Wall clock time and date at job start Tue Mar 31 2020 19:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 H 1.08995 * 109.47075 * 304.99778 * 3 2 1 5 5 C 1.52993 * 109.47100 * 64.99867 * 3 2 1 6 6 C 1.50696 * 109.46944 * 185.00024 * 3 2 1 7 7 N 1.31797 * 119.03338 * 120.00161 * 6 3 2 8 8 C 1.32256 * 120.90379 * 179.97438 * 7 6 3 9 9 C 1.39297 * 119.00550 * 359.97438 * 8 7 6 10 10 N 1.39773 * 120.87744 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99820 * 34.50278 * 10 9 8 12 12 O 1.21372 * 120.00429 * 355.53712 * 11 10 9 13 13 C 1.49361 * 119.99762 * 175.53658 * 11 10 9 14 14 O 1.21355 * 119.99850 * 6.19737 * 13 11 10 15 15 N 1.34773 * 119.99599 * 186.20281 * 13 11 10 16 16 C 1.46498 * 120.00173 * 5.15491 * 15 13 11 17 17 C 1.46503 * 119.99776 * 185.15008 * 15 13 11 18 18 H 1.09000 * 109.47065 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47330 * 239.99957 * 17 15 13 20 20 C 1.50696 * 109.46961 * 120.00192 * 17 15 13 21 21 H 1.07997 * 120.00099 * 0.02562 * 20 17 15 22 22 C 1.37882 * 120.00114 * 180.02562 * 20 17 15 23 23 N 1.31510 * 120.00062 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 119.99656 * 0.02562 * 22 20 17 25 25 H 1.48502 * 109.46914 * 269.99565 * 24 22 20 26 26 H 1.48500 * 109.47161 * 29.99792 * 24 22 20 27 27 H 1.48501 * 109.46812 * 150.00050 * 24 22 20 28 28 C 1.39294 * 118.24934 * 0.27644 * 9 8 7 29 29 N 1.31807 * 119.03088 * 299.97774 * 6 3 2 30 30 H 1.08996 * 109.47857 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47327 * 300.00420 * 1 2 3 32 32 H 1.09009 * 109.47118 * 59.99863 * 1 2 3 33 33 H 1.08998 * 109.46935 * 239.99539 * 2 1 3 34 34 H 1.08999 * 109.46598 * 120.00168 * 2 1 3 35 35 H 1.09004 * 109.47418 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47578 * 300.00009 * 5 3 2 37 37 H 1.09004 * 109.47415 * 60.00093 * 5 3 2 38 38 H 1.08001 * 120.50003 * 180.02562 * 8 7 6 39 39 H 0.97004 * 120.00557 * 214.50777 * 10 9 8 40 40 H 1.09006 * 109.46986 * 275.78484 * 16 15 13 41 41 H 1.08996 * 109.47504 * 35.79200 * 16 15 13 42 42 H 1.09002 * 109.47237 * 155.79598 * 16 15 13 43 43 H 1.09009 * 109.47105 * 60.00123 * 19 17 15 44 44 H 1.09002 * 109.47478 * 179.97438 * 19 17 15 45 45 H 1.09000 * 109.47247 * 300.00134 * 19 17 15 46 46 H 0.97000 * 119.99841 * 179.97438 * 23 22 20 47 47 H 1.07992 * 120.49589 * 179.70361 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 7 4.0981 2.0499 -1.1538 8 6 5.4124 2.0744 -1.2988 9 6 6.2092 1.4485 -0.3429 10 7 7.6023 1.4510 -0.4571 11 6 8.2334 2.5197 -0.9826 12 8 7.5889 3.4454 -1.4306 13 6 9.7260 2.5649 -1.0134 14 8 10.3696 1.5950 -0.6700 15 7 10.3580 3.6827 -1.4225 16 6 9.5866 4.8899 -1.7289 17 6 11.8165 3.6907 -1.5606 18 1 12.2123 2.7116 -1.2911 19 6 12.4107 4.7541 -0.6349 20 6 12.1841 4.0052 -2.9878 21 1 11.4089 4.1818 -3.7188 22 6 13.5101 4.0673 -3.3606 23 7 13.8309 4.3412 -4.6062 24 14 14.8509 3.7610 -2.0964 25 1 15.2286 5.0457 -1.4543 26 1 14.3510 2.8191 -1.0629 27 1 16.0390 3.1749 -2.7673 28 6 5.5810 0.8155 0.7271 29 7 4.2607 0.8403 0.8014 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.9990 3.1541 1.3075 36 1 0.5490 2.1253 1.3969 37 1 2.0699 1.5875 2.1492 38 1 5.8613 2.5730 -2.1451 39 1 8.1149 0.6836 -0.1584 40 1 9.2172 4.8348 -2.7529 41 1 8.7436 4.9665 -1.0421 42 1 10.2250 5.7666 -1.6197 43 1 12.1448 4.5266 0.3975 44 1 13.4959 4.7597 -0.7373 45 1 12.0148 5.7331 -0.9048 46 1 14.7638 4.3853 -4.8683 47 1 6.1633 0.3149 1.4863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361909939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:11 Heat of formation + Delta-G solvation = -8.387962 kcal Electronic energy + Delta-G solvation = -28487.781236 eV Core-core repulsion = 24478.682435 eV Total energy + Delta-G solvation = -4009.098801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72782 -40.51174 -38.53664 -36.85709 -36.13059 -35.05178 -33.94019 -32.79637 -31.12166 -30.55824 -29.31821 -26.60744 -26.01991 -25.28589 -25.05435 -24.57706 -23.07671 -21.31263 -20.55334 -19.66048 -18.12059 -17.75654 -17.22658 -17.12354 -16.65866 -16.08247 -15.88131 -15.39628 -15.20613 -15.12312 -14.56160 -14.49830 -14.00626 -13.88505 -13.68082 -13.34133 -13.06897 -12.91486 -12.50879 -12.47968 -12.34067 -12.17999 -12.05941 -11.94378 -11.88330 -11.43121 -11.30164 -11.26451 -11.11842 -11.02762 -10.89872 -10.88129 -10.81411 -10.25291 -9.75404 -9.55175 -9.46560 -9.10387 -8.74882 -8.71618 -8.02233 -6.24521 -4.27345 0.48872 0.83815 1.58886 2.31114 3.15667 3.29202 3.30007 3.31683 3.51383 3.60752 3.71050 3.90683 4.23366 4.24864 4.45526 4.60032 4.62706 4.69522 4.79656 5.07189 5.10336 5.13599 5.21317 5.29289 5.53001 5.55881 5.63622 5.70356 5.73864 5.74754 5.78723 6.01784 6.03760 6.06651 6.07329 6.18350 6.24156 6.27782 6.42720 6.65864 6.68498 6.75740 6.90304 7.02833 7.43287 7.54136 7.86036 7.87607 8.21931 8.39913 8.76901 9.33892 10.87748 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034096 B = 0.002148 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.011377 B =13032.758878 C =13203.902176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.020 4.020 4 H 0.096 0.904 5 C -0.142 4.142 6 C 0.300 3.700 7 N -0.497 5.497 8 C 0.152 3.848 9 C 0.041 3.959 10 N -0.642 5.642 11 C 0.511 3.489 12 O -0.494 6.494 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.544 5.544 16 C 0.083 3.917 17 C 0.227 3.773 18 H 0.067 0.933 19 C -0.163 4.163 20 C -0.533 4.533 21 H 0.082 0.918 22 C 0.078 3.922 23 N -0.889 5.889 24 Si 0.883 3.117 25 H -0.275 1.275 26 H -0.263 1.263 27 H -0.292 1.292 28 C 0.130 3.870 29 N -0.493 5.493 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.184 0.816 39 H 0.427 0.573 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.268 0.732 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.469 -6.050 11.908 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.040 4.040 4 H 0.114 0.886 5 C -0.200 4.200 6 C 0.033 3.967 7 N -0.210 5.210 8 C -0.017 4.017 9 C -0.059 4.059 10 N -0.290 5.290 11 C 0.295 3.705 12 O -0.367 6.367 13 C 0.280 3.720 14 O -0.413 6.413 15 N -0.274 5.274 16 C -0.059 4.059 17 C 0.126 3.874 18 H 0.084 0.916 19 C -0.220 4.220 20 C -0.572 4.572 21 H 0.100 0.900 22 C -0.126 4.126 23 N -0.526 5.526 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.188 1.188 27 H -0.219 1.219 28 C -0.039 4.039 29 N -0.206 5.206 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.201 0.799 39 H 0.266 0.734 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.319 -5.784 11.678 25.845 hybrid contribution 2.234 -0.342 0.456 2.306 sum -20.085 -6.126 12.134 24.252 Atomic orbital electron populations 1.21819 0.95198 1.01843 1.02097 1.21513 0.96022 0.94715 1.02788 1.19987 0.85517 0.98143 1.00398 0.88605 1.21836 1.01610 1.00282 0.96287 1.23153 0.97690 0.89606 0.86268 1.68345 1.11926 1.17562 1.23149 1.23644 0.88009 0.93401 0.96617 1.19622 0.84895 1.03706 0.97682 1.43066 1.03974 1.20239 1.61751 1.20928 0.90286 0.81623 0.77671 1.90726 1.67777 1.35439 1.42785 1.19459 0.86535 0.84861 0.81163 1.90731 1.66630 1.35042 1.48894 1.47889 1.09408 1.10369 1.59767 1.21980 0.95284 0.86908 1.01765 1.19533 0.73906 0.97290 0.96644 0.91575 1.22475 1.00576 1.01015 0.97984 1.21087 0.93758 1.50030 0.92277 0.90038 1.24856 0.98329 0.94081 0.95318 1.69861 1.18468 1.47693 1.16586 0.86927 0.81568 0.78770 0.81521 1.20227 1.18763 1.21944 1.23150 0.90718 0.95943 0.94097 1.68145 1.05997 1.18328 1.28135 0.92557 0.92225 0.92583 0.92159 0.90790 0.92786 0.91432 0.91489 0.79917 0.73414 0.91943 0.90786 0.90758 0.94545 0.92728 0.92142 0.92230 0.81021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.11 -0.85 5.26 -26.73 -0.14 -0.99 16 3 C -0.02 -0.18 2.72 -91.78 -0.25 -0.43 16 4 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 5 C -0.14 -1.08 8.84 37.15 0.33 -0.75 16 6 C 0.30 3.45 6.34 -157.18 -1.00 2.45 16 7 N -0.50 -6.44 10.29 -10.56 -0.11 -6.55 16 8 C 0.15 1.97 9.98 -16.98 -0.17 1.80 16 9 C 0.04 0.47 6.35 -83.45 -0.53 -0.06 16 10 N -0.64 -7.66 5.35 -10.11 -0.05 -7.71 16 11 C 0.51 7.75 7.56 -11.63 -0.09 7.67 16 12 O -0.49 -7.89 10.86 5.48 0.06 -7.83 16 13 C 0.50 9.25 7.72 -11.63 -0.09 9.16 16 14 O -0.53 -10.83 15.83 5.49 0.09 -10.74 16 15 N -0.54 -10.86 2.75 -175.81 -0.48 -11.34 16 16 C 0.08 1.44 8.43 59.85 0.50 1.95 16 17 C 0.23 5.21 2.22 -69.08 -0.15 5.06 16 18 H 0.07 1.64 5.97 -51.93 -0.31 1.33 16 19 C -0.16 -3.32 8.66 37.16 0.32 -3.00 16 20 C -0.53 -14.23 8.95 -34.44 -0.31 -14.54 16 21 H 0.08 2.37 7.89 -52.49 -0.41 1.95 16 22 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 23 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 24 Si 0.88 20.87 24.37 -169.99 -4.14 16.73 16 25 H -0.28 -6.24 6.87 56.52 0.39 -5.85 16 26 H -0.26 -6.05 6.53 56.52 0.37 -5.69 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 C 0.13 1.31 11.26 -16.97 -0.19 1.12 16 29 N -0.49 -5.44 9.87 -10.57 -0.10 -5.54 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 6.57 -51.93 -0.34 -0.04 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 37 H 0.07 0.54 8.01 -51.93 -0.42 0.12 16 38 H 0.18 2.48 6.30 -52.49 -0.33 2.15 16 39 H 0.43 4.33 8.31 -40.82 -0.34 3.99 16 40 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.07 1.15 5.99 -51.93 -0.31 0.84 16 42 H 0.07 1.25 6.44 -51.93 -0.33 0.91 16 43 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.05 1.16 3.28 -51.93 -0.17 0.99 16 45 H 0.06 1.15 6.67 -51.93 -0.35 0.81 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -31.02 376.57 -6.43 -37.45 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.63 Total: 4.16 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.50 Total: 10.96 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.02 Total: -56.41 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.15 Total: -18.57 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.02 -6.43 -37.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.062 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds