Wall clock time and date at job start Tue Mar 31 2020 19:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47188 * 2 1 4 4 H 1.09000 * 109.47453 * 55.00490 * 3 2 1 5 5 C 1.50705 * 109.47012 * 174.99971 * 3 2 1 6 6 H 1.07994 * 120.00182 * 120.00207 * 5 3 2 7 7 C 1.37881 * 119.99835 * 300.00177 * 5 3 2 8 8 N 1.31514 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47405 * 59.99628 * 9 7 5 11 11 H 1.48496 * 109.47360 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46869 * 299.99702 * 9 7 5 13 13 N 1.46495 * 109.47372 * 294.99934 * 3 2 1 14 14 C 1.34778 * 120.00116 * 85.00058 * 13 3 2 15 15 O 1.21552 * 120.00020 * 0.02562 * 14 13 3 16 16 C 1.47821 * 119.99630 * 179.97438 * 14 13 3 17 17 N 1.33008 * 120.15713 * 354.47487 * 16 14 13 18 18 C 1.31740 * 119.99516 * 180.02562 * 17 16 14 19 19 C 1.38803 * 120.31747 * 359.96910 * 18 17 16 20 20 N 1.32031 * 120.30516 * 0.02967 * 19 18 17 21 21 C 1.32740 * 119.99726 * 359.97438 * 20 19 18 22 22 N 1.38814 * 120.15353 * 179.97438 * 21 20 19 23 23 C 1.34770 * 119.99740 * 5.47524 * 22 21 20 24 24 O 1.21267 * 120.00610 * 0.02562 * 23 22 21 25 25 C 1.50710 * 119.99785 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47035 * 180.02562 * 25 23 22 27 27 C 1.53002 * 109.46558 * 300.00235 * 25 23 22 28 28 C 1.53002 * 109.47010 * 59.99867 * 25 23 22 29 29 H 1.09004 * 109.46892 * 300.00223 * 1 2 3 30 30 H 1.09003 * 109.46503 * 59.99817 * 1 2 3 31 31 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46892 * 239.99777 * 2 1 3 33 33 H 1.09003 * 109.46503 * 120.00183 * 2 1 3 34 34 H 0.96996 * 120.00199 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99726 * 265.00236 * 13 3 2 36 36 H 1.08003 * 119.83715 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.84573 * 179.74456 * 19 18 17 38 38 H 0.97000 * 119.99415 * 185.47953 * 22 21 20 39 39 H 1.08990 * 109.47377 * 59.99810 * 26 25 23 40 40 H 1.08998 * 109.46665 * 180.02562 * 26 25 23 41 41 H 1.09003 * 109.46819 * 299.99498 * 26 25 23 42 42 H 1.09000 * 109.47583 * 60.00244 * 27 25 23 43 43 H 1.09002 * 109.46692 * 180.02562 * 27 25 23 44 44 H 1.09001 * 109.47297 * 299.99340 * 27 25 23 45 45 H 1.08996 * 109.46947 * 60.00266 * 28 25 23 46 46 H 1.09002 * 109.46714 * 179.97438 * 28 25 23 47 47 H 1.09000 * 109.47198 * 300.00440 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3819 10 1 6.4996 2.2812 1.3822 11 1 6.3978 0.2175 2.6510 12 1 6.5975 0.1470 0.2349 13 7 1.6525 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3409 2.6327 -0.4320 16 6 0.0446 3.3258 -2.6299 17 7 0.9281 3.4602 -3.6149 18 6 0.5767 4.0506 -4.7389 19 6 -0.7140 4.5343 -4.9025 20 7 -1.6010 4.4074 -3.9327 21 6 -1.2600 3.8146 -2.7950 22 7 -2.1898 3.6800 -1.7730 23 6 -3.4698 4.0509 -1.9734 24 8 -3.8096 4.5018 -3.0466 25 6 -4.4791 3.9052 -0.8637 26 6 -5.8451 4.3942 -1.3493 27 6 -4.5799 2.4339 -0.4561 28 6 -4.0368 4.7389 0.3406 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0612 2.9499 35 1 2.2721 2.1231 -1.9977 36 1 1.2963 4.1588 -5.5370 37 1 -0.9928 5.0207 -5.8256 38 1 -1.9180 3.3189 -0.9147 39 1 -6.1599 3.7999 -2.2070 40 1 -6.5749 4.2892 -0.5465 41 1 -5.7735 5.4423 -1.6399 42 1 -3.6068 2.0851 -0.1102 43 1 -5.3102 2.3285 0.3462 44 1 -4.8950 1.8399 -1.3140 45 1 -3.9650 5.7870 0.0501 46 1 -4.7671 4.6339 1.1430 47 1 -3.0637 4.3902 0.6863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358060072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:43 Heat of formation + Delta-G solvation = -22.949599 kcal Electronic energy + Delta-G solvation = -29975.157864 eV Core-core repulsion = 25965.427623 eV Total energy + Delta-G solvation = -4009.730241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58823 -39.94506 -38.98404 -35.98271 -35.57691 -34.91159 -33.85597 -32.45796 -31.20191 -30.29859 -27.48845 -27.35910 -27.15193 -25.48815 -24.88477 -23.09894 -22.46446 -21.12412 -19.70203 -19.48000 -18.22727 -18.00037 -17.38988 -16.39340 -16.10244 -15.79926 -15.41068 -15.13964 -14.98035 -14.79711 -14.33840 -14.21225 -14.02475 -13.72330 -13.51179 -13.20794 -12.76311 -12.54034 -12.36636 -12.24682 -12.13045 -11.84286 -11.67037 -11.54166 -11.50402 -11.32644 -11.11039 -11.09373 -11.05798 -10.88737 -10.58747 -10.43708 -10.28988 -10.01859 -9.81819 -9.63935 -9.15530 -8.81883 -8.58653 -8.48324 -7.98731 -6.18698 -4.28097 0.44801 1.06908 2.61287 2.78745 3.11214 3.23322 3.28516 3.29978 3.64067 3.95263 4.04708 4.17822 4.29603 4.43188 4.58619 4.68921 4.70903 5.00331 5.05582 5.13260 5.16576 5.41725 5.44104 5.44717 5.60198 5.66012 5.70862 5.77077 5.93512 6.03731 6.06812 6.13224 6.28730 6.33723 6.43409 6.53127 6.93517 6.98663 7.04487 7.14351 7.25572 7.40429 7.52116 7.62705 7.76118 7.80568 8.06725 8.18274 8.46447 8.64495 8.89800 9.38768 10.86607 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003535 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.832421 B = 7919.994406 C = 9334.925949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.670 5.670 14 C 0.567 3.433 15 O -0.553 6.553 16 C -0.003 4.003 17 N -0.383 5.383 18 C 0.005 3.995 19 C 0.104 3.896 20 N -0.443 5.443 21 C 0.367 3.633 22 N -0.639 5.639 23 C 0.510 3.490 24 O -0.481 6.481 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.145 4.145 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.437 0.563 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 6.158 -8.549 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.351 3.649 15 O -0.434 6.434 16 C -0.150 4.150 17 N -0.100 5.100 18 C -0.159 4.159 19 C -0.060 4.060 20 N -0.164 5.164 21 C 0.131 3.869 22 N -0.299 5.299 23 C 0.296 3.704 24 O -0.350 6.350 25 C -0.086 4.086 26 C -0.184 4.184 27 C -0.203 4.203 28 C -0.203 4.203 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.192 0.808 37 H 0.192 0.808 38 H 0.291 0.709 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.029 6.266 -8.223 16.633 hybrid contribution 1.542 -0.142 -0.098 1.552 sum -11.487 6.125 -8.321 15.450 Atomic orbital electron populations 1.21853 0.98411 0.98325 1.00979 1.21951 0.92587 0.99522 1.02653 1.18967 0.94678 0.89346 0.80422 0.92802 1.21175 0.90442 1.39376 1.06501 0.91908 1.24861 0.98716 0.94640 0.95270 1.69867 1.35303 1.37423 1.09328 0.86491 0.84679 0.78390 0.77478 1.20139 1.21118 1.20084 1.46399 1.13536 1.52505 1.19040 1.17449 0.83681 0.79221 0.84581 1.90335 1.51356 1.62490 1.39200 1.21963 0.90778 1.04970 0.97275 1.68302 1.33313 1.08886 0.99467 1.23657 0.96962 0.99007 0.96283 1.23998 0.89993 0.94348 0.97703 1.68640 1.34329 1.13985 0.99415 1.19362 0.87783 0.90989 0.88782 1.44733 1.07784 1.60916 1.16503 1.21079 0.82522 0.77100 0.89678 1.90753 1.78653 1.39882 1.25742 1.20830 0.94984 0.98490 0.94294 1.21669 0.93527 1.02015 1.01169 1.21927 1.03532 0.92789 1.02088 1.21920 1.02560 0.99587 0.96217 0.92902 0.94629 0.95601 0.94815 0.87935 0.92431 0.76325 0.80806 0.80825 0.70868 0.91914 0.91764 0.91906 0.91244 0.90965 0.92084 0.92065 0.90950 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.38 2.24 -69.09 -0.15 6.22 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.71 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.69 11.29 55.43 0.63 -23.06 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.67 -13.71 5.01 -55.89 -0.28 -13.99 16 14 C 0.57 10.97 6.36 -12.34 -0.08 10.89 16 15 O -0.55 -11.10 10.78 5.32 0.06 -11.04 16 16 C 0.00 -0.06 6.77 -82.67 -0.56 -0.62 16 17 N -0.38 -5.82 9.72 -9.50 -0.09 -5.91 16 18 C 0.00 0.06 11.21 -17.38 -0.19 -0.14 16 19 C 0.10 1.21 11.22 -17.26 -0.19 1.02 16 20 N -0.44 -7.00 8.06 -11.91 -0.10 -7.09 16 21 C 0.37 6.15 7.42 -154.47 -1.15 5.00 16 22 N -0.64 -10.14 5.05 -11.18 -0.06 -10.20 16 23 C 0.51 7.65 6.44 -10.98 -0.07 7.58 16 24 O -0.48 -8.37 14.26 5.57 0.08 -8.29 16 25 C -0.08 -0.94 0.87 -155.65 -0.14 -1.08 16 26 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 27 C -0.15 -1.52 8.37 37.16 0.31 -1.21 16 28 C -0.15 -1.48 8.37 37.16 0.31 -1.17 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.40 7.73 7.90 -40.82 -0.32 7.41 16 36 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.44 7.00 4.03 -40.96 -0.17 6.83 16 39 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -30.17 379.47 -7.77 -37.95 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.86 Total: 13.27 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.85 Total: 7.56 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.10 Total: -60.26 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.14 Total: -19.34 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.17 -7.77 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358060072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.996 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds