Wall clock time and date at job start Tue Mar 31 2020 19:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 H 1.08995 * 109.47075 * 304.99778 * 3 2 1 5 5 C 1.52993 * 109.47100 * 64.99867 * 3 2 1 6 6 C 1.50696 * 109.46944 * 185.00024 * 3 2 1 7 7 N 1.31797 * 119.03338 * 120.00161 * 6 3 2 8 8 C 1.32256 * 120.90379 * 179.97438 * 7 6 3 9 9 C 1.39297 * 119.00550 * 359.97438 * 8 7 6 10 10 N 1.39773 * 120.87744 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99820 * 34.50278 * 10 9 8 12 12 O 1.21372 * 120.00429 * 355.53712 * 11 10 9 13 13 C 1.49361 * 119.99762 * 175.53658 * 11 10 9 14 14 O 1.21355 * 119.99850 * 6.19737 * 13 11 10 15 15 N 1.34773 * 119.99599 * 186.20281 * 13 11 10 16 16 C 1.46498 * 120.00173 * 5.15491 * 15 13 11 17 17 C 1.46503 * 119.99776 * 185.15008 * 15 13 11 18 18 H 1.09000 * 109.47065 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47330 * 239.99957 * 17 15 13 20 20 C 1.50696 * 109.46961 * 120.00192 * 17 15 13 21 21 H 1.07997 * 120.00099 * 0.02562 * 20 17 15 22 22 C 1.37882 * 120.00114 * 180.02562 * 20 17 15 23 23 N 1.31510 * 120.00062 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 119.99656 * 0.02562 * 22 20 17 25 25 H 1.48502 * 109.46914 * 269.99565 * 24 22 20 26 26 H 1.48500 * 109.47161 * 29.99792 * 24 22 20 27 27 H 1.48501 * 109.46812 * 150.00050 * 24 22 20 28 28 C 1.39294 * 118.24934 * 0.27644 * 9 8 7 29 29 N 1.31807 * 119.03088 * 299.97774 * 6 3 2 30 30 H 1.08996 * 109.47857 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47327 * 300.00420 * 1 2 3 32 32 H 1.09009 * 109.47118 * 59.99863 * 1 2 3 33 33 H 1.08998 * 109.46935 * 239.99539 * 2 1 3 34 34 H 1.08999 * 109.46598 * 120.00168 * 2 1 3 35 35 H 1.09004 * 109.47418 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47578 * 300.00009 * 5 3 2 37 37 H 1.09004 * 109.47415 * 60.00093 * 5 3 2 38 38 H 1.08001 * 120.50003 * 180.02562 * 8 7 6 39 39 H 0.97004 * 120.00557 * 214.50777 * 10 9 8 40 40 H 1.09006 * 109.46986 * 275.78484 * 16 15 13 41 41 H 1.08996 * 109.47504 * 35.79200 * 16 15 13 42 42 H 1.09002 * 109.47237 * 155.79598 * 16 15 13 43 43 H 1.09009 * 109.47105 * 60.00123 * 19 17 15 44 44 H 1.09002 * 109.47478 * 179.97438 * 19 17 15 45 45 H 1.09000 * 109.47247 * 300.00134 * 19 17 15 46 46 H 0.97000 * 119.99841 * 179.97438 * 23 22 20 47 47 H 1.07992 * 120.49589 * 179.70361 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 7 4.0981 2.0499 -1.1538 8 6 5.4124 2.0744 -1.2988 9 6 6.2092 1.4485 -0.3429 10 7 7.6023 1.4510 -0.4571 11 6 8.2334 2.5197 -0.9826 12 8 7.5889 3.4454 -1.4306 13 6 9.7260 2.5649 -1.0134 14 8 10.3696 1.5950 -0.6700 15 7 10.3580 3.6827 -1.4225 16 6 9.5866 4.8899 -1.7289 17 6 11.8165 3.6907 -1.5606 18 1 12.2123 2.7116 -1.2911 19 6 12.4107 4.7541 -0.6349 20 6 12.1841 4.0052 -2.9878 21 1 11.4089 4.1818 -3.7188 22 6 13.5101 4.0673 -3.3606 23 7 13.8309 4.3412 -4.6062 24 14 14.8509 3.7610 -2.0964 25 1 15.2286 5.0457 -1.4543 26 1 14.3510 2.8191 -1.0629 27 1 16.0390 3.1749 -2.7673 28 6 5.5810 0.8155 0.7271 29 7 4.2607 0.8403 0.8014 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.9990 3.1541 1.3075 36 1 0.5490 2.1253 1.3969 37 1 2.0699 1.5875 2.1492 38 1 5.8613 2.5730 -2.1451 39 1 8.1149 0.6836 -0.1584 40 1 9.2172 4.8348 -2.7529 41 1 8.7436 4.9665 -1.0421 42 1 10.2250 5.7666 -1.6197 43 1 12.1448 4.5266 0.3975 44 1 13.4959 4.7597 -0.7373 45 1 12.0148 5.7331 -0.9048 46 1 14.7638 4.3853 -4.8683 47 1 6.1633 0.3149 1.4863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361909939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:10 Heat of formation + Delta-G solvation = -29.727023 kcal Electronic energy + Delta-G solvation = -28488.706567 eV Core-core repulsion = 24478.682435 eV Total energy + Delta-G solvation = -4010.024132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73629 -41.73499 -39.91119 -37.89000 -37.42113 -36.16521 -34.87257 -34.70265 -32.37056 -31.90316 -30.04837 -28.01310 -27.27241 -26.95582 -25.99017 -25.62917 -24.03154 -22.63369 -21.38652 -21.00726 -19.43648 -18.85367 -18.81576 -18.22636 -17.89241 -17.62612 -17.20859 -16.93499 -16.14962 -16.03807 -15.76605 -15.44109 -15.29670 -14.92947 -14.84736 -14.74161 -14.32918 -14.14523 -14.00702 -13.67650 -13.55613 -13.46228 -13.09362 -13.05842 -12.85503 -12.70766 -12.57941 -12.47375 -12.27688 -12.07435 -11.95926 -11.92692 -11.66132 -11.55534 -11.50274 -11.41209 -10.82255 -10.66293 -10.29700 -9.75689 -9.58120 -8.36327 -6.43582 -0.48438 -0.06702 0.31952 1.08132 1.28962 1.37578 1.46078 1.96592 2.27006 2.35480 2.59777 2.84458 2.97702 3.05695 3.10537 3.38378 3.73251 3.92969 4.00896 4.08765 4.28563 4.37631 4.39897 4.50529 4.55038 4.59379 4.63391 4.64925 4.71050 4.73778 4.81313 4.94388 4.99689 5.03108 5.11861 5.18031 5.18637 5.20086 5.30859 5.36113 5.47295 5.50904 5.51660 5.69533 5.83258 6.08201 6.35275 6.48914 6.60579 6.81795 6.96780 7.22307 8.79496 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034096 B = 0.002148 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.011377 B =13032.758878 C =13203.902176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.022 4.022 4 H 0.095 0.905 5 C -0.136 4.136 6 C 0.297 3.703 7 N -0.518 5.518 8 C 0.139 3.861 9 C 0.031 3.969 10 N -0.621 5.621 11 C 0.521 3.479 12 O -0.505 6.505 13 C 0.497 3.503 14 O -0.552 6.552 15 N -0.557 5.557 16 C 0.089 3.911 17 C 0.230 3.770 18 H 0.049 0.951 19 C -0.157 4.157 20 C -0.533 4.533 21 H 0.042 0.958 22 C 0.023 3.977 23 N -0.937 5.937 24 Si 0.943 3.057 25 H -0.254 1.254 26 H -0.252 1.252 27 H -0.296 1.296 28 C 0.147 3.853 29 N -0.497 5.497 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.171 0.829 39 H 0.437 0.563 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.270 0.730 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.593 -6.705 14.796 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.043 4.043 4 H 0.113 0.887 5 C -0.194 4.194 6 C 0.030 3.970 7 N -0.231 5.231 8 C -0.028 4.028 9 C -0.068 4.068 10 N -0.270 5.270 11 C 0.303 3.697 12 O -0.379 6.379 13 C 0.279 3.721 14 O -0.432 6.432 15 N -0.287 5.287 16 C -0.052 4.052 17 C 0.128 3.872 18 H 0.067 0.933 19 C -0.215 4.215 20 C -0.571 4.571 21 H 0.061 0.939 22 C -0.176 4.176 23 N -0.576 5.576 24 Si 0.770 3.230 25 H -0.179 1.179 26 H -0.176 1.176 27 H -0.224 1.224 28 C -0.023 4.023 29 N -0.210 5.210 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.188 0.812 39 H 0.278 0.722 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -23.491 -6.451 14.588 28.394 hybrid contribution 2.423 -0.211 -0.489 2.481 sum -21.067 -6.663 14.099 26.211 Atomic orbital electron populations 1.21803 0.93642 1.02499 1.02687 1.21460 0.97302 0.93568 1.02105 1.20135 0.83939 0.99126 1.01068 0.88723 1.21803 1.02944 0.99373 0.95287 1.23715 0.98957 0.88646 0.85705 1.68364 1.11953 1.18686 1.24140 1.23546 0.88497 0.93909 0.96887 1.19595 0.84169 1.04698 0.98342 1.42788 1.04246 1.19465 1.60520 1.20182 0.88581 0.82488 0.78407 1.90734 1.67344 1.36207 1.43602 1.19957 0.88094 0.83946 0.80117 1.90709 1.67631 1.35459 1.49439 1.47883 1.08607 1.11711 1.60525 1.22016 0.95629 0.86110 1.01491 1.19245 0.76098 0.97177 0.94729 0.93327 1.22352 0.99877 1.00454 0.98786 1.21278 0.92946 1.49088 0.93825 0.93938 1.25696 1.00878 0.93905 0.97160 1.70005 1.19101 1.49672 1.18837 0.85944 0.78190 0.79721 0.79194 1.17945 1.17623 1.22355 1.23723 0.90545 0.94232 0.93754 1.68276 1.06348 1.18426 1.27941 0.91903 0.91227 0.92397 0.93257 0.91007 0.93722 0.89329 0.91775 0.81173 0.72180 0.93360 0.88704 0.90378 0.91828 0.93341 0.91146 0.92122 0.77401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.11 -1.44 5.26 30.59 0.16 -1.28 16 3 C -0.02 -0.36 2.72 -11.54 -0.03 -0.40 16 4 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 5 C -0.14 -1.82 8.84 71.98 0.64 -1.19 16 6 C 0.30 6.47 6.34 138.74 0.88 7.35 16 7 N -0.52 -13.23 10.29 -187.34 -1.93 -15.16 16 8 C 0.14 3.56 9.98 84.88 0.85 4.41 16 9 C 0.03 0.67 6.35 38.38 0.24 0.92 16 10 N -0.62 -13.83 5.35 -304.24 -1.63 -15.46 16 11 C 0.52 15.33 7.56 87.24 0.66 15.99 16 12 O -0.50 -15.86 10.86 -3.32 -0.04 -15.89 16 13 C 0.50 18.10 7.72 87.24 0.67 18.77 16 14 O -0.55 -21.96 15.83 -3.26 -0.05 -22.01 16 15 N -0.56 -22.05 2.75 -828.49 -2.28 -24.33 16 16 C 0.09 3.07 8.43 127.77 1.08 4.15 16 17 C 0.23 10.44 2.22 44.24 0.10 10.54 16 18 H 0.05 2.39 5.97 -2.39 -0.01 2.38 16 19 C -0.16 -6.07 8.66 71.98 0.62 -5.44 16 20 C -0.53 -29.09 8.95 25.60 0.23 -28.86 16 21 H 0.04 2.58 7.89 -2.91 -0.02 2.56 16 22 C 0.02 1.28 5.45 84.66 0.46 1.74 16 23 N -0.94 -56.40 13.96 21.45 0.30 -56.10 16 24 Si 0.94 42.73 24.37 68.60 1.67 44.41 16 25 H -0.25 -10.59 6.87 99.48 0.68 -9.90 16 26 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 27 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 28 C 0.15 2.57 11.26 84.88 0.96 3.52 16 29 N -0.50 -9.95 9.87 -187.34 -1.85 -11.80 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.53 6.57 -2.38 -0.02 0.51 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.80 6.57 -2.39 -0.02 0.79 16 37 H 0.06 0.90 8.01 -2.39 -0.02 0.88 16 38 H 0.17 4.72 6.30 -2.91 -0.02 4.70 16 39 H 0.44 7.97 8.31 -92.71 -0.77 7.20 16 40 H 0.05 1.77 8.09 -2.38 -0.02 1.75 16 41 H 0.09 2.85 5.99 -2.39 -0.01 2.84 16 42 H 0.08 2.58 6.44 -2.39 -0.02 2.57 16 43 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 44 H 0.05 1.93 3.28 -2.39 -0.01 1.92 16 45 H 0.07 2.55 6.67 -2.39 -0.02 2.54 16 46 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -68.27 376.57 2.57 -65.70 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.16 Total: 21.16 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 8.21 Total: 29.49 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.39 Total: -122.85 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.09 Total: -37.91 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.41 kcal Total: -68.27 2.57 -65.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.971 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds