Wall clock time and date at job start Tue Mar 31 2020 18:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 C 1.52996 * 109.46878 * 239.99810 * 2 1 3 5 5 C 1.50702 * 109.47185 * 120.00031 * 2 1 3 6 6 O 1.21264 * 119.99844 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99773 * 179.97438 * 5 2 1 8 8 C 1.38816 * 119.99742 * 180.02562 * 7 5 2 9 9 N 1.32743 * 120.15379 * 354.52827 * 8 7 5 10 10 C 1.32029 * 119.99521 * 179.97438 * 9 8 7 11 11 C 1.38809 * 120.30680 * 0.02969 * 10 9 8 12 12 N 1.31741 * 120.31226 * 359.97438 * 11 10 9 13 13 C 1.33008 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.47822 * 120.14944 * 180.02562 * 13 12 11 15 15 O 1.21562 * 119.99842 * 185.50169 * 14 13 12 16 16 N 1.34779 * 120.00518 * 5.49586 * 14 13 12 17 17 C 1.46494 * 120.00487 * 180.02562 * 16 14 13 18 18 C 1.52991 * 109.47532 * 180.02562 * 17 16 14 19 19 C 1.52994 * 109.47713 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47618 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99846 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99988 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47072 * 60.00300 * 24 22 20 26 26 H 1.48500 * 109.46854 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47503 * 299.99984 * 24 22 20 28 28 H 1.09009 * 109.47145 * 300.00003 * 1 2 3 29 29 H 1.08998 * 109.47748 * 59.99824 * 1 2 3 30 30 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47028 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47196 * 299.99990 * 3 2 1 33 33 H 1.09001 * 109.47540 * 60.00312 * 3 2 1 34 34 H 1.09002 * 109.47269 * 300.00054 * 4 2 1 35 35 H 1.09000 * 109.47061 * 60.00321 * 4 2 1 36 36 H 1.09004 * 109.47434 * 179.97438 * 4 2 1 37 37 H 0.96997 * 120.00306 * 0.02562 * 7 5 2 38 38 H 1.08001 * 119.84803 * 179.97438 * 10 9 8 39 39 H 1.07997 * 119.84482 * 179.69641 * 11 10 9 40 40 H 0.97007 * 119.99515 * 0.02562 * 16 14 13 41 41 H 1.09009 * 109.46848 * 300.00289 * 17 16 14 42 42 H 1.08997 * 109.47478 * 59.99694 * 17 16 14 43 43 H 1.09001 * 109.47181 * 300.00125 * 18 17 16 44 44 H 1.09006 * 109.47179 * 59.99475 * 18 17 16 45 45 H 1.08998 * 109.47507 * 300.00076 * 19 18 17 46 46 H 1.09006 * 109.46900 * 59.99705 * 19 18 17 47 47 H 0.97006 * 119.99798 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1717 2.0284 7 7 3.3574 -0.8340 1.4434 8 6 3.8201 -1.4888 2.5766 9 7 2.9652 -1.8988 3.5056 10 6 3.4087 -2.5218 4.5819 11 6 4.7676 -2.7508 4.7487 12 7 5.6267 -2.3490 3.8344 13 6 5.1933 -1.7212 2.7448 14 6 6.1543 -1.2694 1.7165 15 8 5.7680 -0.6090 0.7719 16 7 7.4589 -1.5895 1.8262 17 6 8.4114 -1.1414 0.8074 18 6 9.8136 -1.6363 1.1671 19 6 10.8083 -1.1688 0.1028 20 6 12.1896 -1.6558 0.4575 21 1 12.3428 -2.2401 1.3529 22 6 13.2579 -1.3547 -0.3604 23 7 13.0716 -0.6420 -1.4498 24 14 14.9702 -1.9579 0.0798 25 1 14.9720 -3.4416 0.1405 26 1 15.9356 -1.5041 -0.9534 27 1 15.3643 -1.4079 1.4016 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 1.6765 -1.7490 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 3.9877 -0.4653 0.8049 38 1 2.7111 -2.8540 5.3365 39 1 5.1226 -3.2568 5.6343 40 1 7.7672 -2.1168 2.5799 41 1 8.1219 -1.5447 -0.1631 42 1 8.4104 -0.0523 0.7631 43 1 10.1033 -1.2334 2.1376 44 1 9.8143 -2.7255 1.2112 45 1 10.5186 -1.5721 -0.8675 46 1 10.8077 -0.0797 0.0584 47 1 13.8232 -0.4305 -2.0255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361824378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:10 Heat of formation + Delta-G solvation = -31.941234 kcal Electronic energy + Delta-G solvation = -28382.890141 eV Core-core repulsion = 24372.769993 eV Total energy + Delta-G solvation = -4010.120148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93005 -40.22328 -39.42874 -36.26420 -35.85922 -35.21541 -34.21425 -33.35967 -31.48988 -30.67334 -27.68841 -27.52134 -27.12731 -25.75375 -25.13324 -23.15281 -22.73617 -21.17389 -20.51999 -19.88404 -18.49258 -18.00382 -17.71070 -16.68570 -16.38734 -16.18574 -15.64066 -15.50881 -15.45224 -14.91707 -14.81386 -14.49014 -14.25329 -14.08988 -13.92297 -13.68591 -13.62582 -12.73664 -12.56333 -12.36149 -12.30933 -12.03482 -11.92025 -11.90431 -11.83439 -11.82832 -11.30725 -11.28305 -10.93452 -10.89586 -10.82444 -10.68938 -10.48129 -10.27521 -9.92883 -9.53758 -9.22032 -9.12225 -9.10165 -8.69703 -8.40084 -6.05030 -4.08142 0.08567 0.75273 2.33523 2.46599 2.57955 3.01202 3.30373 3.35198 3.37273 3.54991 3.73408 3.79780 4.04523 4.29183 4.41647 4.42367 4.50909 4.69089 4.75018 4.91921 4.95428 5.24879 5.26302 5.30919 5.40428 5.47785 5.53150 5.57730 5.58322 5.66665 5.67305 5.80056 5.87085 5.94309 6.05352 6.09303 6.28450 6.51382 6.68917 6.69544 6.92414 7.03701 7.35734 7.54641 7.58799 7.70702 7.84949 7.93204 8.08284 8.34413 8.98134 9.56242 11.06198 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002275 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.910703 B =12306.799133 C =13886.216143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.146 4.146 4 C -0.146 4.146 5 C 0.511 3.489 6 O -0.475 6.475 7 N -0.642 5.642 8 C 0.373 3.627 9 N -0.441 5.441 10 C 0.114 3.886 11 C 0.008 3.992 12 N -0.382 5.382 13 C -0.015 4.015 14 C 0.578 3.422 15 O -0.548 6.548 16 N -0.692 5.692 17 C 0.112 3.888 18 C -0.122 4.122 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.436 0.564 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.624 -0.735 7.848 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.203 4.203 4 C -0.204 4.204 5 C 0.297 3.703 6 O -0.344 6.344 7 N -0.301 5.301 8 C 0.137 3.863 9 N -0.162 5.162 10 C -0.050 4.050 11 C -0.156 4.156 12 N -0.099 5.099 13 C -0.161 4.161 14 C 0.363 3.637 15 O -0.428 6.428 16 N -0.340 5.340 17 C -0.010 4.010 18 C -0.160 4.160 19 C -0.013 4.013 20 C -0.562 4.562 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.289 0.711 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.248 0.752 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.325 -0.401 7.360 26.376 hybrid contribution 1.490 -0.486 0.449 1.630 sum -23.835 -0.886 7.809 25.098 Atomic orbital electron populations 1.21683 0.91474 1.02986 1.02341 1.20845 0.98210 0.96635 0.92929 1.21926 1.01911 0.93298 1.03172 1.21933 1.01999 1.00544 0.95891 1.21128 0.81573 0.79710 0.87911 1.90768 1.54626 1.43896 1.45139 1.44722 1.10149 1.53468 1.21800 1.19343 0.88660 0.90104 0.88168 1.68698 1.35470 1.10871 1.01151 1.24107 0.95663 0.91241 0.94032 1.23697 0.90908 1.01502 0.99538 1.68241 1.38139 1.04042 0.99439 1.21559 0.91552 1.05677 0.97281 1.17520 0.82609 0.79702 0.83874 1.90379 1.77344 1.41522 1.33513 1.46023 1.06577 1.53400 1.28005 1.21835 0.88710 1.00062 0.90386 1.21913 0.91975 1.00446 1.01683 1.19021 0.92401 0.96843 0.93005 1.21160 0.92570 1.33885 1.08562 0.92643 1.25024 0.99220 0.95152 0.95032 1.69951 1.31513 1.38374 1.13466 0.86635 0.83958 0.79175 0.78096 1.20227 1.21271 1.20218 0.91821 0.91599 0.91832 0.91548 0.90769 0.91953 0.91964 0.90770 0.91459 0.71061 0.80424 0.80411 0.75200 0.91138 0.91119 0.92477 0.92512 0.96233 0.96231 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 7.76 37.16 0.29 -0.76 16 2 C -0.08 -0.76 0.87 -155.66 -0.14 -0.89 16 3 C -0.15 -1.16 8.37 37.16 0.31 -0.85 16 4 C -0.15 -1.19 8.37 37.16 0.31 -0.88 16 5 C 0.51 6.39 6.44 -10.99 -0.07 6.32 16 6 O -0.48 -7.19 14.26 5.57 0.08 -7.11 16 7 N -0.64 -8.28 5.05 -11.18 -0.06 -8.34 16 8 C 0.37 5.06 7.42 -154.47 -1.15 3.92 16 9 N -0.44 -5.73 8.06 -11.91 -0.10 -5.82 16 10 C 0.11 1.01 11.22 -17.26 -0.19 0.82 16 11 C 0.01 0.07 11.21 -17.38 -0.19 -0.13 16 12 N -0.38 -4.38 9.72 -9.50 -0.09 -4.48 16 13 C -0.01 -0.20 6.77 -82.67 -0.56 -0.76 16 14 C 0.58 8.41 7.79 -12.34 -0.10 8.31 16 15 O -0.55 -8.59 13.64 5.31 0.07 -8.51 16 16 N -0.69 -9.86 5.54 -61.26 -0.34 -10.20 16 17 C 0.11 1.84 5.67 -4.05 -0.02 1.82 16 18 C -0.12 -2.30 5.27 -26.74 -0.14 -2.44 16 19 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 20 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 24 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.06 0.56 8.10 -51.92 -0.42 0.14 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 37 H 0.44 5.54 4.03 -40.96 -0.17 5.38 16 38 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.41 5.29 7.83 -40.82 -0.32 4.97 16 41 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -33.42 392.04 -8.16 -41.58 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.15 Total: 4.58 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.20 Total: 1.82 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.15 Total: -54.47 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.15 Total: -15.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.42 -8.16 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361824378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.640 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds