Wall clock time and date at job start Tue Mar 31 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47620 * 2 1 4 4 C 1.53002 * 109.47215 * 239.99448 * 2 1 3 5 5 C 1.50700 * 109.46829 * 60.00291 * 4 2 1 6 6 H 1.07992 * 120.00326 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99591 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00334 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99642 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47245 * 90.00231 * 9 7 5 11 11 H 1.48501 * 109.47021 * 210.00110 * 9 7 5 12 12 H 1.48503 * 109.47388 * 329.99954 * 9 7 5 13 13 C 1.53006 * 109.47271 * 119.99484 * 2 1 3 14 14 N 1.46501 * 109.46908 * 300.00119 * 13 2 1 15 15 C 1.34780 * 119.99727 * 179.97438 * 14 13 2 16 16 O 1.21589 * 120.00147 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99586 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99775 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47579 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99353 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00522 * 180.27695 * 19 18 17 22 22 C 1.39945 * 120.00287 * 174.46407 * 21 19 18 23 23 C 1.39279 * 120.48651 * 327.16909 * 22 21 19 24 24 C 1.38516 * 118.36099 * 179.73413 * 23 22 21 25 25 C 1.38275 * 119.22969 * 0.53738 * 24 23 22 26 26 N 1.31855 * 120.92393 * 359.72452 * 25 24 23 27 27 C 1.31817 * 121.79383 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46951 * 300.00860 * 1 2 3 29 29 H 1.09000 * 109.46740 * 60.00305 * 1 2 3 30 30 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47509 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46371 * 299.99939 * 3 2 1 33 33 H 1.08994 * 109.47354 * 59.99093 * 3 2 1 34 34 H 1.09005 * 109.47125 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.47106 * 300.00176 * 4 2 1 36 36 H 0.96994 * 120.00197 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47304 * 179.97438 * 13 2 1 38 38 H 1.09004 * 109.46733 * 59.99600 * 13 2 1 39 39 H 0.97002 * 120.00308 * 359.97438 * 14 13 2 40 40 H 0.96991 * 120.00596 * 0.02562 * 17 15 14 41 41 H 1.09005 * 109.47070 * 60.00235 * 18 17 15 42 42 H 1.09000 * 109.47409 * 300.00118 * 18 17 15 43 43 H 0.97004 * 120.00037 * 354.46098 * 21 19 18 44 44 H 1.07998 * 120.82039 * 0.02562 * 23 22 21 45 45 H 1.07995 * 120.38283 * 180.25927 * 24 23 22 46 46 H 1.07998 * 119.53396 * 179.74604 * 25 24 23 47 47 H 1.08005 * 119.66681 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8668 -2.3807 7 6 1.8713 -0.4819 -3.7319 8 7 2.6282 -1.5506 -3.8525 9 14 1.2481 0.3982 -5.2572 10 1 2.2255 1.4406 -5.6613 11 1 1.0839 -0.5811 -6.3614 12 1 -0.0606 1.0348 -4.9615 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0304 2.4454 15 6 1.8769 -0.4911 3.6696 16 8 2.5759 -1.4796 3.7813 17 7 1.4280 0.1447 4.7699 18 6 1.7820 -0.3557 6.1006 19 6 1.1593 0.5271 7.1513 20 8 0.4858 1.4802 6.8211 21 7 1.3551 0.2605 8.4578 22 6 0.8753 1.1436 9.4317 23 6 0.8274 2.5130 9.1818 24 6 0.3393 3.3464 10.1747 25 6 -0.0705 2.7975 11.3759 26 7 -0.0072 1.4969 11.5832 27 6 0.4450 0.6682 10.6633 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9564 0.8898 34 1 3.1301 -0.7210 -1.2494 35 1 1.6767 -1.7490 -1.2491 36 1 2.8625 -1.8820 -4.7334 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7488 1.2494 39 1 0.9943 0.7584 2.3564 40 1 0.8707 0.9335 4.6809 41 1 2.8659 -0.3474 6.2154 42 1 1.4122 -1.3746 6.2159 43 1 1.8285 -0.5435 8.7232 44 1 1.1581 2.9146 8.2354 45 1 0.2837 4.4129 10.0142 46 1 -0.4480 3.4431 12.1550 47 1 0.4822 -0.3913 10.8699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352685071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:22 Heat of formation + Delta-G solvation = -36.578494 kcal Electronic energy + Delta-G solvation = -27454.933380 eV Core-core repulsion = 23444.612145 eV Total energy + Delta-G solvation = -4010.321234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43224 -40.16604 -39.45506 -37.26491 -35.78969 -34.53770 -33.61276 -32.64468 -32.08464 -30.87182 -28.24306 -27.03064 -26.50586 -25.78365 -24.37276 -23.68003 -22.78604 -21.18048 -20.78413 -19.15686 -18.64018 -17.87647 -17.41388 -17.13291 -16.59096 -16.42767 -16.04321 -15.96743 -15.16472 -14.99494 -14.56184 -14.43160 -14.37307 -14.04522 -13.87933 -13.72618 -13.46620 -13.04446 -13.02756 -12.74877 -12.65430 -12.11940 -12.06227 -11.52368 -11.15638 -11.01405 -10.85720 -10.83588 -10.63574 -10.40129 -10.25213 -10.21098 -10.18028 -9.88144 -9.87662 -9.38953 -9.21013 -8.93003 -8.89803 -8.62894 -8.35953 -6.00068 -4.01271 0.49094 0.78131 1.89906 2.08919 2.86837 3.28470 3.30888 3.33345 3.37991 3.39842 3.87702 4.04612 4.32290 4.35565 4.43804 4.46499 4.59170 4.80115 4.91334 4.93942 5.08835 5.35526 5.46264 5.49265 5.63157 5.63788 5.67702 5.75364 6.13088 6.18466 6.21391 6.22836 6.26753 6.40810 6.57708 6.61283 6.63622 6.77186 6.96004 7.06872 7.07891 7.14059 7.33710 7.45801 7.64099 7.76482 7.98583 8.08605 8.40494 8.66920 9.03514 9.61827 11.11348 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.001652 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.259920 B =16948.032279 C =17498.558059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.733 5.733 15 C 0.704 3.296 16 O -0.594 6.594 17 N -0.744 5.744 18 C 0.126 3.874 19 C 0.513 3.487 20 O -0.514 6.514 21 N -0.666 5.666 22 C 0.098 3.902 23 C -0.079 4.079 24 C -0.150 4.150 25 C 0.080 3.920 26 N -0.466 5.466 27 C 0.078 3.922 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.406 0.594 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.419 0.581 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.158 0.842 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 6.980 29.480 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.023 3.977 14 N -0.388 5.388 15 C 0.404 3.596 16 O -0.473 6.473 17 N -0.404 5.404 18 C -0.003 4.003 19 C 0.300 3.700 20 O -0.388 6.388 21 N -0.313 5.313 22 C 0.001 3.999 23 C -0.107 4.107 24 C -0.170 4.170 25 C -0.078 4.078 26 N -0.175 5.175 27 C -0.082 4.082 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.243 0.757 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.256 0.744 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.176 0.824 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.235 6.265 29.911 30.731 hybrid contribution -0.282 1.065 -1.689 2.016 sum -3.517 7.330 28.223 29.370 Atomic orbital electron populations 1.21758 0.95260 1.01171 1.00219 1.20929 0.95512 0.95901 0.95013 1.21757 1.00540 0.95892 1.00214 1.19090 0.96383 0.95239 0.89403 1.21186 1.31176 1.12085 0.90524 0.92257 1.25012 0.95335 0.95073 0.99078 1.69959 1.36942 1.23019 1.23434 0.86647 0.79174 0.79400 0.83064 1.20794 1.21350 1.19969 1.21530 0.98725 0.95668 0.81733 1.45349 1.55915 1.33152 1.04348 1.15864 0.80431 0.82833 0.80466 1.90926 1.42835 1.27492 1.86016 1.44730 1.58109 1.34210 1.03374 1.20761 1.01238 0.97355 0.80954 1.20938 0.79975 0.85891 0.83186 1.90736 1.37544 1.29598 1.80933 1.43328 1.57330 1.25814 1.04786 1.18806 0.99813 0.90452 0.90794 1.21663 0.97267 0.91391 1.00369 1.22129 0.99455 1.01505 0.93954 1.22774 0.97199 0.91382 0.96412 1.67667 1.13024 1.04661 1.32101 1.22627 0.96442 1.00160 0.89004 0.95269 0.91451 0.93344 0.93344 0.91466 0.95262 0.96291 0.96282 0.93047 0.91875 0.91879 0.76921 0.75696 0.87897 0.88001 0.74444 0.83591 0.84229 0.82432 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.37 0.54 -154.50 -0.08 -1.45 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.15 2.56 4.56 -4.04 -0.02 2.54 16 14 N -0.73 -10.54 4.96 -65.22 -0.32 -10.86 16 15 C 0.70 10.29 8.57 -86.92 -0.74 9.55 16 16 O -0.59 -10.82 16.34 5.29 0.09 -10.73 16 17 N -0.74 -8.00 5.53 -66.41 -0.37 -8.36 16 18 C 0.13 0.98 6.16 -5.19 -0.03 0.95 16 19 C 0.51 3.91 7.66 -10.99 -0.08 3.82 16 20 O -0.51 -5.50 13.37 5.55 0.07 -5.42 16 21 N -0.67 -3.51 5.35 -9.77 -0.05 -3.56 16 22 C 0.10 0.69 6.31 -83.54 -0.53 0.16 16 23 C -0.08 -0.61 8.77 -39.09 -0.34 -0.96 16 24 C -0.15 -0.96 10.11 -39.47 -0.40 -1.36 16 25 C 0.08 0.53 11.18 -17.53 -0.20 0.34 16 26 N -0.47 -3.85 10.35 -13.09 -0.14 -3.99 16 27 C 0.08 0.53 11.12 -17.33 -0.19 0.34 16 28 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.40 4.90 6.18 -40.82 -0.25 4.65 16 40 H 0.41 4.04 7.45 -40.82 -0.30 3.74 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.42 0.79 8.82 -40.82 -0.36 0.43 16 44 H 0.15 1.24 6.49 -52.49 -0.34 0.89 16 45 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 46 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -34.70 387.46 -8.40 -43.10 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.74 Total: 4.83 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.42 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.14 Total: -52.30 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.16 Total: -16.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.70 -8.40 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352685071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.519 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds