Wall clock time and date at job start Tue Mar 31 2020 19:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47188 * 2 1 4 4 H 1.09000 * 109.47453 * 55.00490 * 3 2 1 5 5 C 1.50705 * 109.47012 * 174.99971 * 3 2 1 6 6 H 1.07994 * 120.00182 * 120.00207 * 5 3 2 7 7 C 1.37881 * 119.99835 * 300.00177 * 5 3 2 8 8 N 1.31514 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47405 * 59.99628 * 9 7 5 11 11 H 1.48496 * 109.47360 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46869 * 299.99702 * 9 7 5 13 13 N 1.46495 * 109.47372 * 294.99934 * 3 2 1 14 14 C 1.34778 * 120.00116 * 85.00058 * 13 3 2 15 15 O 1.21552 * 120.00020 * 0.02562 * 14 13 3 16 16 C 1.47821 * 119.99630 * 179.97438 * 14 13 3 17 17 N 1.33008 * 120.15713 * 354.47487 * 16 14 13 18 18 C 1.31740 * 119.99516 * 180.02562 * 17 16 14 19 19 C 1.38803 * 120.31747 * 359.96910 * 18 17 16 20 20 N 1.32031 * 120.30516 * 0.02967 * 19 18 17 21 21 C 1.32740 * 119.99726 * 359.97438 * 20 19 18 22 22 N 1.38814 * 120.15353 * 179.97438 * 21 20 19 23 23 C 1.34770 * 119.99740 * 5.47524 * 22 21 20 24 24 O 1.21267 * 120.00610 * 0.02562 * 23 22 21 25 25 C 1.50710 * 119.99785 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47035 * 180.02562 * 25 23 22 27 27 C 1.53002 * 109.46558 * 300.00235 * 25 23 22 28 28 C 1.53002 * 109.47010 * 59.99867 * 25 23 22 29 29 H 1.09004 * 109.46892 * 300.00223 * 1 2 3 30 30 H 1.09003 * 109.46503 * 59.99817 * 1 2 3 31 31 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46892 * 239.99777 * 2 1 3 33 33 H 1.09003 * 109.46503 * 120.00183 * 2 1 3 34 34 H 0.96996 * 120.00199 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99726 * 265.00236 * 13 3 2 36 36 H 1.08003 * 119.83715 * 179.97438 * 18 17 16 37 37 H 1.08002 * 119.84573 * 179.74456 * 19 18 17 38 38 H 0.97000 * 119.99415 * 185.47953 * 22 21 20 39 39 H 1.08990 * 109.47377 * 59.99810 * 26 25 23 40 40 H 1.08998 * 109.46665 * 180.02562 * 26 25 23 41 41 H 1.09003 * 109.46819 * 299.99498 * 26 25 23 42 42 H 1.09000 * 109.47583 * 60.00244 * 27 25 23 43 43 H 1.09002 * 109.46692 * 180.02562 * 27 25 23 44 44 H 1.09001 * 109.47297 * 299.99340 * 27 25 23 45 45 H 1.08996 * 109.46947 * 60.00266 * 28 25 23 46 46 H 1.09002 * 109.46714 * 179.97438 * 28 25 23 47 47 H 1.09000 * 109.47198 * 300.00440 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3819 10 1 6.4996 2.2812 1.3822 11 1 6.3978 0.2175 2.6510 12 1 6.5975 0.1470 0.2349 13 7 1.6525 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3409 2.6327 -0.4320 16 6 0.0446 3.3258 -2.6299 17 7 0.9281 3.4602 -3.6149 18 6 0.5767 4.0506 -4.7389 19 6 -0.7140 4.5343 -4.9025 20 7 -1.6010 4.4074 -3.9327 21 6 -1.2600 3.8146 -2.7950 22 7 -2.1898 3.6800 -1.7730 23 6 -3.4698 4.0509 -1.9734 24 8 -3.8096 4.5018 -3.0466 25 6 -4.4791 3.9052 -0.8637 26 6 -5.8451 4.3942 -1.3493 27 6 -4.5799 2.4339 -0.4561 28 6 -4.0368 4.7389 0.3406 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0612 2.9499 35 1 2.2721 2.1231 -1.9977 36 1 1.2963 4.1588 -5.5370 37 1 -0.9928 5.0207 -5.8256 38 1 -1.9180 3.3189 -0.9147 39 1 -6.1599 3.7999 -2.2070 40 1 -6.5749 4.2892 -0.5465 41 1 -5.7735 5.4423 -1.6399 42 1 -3.6068 2.0851 -0.1102 43 1 -5.3102 2.3285 0.3462 44 1 -4.8950 1.8399 -1.3140 45 1 -3.9650 5.7870 0.0501 46 1 -4.7671 4.6339 1.1430 47 1 -3.0637 4.3902 0.6863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358060072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:42 Heat of formation + Delta-G solvation = -42.625627 kcal Electronic energy + Delta-G solvation = -29976.011081 eV Core-core repulsion = 25965.427623 eV Total energy + Delta-G solvation = -4010.583458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.75374 -41.07160 -40.47586 -37.29312 -36.80796 -36.28050 -35.03920 -34.27118 -32.86669 -31.53966 -29.03104 -28.31994 -28.12631 -26.70741 -26.07265 -24.88870 -23.52169 -22.66344 -21.36283 -20.68889 -19.62853 -19.22412 -18.54673 -17.87216 -17.52900 -17.04822 -17.00817 -16.36796 -16.27877 -16.15733 -15.70554 -15.46672 -15.06340 -14.88109 -14.59131 -14.51355 -14.48504 -13.91369 -13.49862 -13.41521 -13.17064 -13.15791 -12.98922 -12.92146 -12.71275 -12.68725 -12.66189 -12.61348 -12.20486 -12.08869 -11.98037 -11.95104 -11.76521 -11.58951 -11.25002 -11.10187 -11.06679 -10.53427 -9.98648 -9.85460 -9.50174 -8.16155 -6.32618 -0.70140 -0.01966 1.46289 1.47137 1.49408 1.54855 1.67051 1.74561 2.20826 2.46218 2.76300 2.99171 3.12237 3.13711 3.26390 3.54590 3.75668 3.84034 3.98299 4.06323 4.23457 4.36545 4.50860 4.56923 4.64769 4.64866 4.74266 4.75940 4.86933 4.90091 4.94452 4.99279 5.06383 5.16662 5.23659 5.24782 5.27283 5.35203 5.41944 5.48751 5.59064 5.76660 5.85827 5.92440 6.14227 6.26783 6.60493 6.71635 6.83995 6.99443 7.26154 7.41768 8.88654 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003535 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.832421 B = 7919.994406 C = 9334.925949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.013 0.987 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.674 5.674 14 C 0.566 3.434 15 O -0.568 6.568 16 C -0.031 4.031 17 N -0.400 5.400 18 C 0.023 3.977 19 C 0.120 3.880 20 N -0.470 5.470 21 C 0.350 3.650 22 N -0.644 5.644 23 C 0.505 3.495 24 O -0.509 6.509 25 C -0.080 4.080 26 C -0.121 4.121 27 C -0.143 4.143 28 C -0.143 4.143 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.266 0.734 35 H 0.408 0.592 36 H 0.224 0.776 37 H 0.222 0.778 38 H 0.434 0.566 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 6.814 -10.367 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.320 5.320 14 C 0.352 3.648 15 O -0.449 6.449 16 C -0.174 4.174 17 N -0.116 5.116 18 C -0.143 4.143 19 C -0.045 4.045 20 N -0.190 5.190 21 C 0.116 3.884 22 N -0.303 5.303 23 C 0.293 3.707 24 O -0.381 6.381 25 C -0.083 4.083 26 C -0.179 4.179 27 C -0.200 4.200 28 C -0.200 4.200 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.241 0.759 37 H 0.239 0.761 38 H 0.287 0.713 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.185 6.917 -10.017 17.945 hybrid contribution 1.559 -0.244 0.287 1.604 sum -11.626 6.673 -9.729 16.563 Atomic orbital electron populations 1.21687 0.96616 0.99411 1.00427 1.21797 0.94116 0.98763 1.01380 1.18553 0.93855 0.89425 0.80699 0.96872 1.21503 0.91424 1.39357 1.06790 0.91512 1.25658 1.02989 0.94269 0.94948 1.70002 1.36959 1.38023 1.09732 0.85490 0.79482 0.78382 0.77548 1.19845 1.20986 1.19189 1.46125 1.14411 1.53388 1.18076 1.17799 0.82894 0.78609 0.85519 1.90324 1.51646 1.62740 1.40202 1.21415 0.91564 1.07319 0.97123 1.68287 1.33269 1.09818 1.00275 1.24512 0.97827 0.96220 0.95737 1.24896 0.89449 0.92231 0.97927 1.68726 1.35865 1.14609 0.99830 1.19483 0.87810 0.91567 0.89500 1.44808 1.08238 1.60913 1.16348 1.21808 0.82595 0.76077 0.90251 1.90714 1.79005 1.41287 1.27083 1.20932 0.94585 0.99390 0.93417 1.21659 0.93168 1.01195 1.01850 1.21925 1.03392 0.91916 1.02788 1.21922 1.02544 0.99089 0.96439 0.94178 0.94389 0.93578 0.94590 0.90442 0.92475 0.75656 0.75950 0.76134 0.71265 0.92741 0.88893 0.92685 0.92877 0.88301 0.92371 0.92276 0.88283 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.51 71.98 0.61 -4.61 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.76 2.24 44.25 0.10 13.86 16 4 H 0.01 0.77 7.58 -2.39 -0.02 0.75 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -50.10 11.29 21.45 0.24 -49.86 16 9 Si 0.97 41.40 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 13 N -0.67 -28.41 5.01 -449.02 -2.25 -30.66 16 14 C 0.57 22.66 6.36 86.78 0.55 23.21 16 15 O -0.57 -23.96 10.78 -3.88 -0.04 -24.00 16 16 C -0.03 -1.07 6.77 42.00 0.28 -0.78 16 17 N -0.40 -11.61 9.72 -183.95 -1.79 -13.39 16 18 C 0.02 0.45 11.21 84.84 0.95 1.40 16 19 C 0.12 2.42 11.22 84.80 0.95 3.37 16 20 N -0.47 -14.28 8.06 -191.60 -1.54 -15.83 16 21 C 0.35 11.83 7.42 133.31 0.99 12.82 16 22 N -0.64 -21.10 5.05 -307.68 -1.55 -22.66 16 23 C 0.50 15.39 6.44 87.66 0.56 15.95 16 24 O -0.51 -17.87 14.26 -2.99 -0.04 -17.91 16 25 C -0.08 -1.79 0.87 -52.92 -0.05 -1.83 16 26 C -0.12 -2.29 7.76 71.98 0.56 -1.73 16 27 C -0.14 -2.89 8.37 71.98 0.60 -2.29 16 28 C -0.14 -2.84 8.37 71.98 0.60 -2.24 16 29 H 0.04 1.76 7.84 -2.39 -0.02 1.74 16 30 H 0.04 1.55 5.65 -2.39 -0.01 1.54 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 4.09 5.95 -2.39 -0.01 4.08 16 34 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.41 15.95 7.90 -92.70 -0.73 15.22 16 36 H 0.22 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.43 14.64 4.03 -94.89 -0.38 14.26 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 42 H 0.05 1.25 7.56 -2.39 -0.02 1.23 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.05 1.21 7.56 -2.39 -0.02 1.20 16 Total: -1.00 -68.66 379.47 2.50 -66.16 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.11 Total: 40.17 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.56 Total: 24.56 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -6.89 Total: -132.40 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.08 Total: -41.91 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.66 2.50 -66.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358060072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.532 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds