 7.35470 8.88660 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.002320 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.099190 B =12067.067440 C =13335.241246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 C -0.154 4.154 4 N -0.372 5.372 5 N -0.279 5.279 6 C 0.050 3.950 7 C -0.267 4.267 8 C 0.297 3.703 9 N -0.617 5.617 10 C 0.521 3.479 11 O -0.490 6.490 12 C 0.513 3.487 13 O -0.542 6.542 14 N -0.681 5.681 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.263 1.263 25 C -0.026 4.026 26 C -0.111 4.111 27 C -0.026 4.026 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.429 0.571 36 H 0.417 0.583 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 23.145 9.046 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 C -0.212 4.212 4 N -0.160 5.160 5 N -0.102 5.102 6 C -0.117 4.117 7 C -0.281 4.281 8 C 0.079 3.921 9 N -0.268 5.268 10 C 0.302 3.698 11 O -0.361 6.361 12 C 0.292 3.708 13 O -0.421 6.421 14 N -0.332 5.332 15 C 0.016 3.984 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.064 4.064 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.269 0.731 36 H 0.253 0.747 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.244 23.982 8.867 27.932 hybrid contribution 0.910 -1.469 -0.930 1.963 sum -10.333 22.513 7.937 26.012 Atomic orbital electron populations 1.22067 0.92060 1.02474 1.04395 1.21706 0.96787 0.94678 0.82452 1.22124 1.01358 0.93352 1.04359 1.49320 1.36151 1.24324 1.06250 1.77013 1.23836 1.23443 0.85894 1.23744 0.95398 0.93223 0.99287 1.20640 1.11374 1.05709 0.90335 1.17157 0.95652 0.91912 0.87419 1.42199 1.59762 1.10694 1.14136 1.20120 0.79920 0.81780 0.87981 1.90830 1.51325 1.62637 1.31339 1.19700 0.80683 0.83309 0.87079 1.90752 1.55585 1.63588 1.32149 1.46021 1.56288 1.09929 1.20965 1.21536 0.95796 0.93883 0.87222 1.19180 0.96263 0.89671 0.96810 1.21448 1.38336 0.96323 1.02123 0.91644 1.25892 0.96584 0.98087 0.98764 1.70068 1.47977 1.09578 1.29136 0.85433 0.78769 0.77402 0.79373 1.19820 1.20867 1.18754 1.20320 0.97909 0.95784 0.92391 1.22405 0.97408 0.99003 0.96018 1.20725 0.99497 1.00848 0.85449 0.91830 0.87780 0.93425 0.87302 0.87808 0.91999 0.92660 0.73100 0.74666 0.91693 0.91695 0.97276 0.97333 0.92582 0.93334 0.91335 0.88067 0.90249 0.88312 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.40 71.98 0.68 -1.40 16 2 C 0.14 2.22 3.70 44.99 0.17 2.38 16 3 C -0.15 -1.89 9.49 71.98 0.68 -1.21 16 4 N -0.37 -8.46 3.30 -324.07 -1.07 -9.53 16 5 N -0.28 -7.04 12.41 -46.61 -0.58 -7.62 16 6 C 0.05 1.21 8.09 43.32 0.35 1.56 16 7 C -0.27 -7.09 5.84 -19.77 -0.12 -7.20 16 8 C 0.30 7.66 7.46 131.30 0.98 8.64 16 9 N -0.62 -14.91 5.24 -309.54 -1.62 -16.53 16 10 C 0.52 14.85 7.78 87.22 0.68 15.52 16 11 O -0.49 -15.40 12.68 -3.35 -0.04 -15.44 16 12 C 0.51 16.20 7.88 87.22 0.69 16.89 16 13 O -0.54 -18.62 16.48 -3.32 -0.05 -18.68 16 14 N -0.68 -23.11 5.55 -464.56 -2.58 -25.69 16 15 C 0.14 5.47 5.61 86.38 0.48 5.95 16 16 C 0.02 0.89 5.09 29.85 0.15 1.04 16 17 C -0.54 -29.25 9.11 25.60 0.23 -29.01 16 18 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -53.97 13.29 21.44 0.28 -53.68 16 21 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 C -0.03 -0.61 4.93 30.49 0.15 -0.46 16 26 C -0.11 -1.75 7.05 31.51 0.22 -1.53 16 27 C -0.03 -0.42 6.79 30.61 0.21 -0.21 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.11 1.36 7.15 -2.39 -0.02 1.34 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.43 8.54 7.50 -92.70 -0.69 7.85 16 36 H 0.42 13.53 7.94 -92.71 -0.74 12.79 16 37 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 43 H 0.07 1.82 7.29 -2.38 -0.02 1.80 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.93 391.48 1.96 -65.98 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.43 Total: 24.84 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.02 Total: 11.72 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.56 Total: -113.06 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.10 Total: -34.12 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.93 1.96 -65.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352244167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.725 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds