Wall clock time and date at job start Tue Mar 31 2020 19:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 H 1.08995 * 109.46803 * 305.00614 * 3 2 1 5 5 C 1.50695 * 109.47120 * 185.00024 * 3 2 1 6 6 H 1.07996 * 119.99782 * 240.00226 * 5 3 2 7 7 C 1.37877 * 119.99982 * 59.72679 * 5 3 2 8 8 N 1.31517 * 120.00217 * 0.27518 * 7 5 3 9 9 Si 1.86803 * 120.00134 * 180.27194 * 7 5 3 10 10 H 1.48496 * 109.46890 * 89.99958 * 9 7 5 11 11 H 1.48494 * 109.47211 * 210.00095 * 9 7 5 12 12 H 1.48499 * 109.46708 * 330.00260 * 9 7 5 13 13 N 1.46503 * 109.46569 * 65.00257 * 3 2 1 14 14 C 1.34777 * 119.99530 * 274.99830 * 13 3 2 15 15 O 1.21552 * 120.00712 * 0.02562 * 14 13 3 16 16 C 1.47820 * 119.99493 * 180.02562 * 14 13 3 17 17 N 1.33012 * 120.15774 * 354.77122 * 16 14 13 18 18 C 1.31736 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.38802 * 120.31333 * 359.97438 * 18 17 16 20 20 N 1.32028 * 120.30942 * 359.97438 * 19 18 17 21 21 C 1.32744 * 119.99561 * 359.77618 * 20 19 18 22 22 N 1.38804 * 120.15669 * 180.23595 * 21 20 19 23 23 C 1.34784 * 120.00282 * 5.72588 * 22 21 20 24 24 O 1.21268 * 119.99549 * 0.02562 * 23 22 21 25 25 C 1.50693 * 120.00308 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.47300 * 179.97438 * 25 23 22 27 27 C 1.52993 * 109.47426 * 300.00027 * 25 23 22 28 28 C 1.53003 * 109.46931 * 60.00108 * 25 23 22 29 29 H 1.09002 * 109.47034 * 299.99587 * 1 2 3 30 30 H 1.08997 * 109.47259 * 59.99810 * 1 2 3 31 31 H 1.09008 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47034 * 240.00413 * 2 1 3 33 33 H 1.08997 * 109.47259 * 120.00189 * 2 1 3 34 34 H 0.96995 * 120.00081 * 179.97438 * 8 7 5 35 35 H 0.96994 * 120.00247 * 95.00536 * 13 3 2 36 36 H 1.07998 * 119.84179 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.84479 * 180.02562 * 19 18 17 38 38 H 0.96998 * 120.00247 * 185.72520 * 22 21 20 39 39 H 1.09007 * 109.46849 * 60.00095 * 26 25 23 40 40 H 1.08993 * 109.47785 * 180.02562 * 26 25 23 41 41 H 1.09005 * 109.47259 * 300.00504 * 26 25 23 42 42 H 1.09003 * 109.47079 * 59.99766 * 27 25 23 43 43 H 1.09001 * 109.47321 * 179.97438 * 27 25 23 44 44 H 1.08999 * 109.47204 * 299.99757 * 27 25 23 45 45 H 1.09004 * 109.47425 * 60.00196 * 28 25 23 46 46 H 1.09002 * 109.47127 * 179.97438 * 28 25 23 47 47 H 1.08994 * 109.47122 * 300.00077 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1435 0.8733 -1.2253 8 7 3.4064 0.3320 -2.1704 9 14 6.0055 0.8687 -1.3752 10 1 6.5493 -0.3632 -0.7493 11 1 6.3866 0.9049 -2.8099 12 1 6.5604 2.0609 -0.6853 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3414 2.6318 0.4324 16 6 0.0443 3.3255 2.6300 17 7 0.8484 3.2733 3.6882 18 6 0.4973 3.8641 4.8121 19 6 -0.7101 4.5434 4.8990 20 7 -1.5171 4.6039 3.8559 21 6 -1.1733 4.0171 2.7159 22 7 -2.0170 4.0827 1.6156 23 6 -3.1321 4.8382 1.6655 24 8 -3.3980 5.4609 2.6716 25 6 -4.0478 4.9099 0.4709 26 6 -5.2300 5.8276 0.7888 27 6 -3.2783 5.4658 -0.7289 28 6 -4.5652 3.5085 0.1401 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8296 -0.0693 -2.9455 35 1 2.2719 2.1231 1.9978 36 1 1.1519 3.8198 5.6699 37 1 -0.9902 5.0254 5.8239 38 1 -1.8041 3.5850 0.8108 39 1 -4.8617 6.8261 1.0247 40 1 -5.8926 5.8792 -0.0751 41 1 -5.7782 5.4312 1.6435 42 1 -2.4363 4.8116 -0.9553 43 1 -3.9405 5.5172 -1.5932 44 1 -2.9097 6.4641 -0.4933 45 1 -5.1136 3.1125 0.9949 46 1 -5.2280 3.5604 -0.7238 47 1 -3.7233 2.8544 -0.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358060080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:47 Heat of formation + Delta-G solvation = -23.012533 kcal Electronic energy + Delta-G solvation = -29936.108199 eV Core-core repulsion = 25926.375229 eV Total energy + Delta-G solvation = -4009.732970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58686 -39.94478 -38.98294 -35.98280 -35.57920 -34.90863 -33.85599 -32.46048 -31.19528 -30.29788 -27.48645 -27.35565 -27.15313 -25.48915 -24.88468 -23.09763 -22.46514 -21.11665 -19.70382 -19.47754 -18.22660 -18.00041 -17.38661 -16.39230 -16.09841 -15.84115 -15.39806 -15.14377 -14.94457 -14.80045 -14.31568 -14.25737 -14.01796 -13.69303 -13.51589 -13.21455 -12.76348 -12.53720 -12.36463 -12.25139 -12.13118 -11.84061 -11.66693 -11.54046 -11.50535 -11.32787 -11.10851 -11.08955 -11.05317 -10.89434 -10.58404 -10.42051 -10.28938 -10.02057 -9.81742 -9.63735 -9.14438 -8.81736 -8.58917 -8.48950 -7.98350 -6.19083 -4.28441 0.44849 1.06927 2.61335 2.78896 3.11243 3.21590 3.28760 3.30957 3.64123 3.95359 4.04753 4.17960 4.29232 4.43223 4.58696 4.69015 4.71078 5.00429 5.05622 5.12934 5.16672 5.41788 5.44101 5.45043 5.60339 5.66221 5.71027 5.77257 5.93638 6.03821 6.07037 6.13439 6.29574 6.35024 6.43566 6.54189 6.94427 6.98821 7.05117 7.14393 7.26206 7.40527 7.52405 7.62673 7.76258 7.80465 8.06906 8.18389 8.46393 8.64393 8.89776 9.38525 10.86203 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003528 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.834955 B = 7935.674560 C = 9207.710519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.567 3.433 15 O -0.553 6.553 16 C -0.003 4.003 17 N -0.383 5.383 18 C 0.005 3.995 19 C 0.104 3.896 20 N -0.443 5.443 21 C 0.367 3.633 22 N -0.639 5.639 23 C 0.510 3.490 24 O -0.481 6.481 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.146 4.146 28 C -0.145 4.145 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.437 0.563 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 7.063 8.207 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.315 5.315 14 C 0.351 3.649 15 O -0.434 6.434 16 C -0.150 4.150 17 N -0.100 5.100 18 C -0.159 4.159 19 C -0.060 4.060 20 N -0.164 5.164 21 C 0.131 3.869 22 N -0.299 5.299 23 C 0.296 3.704 24 O -0.350 6.350 25 C -0.086 4.086 26 C -0.184 4.184 27 C -0.204 4.204 28 C -0.203 4.203 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.192 0.808 37 H 0.192 0.808 38 H 0.291 0.709 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.590 7.321 7.827 16.534 hybrid contribution 1.492 -0.274 0.139 1.523 sum -11.098 7.048 7.966 15.371 Atomic orbital electron populations 1.21850 0.98378 0.98317 1.01012 1.21953 0.92605 0.99505 1.02666 1.18974 0.94681 0.89373 0.80409 0.92805 1.21208 0.90441 1.39168 1.06607 0.91883 1.24861 0.98717 0.94646 0.95276 1.69877 1.35197 1.37396 1.09432 0.86435 0.84706 0.78549 0.77383 1.20483 1.21052 1.19803 1.46398 1.13550 1.52534 1.18996 1.17448 0.83675 0.79182 0.84626 1.90335 1.51396 1.62276 1.39373 1.21964 0.92719 1.03889 0.96414 1.68297 1.29800 1.13267 0.98622 1.23653 0.97497 0.97950 0.96811 1.23996 0.90637 0.94144 0.97263 1.68639 1.31806 1.17881 0.98045 1.19361 0.88253 0.91076 0.88212 1.44735 1.21683 1.47223 1.16304 1.21080 0.81090 0.78446 0.89760 1.90753 1.71514 1.40754 1.32007 1.20825 0.95573 0.98650 0.93547 1.21672 0.95898 0.99114 1.01697 1.21927 1.00602 1.01576 0.96252 1.21920 1.02099 0.93884 1.02365 0.94568 0.92940 0.95624 0.87930 0.94797 0.92488 0.76323 0.80809 0.80829 0.70871 0.91908 0.91763 0.91911 0.91241 0.90957 0.92058 0.92077 0.90955 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.37 2.24 -69.08 -0.16 6.22 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.67 11.28 55.43 0.63 -23.05 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.67 -13.70 5.01 -55.89 -0.28 -13.98 16 14 C 0.57 10.96 6.36 -12.34 -0.08 10.88 16 15 O -0.55 -11.09 10.77 5.32 0.06 -11.03 16 16 C 0.00 -0.06 6.77 -82.66 -0.56 -0.62 16 17 N -0.38 -5.81 9.71 -9.50 -0.09 -5.91 16 18 C 0.00 0.06 11.21 -17.38 -0.19 -0.14 16 19 C 0.10 1.21 11.22 -17.26 -0.19 1.02 16 20 N -0.44 -7.00 8.06 -11.92 -0.10 -7.10 16 21 C 0.37 6.16 7.42 -154.48 -1.15 5.01 16 22 N -0.64 -10.16 5.05 -11.18 -0.06 -10.22 16 23 C 0.51 7.67 6.44 -10.99 -0.07 7.60 16 24 O -0.48 -8.39 14.26 5.57 0.08 -8.31 16 25 C -0.08 -0.94 0.87 -155.67 -0.14 -1.08 16 26 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 27 C -0.15 -1.53 8.37 37.15 0.31 -1.22 16 28 C -0.15 -1.48 8.37 37.16 0.31 -1.17 16 29 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 30 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.40 7.73 7.90 -40.82 -0.32 7.41 16 36 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.44 7.00 4.03 -40.96 -0.17 6.84 16 39 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.07 0.81 7.57 -51.93 -0.39 0.41 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -30.19 379.45 -7.78 -37.96 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -6.86 Total: 13.28 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.85 Total: 7.55 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.10 Total: -60.26 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.14 Total: -19.34 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.19 -7.78 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358060080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.948 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds