Wall clock time and date at job start Tue Mar 31 2020 19:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 H 1.08995 * 109.46803 * 305.00614 * 3 2 1 5 5 C 1.50695 * 109.47120 * 185.00024 * 3 2 1 6 6 H 1.07996 * 119.99782 * 240.00226 * 5 3 2 7 7 C 1.37877 * 119.99982 * 59.72679 * 5 3 2 8 8 N 1.31517 * 120.00217 * 0.27518 * 7 5 3 9 9 Si 1.86803 * 120.00134 * 180.27194 * 7 5 3 10 10 H 1.48496 * 109.46890 * 89.99958 * 9 7 5 11 11 H 1.48494 * 109.47211 * 210.00095 * 9 7 5 12 12 H 1.48499 * 109.46708 * 330.00260 * 9 7 5 13 13 N 1.46503 * 109.46569 * 65.00257 * 3 2 1 14 14 C 1.34777 * 119.99530 * 274.99830 * 13 3 2 15 15 O 1.21552 * 120.00712 * 0.02562 * 14 13 3 16 16 C 1.47820 * 119.99493 * 180.02562 * 14 13 3 17 17 N 1.33012 * 120.15774 * 354.77122 * 16 14 13 18 18 C 1.31736 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.38802 * 120.31333 * 359.97438 * 18 17 16 20 20 N 1.32028 * 120.30942 * 359.97438 * 19 18 17 21 21 C 1.32744 * 119.99561 * 359.77618 * 20 19 18 22 22 N 1.38804 * 120.15669 * 180.23595 * 21 20 19 23 23 C 1.34784 * 120.00282 * 5.72588 * 22 21 20 24 24 O 1.21268 * 119.99549 * 0.02562 * 23 22 21 25 25 C 1.50693 * 120.00308 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.47300 * 179.97438 * 25 23 22 27 27 C 1.52993 * 109.47426 * 300.00027 * 25 23 22 28 28 C 1.53003 * 109.46931 * 60.00108 * 25 23 22 29 29 H 1.09002 * 109.47034 * 299.99587 * 1 2 3 30 30 H 1.08997 * 109.47259 * 59.99810 * 1 2 3 31 31 H 1.09008 * 109.47242 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47034 * 240.00413 * 2 1 3 33 33 H 1.08997 * 109.47259 * 120.00189 * 2 1 3 34 34 H 0.96995 * 120.00081 * 179.97438 * 8 7 5 35 35 H 0.96994 * 120.00247 * 95.00536 * 13 3 2 36 36 H 1.07998 * 119.84179 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.84479 * 180.02562 * 19 18 17 38 38 H 0.96998 * 120.00247 * 185.72520 * 22 21 20 39 39 H 1.09007 * 109.46849 * 60.00095 * 26 25 23 40 40 H 1.08993 * 109.47785 * 180.02562 * 26 25 23 41 41 H 1.09005 * 109.47259 * 300.00504 * 26 25 23 42 42 H 1.09003 * 109.47079 * 59.99766 * 27 25 23 43 43 H 1.09001 * 109.47321 * 179.97438 * 27 25 23 44 44 H 1.08999 * 109.47204 * 299.99757 * 27 25 23 45 45 H 1.09004 * 109.47425 * 60.00196 * 28 25 23 46 46 H 1.09002 * 109.47127 * 179.97438 * 28 25 23 47 47 H 1.08994 * 109.47122 * 300.00077 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1435 0.8733 -1.2253 8 7 3.4064 0.3320 -2.1704 9 14 6.0055 0.8687 -1.3752 10 1 6.5493 -0.3632 -0.7493 11 1 6.3866 0.9049 -2.8099 12 1 6.5604 2.0609 -0.6853 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3414 2.6318 0.4324 16 6 0.0443 3.3255 2.6300 17 7 0.8484 3.2733 3.6882 18 6 0.4973 3.8641 4.8121 19 6 -0.7101 4.5434 4.8990 20 7 -1.5171 4.6039 3.8559 21 6 -1.1733 4.0171 2.7159 22 7 -2.0170 4.0827 1.6156 23 6 -3.1321 4.8382 1.6655 24 8 -3.3980 5.4609 2.6716 25 6 -4.0478 4.9099 0.4709 26 6 -5.2300 5.8276 0.7888 27 6 -3.2783 5.4658 -0.7289 28 6 -4.5652 3.5085 0.1401 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8296 -0.0693 -2.9455 35 1 2.2719 2.1231 1.9978 36 1 1.1519 3.8198 5.6699 37 1 -0.9902 5.0254 5.8239 38 1 -1.8041 3.5850 0.8108 39 1 -4.8617 6.8261 1.0247 40 1 -5.8926 5.8792 -0.0751 41 1 -5.7782 5.4312 1.6435 42 1 -2.4363 4.8116 -0.9553 43 1 -3.9405 5.5172 -1.5932 44 1 -2.9097 6.4641 -0.4933 45 1 -5.1136 3.1125 0.9949 46 1 -5.2280 3.5604 -0.7238 47 1 -3.7233 2.8544 -0.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358060080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:46 Heat of formation + Delta-G solvation = -42.694567 kcal Electronic energy + Delta-G solvation = -29936.961677 eV Core-core repulsion = 25926.375229 eV Total energy + Delta-G solvation = -4010.586447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.75300 -41.07402 -40.47474 -37.29698 -36.81056 -36.27975 -35.03993 -34.27296 -32.86362 -31.54092 -29.03297 -28.32249 -28.12806 -26.70720 -26.07555 -24.88933 -23.52435 -22.65858 -21.36457 -20.68994 -19.62948 -19.22450 -18.54305 -17.88057 -17.52553 -17.18379 -16.88203 -16.36526 -16.26984 -16.15775 -15.68865 -15.51869 -15.02307 -14.88558 -14.59543 -14.53358 -14.47834 -13.92129 -13.50450 -13.41584 -13.17549 -13.16018 -12.98944 -12.91305 -12.71373 -12.68826 -12.67462 -12.61478 -12.19082 -12.08770 -11.98256 -11.95317 -11.76629 -11.59346 -11.25348 -11.10400 -11.05418 -10.54010 -9.98336 -9.86206 -9.49816 -8.16502 -6.32905 -0.70127 -0.01956 1.45355 1.46209 1.49162 1.56033 1.67138 1.74546 2.20760 2.45976 2.76486 2.99065 3.11685 3.13844 3.26376 3.54460 3.75432 3.83805 3.98320 4.06325 4.23338 4.36596 4.51014 4.57188 4.64421 4.64657 4.74550 4.75734 4.86660 4.89893 4.94313 4.99269 5.06557 5.16486 5.23618 5.24561 5.27410 5.35067 5.41982 5.48802 5.59059 5.76754 5.85762 5.92345 6.14313 6.26663 6.60410 6.71554 6.83988 6.99283 7.26105 7.41635 8.88478 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003528 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.834955 B = 7935.674560 C = 9207.710519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.014 0.986 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.674 5.674 14 C 0.566 3.434 15 O -0.568 6.568 16 C -0.031 4.031 17 N -0.400 5.400 18 C 0.023 3.977 19 C 0.120 3.880 20 N -0.470 5.470 21 C 0.350 3.650 22 N -0.644 5.644 23 C 0.505 3.495 24 O -0.509 6.509 25 C -0.080 4.080 26 C -0.121 4.121 27 C -0.143 4.143 28 C -0.142 4.142 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.408 0.592 36 H 0.224 0.776 37 H 0.222 0.778 38 H 0.434 0.566 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 7.716 10.024 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.032 0.968 5 C -0.590 4.590 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.352 3.648 15 O -0.449 6.449 16 C -0.174 4.174 17 N -0.116 5.116 18 C -0.143 4.143 19 C -0.045 4.045 20 N -0.190 5.190 21 C 0.116 3.884 22 N -0.303 5.303 23 C 0.293 3.707 24 O -0.381 6.381 25 C -0.083 4.083 26 C -0.179 4.179 27 C -0.201 4.201 28 C -0.199 4.199 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.241 0.759 37 H 0.239 0.761 38 H 0.287 0.713 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.741 7.971 9.618 17.843 hybrid contribution 1.504 -0.391 -0.241 1.573 sum -11.237 7.580 9.378 16.482 Atomic orbital electron populations 1.21686 0.96646 0.99388 1.00427 1.21798 0.94075 0.98784 1.01404 1.18559 0.93857 0.89434 0.80703 0.96830 1.21523 0.91406 1.39159 1.06877 0.91549 1.25654 1.02975 0.94277 0.94951 1.70009 1.36872 1.37989 1.09854 0.85434 0.79510 0.78744 0.77199 1.19782 1.21035 1.19272 1.46123 1.14411 1.53433 1.18033 1.17797 0.82894 0.78554 0.85569 1.90324 1.51677 1.62526 1.40378 1.21416 0.93804 1.05989 0.96204 1.68283 1.29844 1.14237 0.99259 1.24511 0.97755 0.95391 0.96627 1.24894 0.89790 0.92327 0.97502 1.68725 1.33260 1.18463 0.98589 1.19484 0.88365 0.91602 0.88926 1.44810 1.22030 1.47309 1.16187 1.21809 0.80949 0.77475 0.90506 1.90714 1.72145 1.41875 1.33352 1.20926 0.95355 0.99833 0.92206 1.21661 0.95510 0.98025 1.02673 1.21925 1.00518 1.00766 0.96854 1.21921 1.01931 0.92700 1.03397 0.94352 0.94251 0.93610 0.90428 0.94558 0.92479 0.75655 0.75936 0.76140 0.71268 0.92807 0.88889 0.92615 0.92970 0.88266 0.92450 0.92194 0.88305 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.51 71.98 0.61 -4.64 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.62 16 3 C 0.28 13.74 2.24 44.24 0.10 13.84 16 4 H 0.01 0.79 7.58 -2.39 -0.02 0.77 16 5 C -0.55 -28.74 8.73 25.60 0.22 -28.52 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.07 11.28 21.45 0.24 -49.82 16 9 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 N -0.67 -28.40 5.01 -449.00 -2.25 -30.65 16 14 C 0.57 22.66 6.36 86.78 0.55 23.21 16 15 O -0.57 -23.94 10.77 -3.88 -0.04 -23.99 16 16 C -0.03 -1.07 6.77 42.00 0.28 -0.78 16 17 N -0.40 -11.57 9.71 -183.96 -1.79 -13.36 16 18 C 0.02 0.45 11.21 84.84 0.95 1.40 16 19 C 0.12 2.42 11.22 84.80 0.95 3.37 16 20 N -0.47 -14.30 8.06 -191.61 -1.54 -15.85 16 21 C 0.35 11.85 7.42 133.31 0.99 12.83 16 22 N -0.64 -21.19 5.05 -307.68 -1.55 -22.74 16 23 C 0.50 15.45 6.44 87.65 0.56 16.01 16 24 O -0.51 -17.92 14.26 -2.99 -0.04 -17.96 16 25 C -0.08 -1.79 0.87 -52.93 -0.05 -1.84 16 26 C -0.12 -2.30 7.76 71.98 0.56 -1.74 16 27 C -0.14 -2.96 8.37 71.98 0.60 -2.36 16 28 C -0.14 -2.80 8.37 71.98 0.60 -2.20 16 29 H 0.04 1.58 5.64 -2.39 -0.01 1.57 16 30 H 0.04 1.74 7.84 -2.39 -0.02 1.72 16 31 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 4.11 5.94 -2.39 -0.01 4.09 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.41 15.95 7.90 -92.71 -0.73 15.22 16 36 H 0.22 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.43 14.68 4.03 -94.88 -0.38 14.30 16 39 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 42 H 0.05 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 1.21 7.56 -2.39 -0.02 1.19 16 Total: -1.00 -68.66 379.45 2.50 -66.16 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.11 Total: 40.20 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 7.56 Total: 24.58 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.89 Total: -132.42 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.08 Total: -41.95 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -68.66 2.50 -66.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358060080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.464 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds