Wall clock time and date at job start Tue Mar 31 2020 19:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08998 * 109.46861 * 54.99834 * 3 2 1 5 5 C 1.52999 * 109.47141 * 294.99500 * 3 2 1 6 6 C 1.50700 * 109.46942 * 174.99649 * 3 2 1 7 7 N 1.31801 * 119.03536 * 59.73005 * 6 3 2 8 8 C 1.32255 * 120.90073 * 179.75883 * 7 6 3 9 9 C 1.39292 * 119.00781 * 0.50788 * 8 7 6 10 10 N 1.39779 * 120.87450 * 179.77506 * 9 8 7 11 11 C 1.34776 * 119.99478 * 212.42638 * 10 9 8 12 12 O 1.21368 * 120.00408 * 5.26610 * 11 10 9 13 13 C 1.49356 * 119.99330 * 185.26284 * 11 10 9 14 14 O 1.21354 * 120.00422 * 0.02562 * 13 11 10 15 15 N 1.34781 * 119.99634 * 180.02562 * 13 11 10 16 16 C 1.46503 * 119.99825 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.47140 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47590 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47499 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99779 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99720 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00282 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99535 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47213 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47123 * 120.00017 * 23 21 19 26 26 H 1.48502 * 109.46714 * 239.99799 * 23 21 19 27 27 C 1.39290 * 118.24936 * 359.74460 * 9 8 7 28 28 N 1.31800 * 119.02934 * 240.00034 * 6 3 2 29 29 H 1.09001 * 109.47771 * 300.00496 * 1 2 3 30 30 H 1.09005 * 109.46668 * 60.00421 * 1 2 3 31 31 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99715 * 2 1 3 33 33 H 1.09005 * 109.46668 * 119.99579 * 2 1 3 34 34 H 1.08995 * 109.46813 * 60.00229 * 5 3 2 35 35 H 1.09001 * 109.46805 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47188 * 300.00369 * 5 3 2 37 37 H 1.08002 * 120.49235 * 180.23116 * 8 7 6 38 38 H 0.97004 * 119.99799 * 32.42619 * 10 9 8 39 39 H 0.96996 * 119.99834 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47446 * 299.99979 * 16 15 13 41 41 H 1.09002 * 109.46725 * 59.99812 * 16 15 13 42 42 H 1.09007 * 109.47491 * 300.00430 * 17 16 15 43 43 H 1.09002 * 109.47006 * 59.99906 * 17 16 15 44 44 H 1.09000 * 109.47184 * 300.00370 * 18 17 16 45 45 H 1.09002 * 109.47060 * 59.99894 * 18 17 16 46 46 H 0.96997 * 119.99942 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.49570 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 7 4.2605 0.8355 -0.7980 8 6 5.5811 0.8183 -0.7283 9 6 6.2091 1.4467 0.3446 10 7 7.6021 1.4483 0.4595 11 6 8.1777 1.4335 1.6781 12 8 7.4907 1.3223 2.6724 13 6 9.6610 1.5539 1.8047 14 8 10.3479 1.6655 0.8106 15 7 10.2367 1.5386 3.0233 16 6 11.6917 1.6561 3.1476 17 6 12.0825 1.6119 4.6261 18 6 13.6019 1.7353 4.7560 19 6 13.9869 1.6912 6.2124 20 1 13.2241 1.5853 6.9696 21 6 15.3129 1.7860 6.5780 22 7 16.2418 1.9144 5.6560 23 14 15.7901 1.7305 8.3833 24 1 14.5683 1.5813 9.2139 25 1 16.6948 0.5772 8.6209 26 1 16.4867 2.9898 8.7499 27 6 5.4123 2.0739 1.2995 28 7 4.0979 2.0500 1.1540 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5491 2.1252 -1.3970 35 1 1.9983 3.1543 -1.3071 36 1 2.0699 1.5874 -2.1491 37 1 6.1637 0.3206 -1.4894 38 1 8.1545 1.4601 -0.3378 39 1 9.6876 1.4498 3.8180 40 1 12.1693 0.8303 2.6204 41 1 12.0182 2.6013 2.7139 42 1 11.6049 2.4380 5.1531 43 1 11.7559 0.6669 5.0602 44 1 14.0799 0.9095 4.2291 45 1 13.9281 2.6805 4.3221 46 1 17.1746 1.9815 5.9133 47 1 5.8611 2.5724 2.1459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361819877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:00 Heat of formation + Delta-G solvation = -44.550060 kcal Electronic energy + Delta-G solvation = -26923.942770 eV Core-core repulsion = 22913.275862 eV Total energy + Delta-G solvation = -4010.666908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96061 -40.76529 -38.91627 -37.01709 -36.03058 -35.28446 -34.14346 -33.42086 -31.37591 -31.28370 -29.51171 -27.42798 -26.13078 -25.26823 -24.78708 -23.45666 -22.53040 -21.04554 -20.81020 -20.43324 -19.10229 -18.03385 -17.60067 -17.30055 -16.50312 -16.42677 -16.15062 -15.52155 -15.33226 -15.17658 -14.97027 -14.60292 -14.49278 -14.19024 -14.05195 -13.83255 -13.67292 -13.09579 -12.57409 -12.37978 -12.29535 -12.09219 -12.00705 -11.94204 -11.91551 -11.69111 -11.38608 -11.23745 -11.09933 -11.02382 -10.97161 -10.84529 -10.62745 -10.07887 -9.98422 -9.65647 -9.48445 -9.17995 -9.16590 -8.93674 -8.42807 -6.07368 -4.10532 0.24055 0.64059 1.18201 1.90528 2.88291 3.24810 3.27140 3.31753 3.35105 3.38811 3.48445 3.71561 4.00657 4.18509 4.40034 4.40726 4.47774 4.56727 4.62568 4.95328 5.01652 5.10593 5.18221 5.28955 5.30364 5.41602 5.46815 5.49666 5.58176 5.58298 5.63342 5.65337 5.90573 5.94746 5.97456 6.02956 6.07706 6.38093 6.44652 6.53250 6.62891 6.86998 7.07961 7.36444 7.56077 7.66716 7.67591 7.79253 7.90809 8.31513 8.96124 9.54312 11.03884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.001530 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.442077 B =18296.280855 C =18888.449275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.021 4.021 4 H 0.097 0.903 5 C -0.142 4.142 6 C 0.305 3.695 7 N -0.491 5.491 8 C 0.134 3.866 9 C 0.037 3.963 10 N -0.638 5.638 11 C 0.511 3.489 12 O -0.497 6.497 13 C 0.505 3.495 14 O -0.519 6.519 15 N -0.686 5.686 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.153 3.847 28 N -0.495 5.495 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.174 0.826 38 H 0.428 0.572 39 H 0.412 0.588 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.868 -1.588 -15.750 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.041 4.041 4 H 0.115 0.885 5 C -0.200 4.200 6 C 0.038 3.962 7 N -0.204 5.204 8 C -0.036 4.036 9 C -0.062 4.062 10 N -0.286 5.286 11 C 0.294 3.706 12 O -0.370 6.370 13 C 0.283 3.717 14 O -0.396 6.396 15 N -0.338 5.338 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.014 4.014 19 C -0.562 4.562 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.015 4.015 28 N -0.208 5.208 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.191 0.809 38 H 0.267 0.733 39 H 0.249 0.751 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -29.570 -1.556 -15.791 33.559 hybrid contribution 1.597 -0.074 1.094 1.938 sum -27.973 -1.630 -14.697 31.641 Atomic orbital electron populations 1.21817 0.95086 1.01945 1.02108 1.21520 0.96131 0.94599 1.02860 1.20019 0.85323 0.98308 1.00498 0.88517 1.21840 1.01780 1.00190 0.96193 1.23206 0.97812 0.89736 0.85494 1.68165 1.05928 1.18084 1.28252 1.23161 0.90650 0.93376 0.96365 1.19576 0.84744 1.01516 1.00402 1.42991 1.04194 1.71385 1.10057 1.20697 0.89977 0.76738 0.83235 1.90799 1.64499 1.45189 1.36470 1.19601 0.87140 0.79792 0.85125 1.90798 1.63731 1.48509 1.36568 1.46090 1.10287 1.69835 1.07554 1.21918 0.76074 1.02612 1.00276 1.21943 1.01673 1.01419 0.91098 1.19038 0.87252 0.97699 0.97373 1.21229 0.92292 1.50421 0.92242 0.92498 1.25021 0.96680 0.95165 0.97520 1.69966 1.00610 1.50031 1.32628 0.86521 0.78551 0.77641 0.85199 1.19717 1.20975 1.20975 1.23447 0.88376 0.92176 0.97542 1.68347 1.11696 1.18382 1.22394 0.92549 0.92207 0.92482 0.90750 0.92121 0.91324 0.92786 0.91442 0.80855 0.73259 0.75147 0.90834 0.90826 0.92336 0.92351 0.96163 0.96150 0.92939 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.40 16 2 C -0.11 -0.75 5.25 -26.73 -0.14 -0.89 16 3 C -0.02 -0.16 2.72 -91.77 -0.25 -0.41 16 4 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 5 C -0.14 -0.87 8.84 37.16 0.33 -0.54 16 6 C 0.30 3.01 6.34 -157.18 -1.00 2.01 16 7 N -0.49 -4.61 9.87 -10.57 -0.10 -4.71 16 8 C 0.13 1.07 11.26 -16.98 -0.19 0.88 16 9 C 0.04 0.34 6.33 -83.45 -0.53 -0.19 16 10 N -0.64 -5.55 5.35 -10.11 -0.05 -5.60 16 11 C 0.51 5.70 7.66 -11.63 -0.09 5.61 16 12 O -0.50 -6.35 14.17 5.48 0.08 -6.27 16 13 C 0.50 6.52 7.89 -11.63 -0.09 6.43 16 14 O -0.52 -7.74 16.48 5.49 0.09 -7.65 16 15 N -0.69 -9.11 5.55 -60.76 -0.34 -9.45 16 16 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 17 C -0.12 -2.27 5.27 -26.74 -0.14 -2.41 16 18 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 19 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 1.64 9.94 -16.97 -0.17 1.47 16 28 N -0.50 -5.52 10.29 -10.57 -0.11 -5.62 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 37 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.43 2.89 8.30 -40.82 -0.34 2.55 16 39 H 0.41 4.93 7.94 -40.82 -0.32 4.60 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.18 1.92 6.47 -52.49 -0.34 1.58 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -31.99 397.86 -8.34 -40.33 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.13 Total: 1.58 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.48 Total: 0.72 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.13 Total: -50.85 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.17 Total: -13.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.99 -8.34 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361819877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.221 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds