Wall clock time and date at job start Tue Mar 31 2020 19:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.08998 * 109.46861 * 54.99834 * 3 2 1 5 5 C 1.52999 * 109.47141 * 294.99500 * 3 2 1 6 6 C 1.50700 * 109.46942 * 174.99649 * 3 2 1 7 7 N 1.31801 * 119.03536 * 59.73005 * 6 3 2 8 8 C 1.32255 * 120.90073 * 179.75883 * 7 6 3 9 9 C 1.39292 * 119.00781 * 0.50788 * 8 7 6 10 10 N 1.39779 * 120.87450 * 179.77506 * 9 8 7 11 11 C 1.34776 * 119.99478 * 212.42638 * 10 9 8 12 12 O 1.21368 * 120.00408 * 5.26610 * 11 10 9 13 13 C 1.49356 * 119.99330 * 185.26284 * 11 10 9 14 14 O 1.21354 * 120.00422 * 0.02562 * 13 11 10 15 15 N 1.34781 * 119.99634 * 180.02562 * 13 11 10 16 16 C 1.46503 * 119.99825 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.47140 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47590 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47499 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99779 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99720 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00282 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99535 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47213 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47123 * 120.00017 * 23 21 19 26 26 H 1.48502 * 109.46714 * 239.99799 * 23 21 19 27 27 C 1.39290 * 118.24936 * 359.74460 * 9 8 7 28 28 N 1.31800 * 119.02934 * 240.00034 * 6 3 2 29 29 H 1.09001 * 109.47771 * 300.00496 * 1 2 3 30 30 H 1.09005 * 109.46668 * 60.00421 * 1 2 3 31 31 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99715 * 2 1 3 33 33 H 1.09005 * 109.46668 * 119.99579 * 2 1 3 34 34 H 1.08995 * 109.46813 * 60.00229 * 5 3 2 35 35 H 1.09001 * 109.46805 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47188 * 300.00369 * 5 3 2 37 37 H 1.08002 * 120.49235 * 180.23116 * 8 7 6 38 38 H 0.97004 * 119.99799 * 32.42619 * 10 9 8 39 39 H 0.96996 * 119.99834 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47446 * 299.99979 * 16 15 13 41 41 H 1.09002 * 109.46725 * 59.99812 * 16 15 13 42 42 H 1.09007 * 109.47491 * 300.00430 * 17 16 15 43 43 H 1.09002 * 109.47006 * 59.99906 * 17 16 15 44 44 H 1.09000 * 109.47184 * 300.00370 * 18 17 16 45 45 H 1.09002 * 109.47060 * 59.99894 * 18 17 16 46 46 H 0.96997 * 119.99942 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.49570 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 7 4.2605 0.8355 -0.7980 8 6 5.5811 0.8183 -0.7283 9 6 6.2091 1.4467 0.3446 10 7 7.6021 1.4483 0.4595 11 6 8.1777 1.4335 1.6781 12 8 7.4907 1.3223 2.6724 13 6 9.6610 1.5539 1.8047 14 8 10.3479 1.6655 0.8106 15 7 10.2367 1.5386 3.0233 16 6 11.6917 1.6561 3.1476 17 6 12.0825 1.6119 4.6261 18 6 13.6019 1.7353 4.7560 19 6 13.9869 1.6912 6.2124 20 1 13.2241 1.5853 6.9696 21 6 15.3129 1.7860 6.5780 22 7 16.2418 1.9144 5.6560 23 14 15.7901 1.7305 8.3833 24 1 14.5683 1.5813 9.2139 25 1 16.6948 0.5772 8.6209 26 1 16.4867 2.9898 8.7499 27 6 5.4123 2.0739 1.2995 28 7 4.0979 2.0500 1.1540 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5491 2.1252 -1.3970 35 1 1.9983 3.1543 -1.3071 36 1 2.0699 1.5874 -2.1491 37 1 6.1637 0.3206 -1.4894 38 1 8.1545 1.4601 -0.3378 39 1 9.6876 1.4498 3.8180 40 1 12.1693 0.8303 2.6204 41 1 12.0182 2.6013 2.7139 42 1 11.6049 2.4380 5.1531 43 1 11.7559 0.6669 5.0602 44 1 14.0799 0.9095 4.2291 45 1 13.9281 2.6805 4.3221 46 1 17.1746 1.9815 5.9133 47 1 5.8611 2.5724 2.1459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361819877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:59 Heat of formation + Delta-G solvation = -66.228200 kcal Electronic energy + Delta-G solvation = -26924.882804 eV Core-core repulsion = 22913.275862 eV Total energy + Delta-G solvation = -4011.606942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.74579 -41.68408 -39.93606 -37.71434 -37.19232 -36.23991 -35.20968 -34.87398 -33.07556 -31.95849 -30.11025 -28.98767 -27.04602 -26.03202 -25.79956 -24.59014 -23.59470 -22.38654 -21.78220 -21.23689 -20.13626 -18.87025 -18.60062 -18.29308 -18.00069 -17.46843 -17.20070 -16.63070 -16.38802 -16.18380 -16.01005 -15.77386 -15.36962 -15.24155 -14.90799 -14.81067 -14.32599 -14.29451 -13.78027 -13.60647 -13.53542 -13.11904 -13.04599 -12.83638 -12.79287 -12.56523 -12.55440 -12.42755 -12.38046 -11.99799 -11.96834 -11.70547 -11.64351 -11.58286 -11.52981 -11.22941 -10.92872 -10.55341 -10.37813 -10.35193 -9.68716 -8.19849 -6.30325 -0.54342 -0.08582 0.25920 0.97072 1.41305 1.42437 1.54790 1.89887 2.32461 2.42912 2.57981 2.82223 3.03874 3.14568 3.15053 3.35590 3.68566 3.90472 3.98734 4.06781 4.07155 4.18559 4.36598 4.52470 4.52665 4.61535 4.63935 4.70267 4.78496 4.83254 4.91862 5.00833 5.10332 5.14646 5.16303 5.16994 5.19140 5.27846 5.45855 5.50155 5.51825 5.59690 5.71364 5.80895 5.84919 6.12661 6.23868 6.44908 6.74568 6.87096 6.94593 7.39269 8.92093 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.001530 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.442077 B =18296.280855 C =18888.449275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.023 4.023 4 H 0.095 0.905 5 C -0.136 4.136 6 C 0.298 3.702 7 N -0.499 5.499 8 C 0.145 3.855 9 C 0.031 3.969 10 N -0.620 5.620 11 C 0.520 3.480 12 O -0.514 6.514 13 C 0.510 3.490 14 O -0.538 6.538 15 N -0.682 5.682 16 C 0.127 3.873 17 C -0.107 4.107 18 C 0.024 3.976 19 C -0.542 4.542 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.139 3.861 28 N -0.517 5.517 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.210 0.790 38 H 0.439 0.561 39 H 0.421 0.579 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.067 0.933 44 H -0.003 1.003 45 H -0.003 1.003 46 H 0.263 0.737 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.536 -2.058 -16.009 34.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.043 4.043 4 H 0.113 0.887 5 C -0.193 4.193 6 C 0.031 3.969 7 N -0.212 5.212 8 C -0.024 4.024 9 C -0.068 4.068 10 N -0.269 5.269 11 C 0.302 3.698 12 O -0.388 6.388 13 C 0.290 3.710 14 O -0.416 6.416 15 N -0.334 5.334 16 C 0.004 3.996 17 C -0.145 4.145 18 C -0.014 4.014 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.029 4.029 28 N -0.231 5.231 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.281 0.719 39 H 0.258 0.742 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.072 0.928 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -31.272 -2.024 -16.064 35.215 hybrid contribution 2.081 0.069 1.103 2.356 sum -29.190 -1.955 -14.961 32.860 Atomic orbital electron populations 1.21801 0.93623 1.02467 1.02735 1.21466 0.97339 0.93788 1.01967 1.20138 0.84032 0.98949 1.01203 0.88670 1.21800 1.02933 0.99478 0.95129 1.23683 0.98925 0.89168 0.85162 1.68268 1.06493 1.18275 1.28121 1.23741 0.90420 0.92049 0.96214 1.19560 0.84515 1.02031 1.00681 1.42795 1.04207 1.70218 1.09647 1.20223 0.88813 0.76950 0.83771 1.90808 1.64415 1.46377 1.37196 1.19799 0.87889 0.78874 0.84466 1.90794 1.64440 1.49248 1.37114 1.45869 1.09220 1.70019 1.08326 1.21522 0.77630 1.02189 0.98237 1.21648 0.97489 1.02246 0.93131 1.18942 0.91221 0.95506 0.95722 1.21717 0.92721 1.49796 0.93753 0.91822 1.25942 0.96824 0.94829 1.02163 1.70093 1.01006 1.51218 1.34937 0.85428 0.78460 0.77639 0.79688 1.18501 1.20596 1.20600 1.23451 0.88705 0.92740 0.97976 1.68354 1.12000 1.19415 1.23319 0.92362 0.91127 0.92038 0.91066 0.93524 0.89465 0.93383 0.91777 0.77329 0.71939 0.74172 0.91354 0.91376 0.91420 0.91446 0.98428 0.98420 0.92818 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 71.98 0.70 -0.55 16 2 C -0.11 -1.33 5.25 30.59 0.16 -1.17 16 3 C -0.02 -0.32 2.72 -11.54 -0.03 -0.35 16 4 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 5 C -0.14 -1.47 8.84 71.98 0.64 -0.83 16 6 C 0.30 5.67 6.34 138.75 0.88 6.55 16 7 N -0.50 -8.63 9.87 -187.34 -1.85 -10.48 16 8 C 0.15 2.03 11.26 84.88 0.96 2.98 16 9 C 0.03 0.53 6.33 38.38 0.24 0.78 16 10 N -0.62 -9.79 5.35 -304.25 -1.63 -11.42 16 11 C 0.52 10.99 7.66 87.24 0.67 11.66 16 12 O -0.51 -12.69 14.17 -3.30 -0.05 -12.74 16 13 C 0.51 12.62 7.89 87.24 0.69 13.31 16 14 O -0.54 -15.47 16.48 -3.26 -0.05 -15.53 16 15 N -0.68 -17.41 5.55 -464.50 -2.58 -19.98 16 16 C 0.13 3.95 5.67 86.38 0.49 4.44 16 17 C -0.11 -3.89 5.27 30.59 0.16 -3.73 16 18 C 0.02 1.18 4.97 29.85 0.15 1.33 16 19 C -0.54 -29.58 9.11 25.60 0.23 -29.34 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 21 C 0.00 0.02 5.46 84.66 0.46 0.48 16 22 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 23 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 C 0.14 2.93 9.94 84.88 0.84 3.78 16 28 N -0.52 -11.45 10.29 -187.34 -1.93 -13.37 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.44 6.57 -2.38 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 33 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.09 0.61 6.56 -2.39 -0.02 0.59 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.75 8.01 -2.39 -0.02 0.73 16 37 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.44 5.04 8.30 -92.71 -0.77 4.27 16 39 H 0.42 9.50 7.94 -92.71 -0.74 8.76 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.17 3.73 6.47 -2.91 -0.02 3.72 16 Total: -1.00 -68.80 397.86 0.96 -67.84 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.50 Total: 16.33 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 7.24 Total: 9.33 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -7.70 Total: -110.53 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.10 Total: -28.27 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.80 0.96 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361819877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.612 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds