Wall clock time and date at job start Tue Mar 31 2020 19:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08995 * 109.47128 * 305.00070 * 3 2 1 5 5 C 1.53002 * 109.47124 * 65.00559 * 3 2 1 6 6 C 1.50704 * 109.46607 * 184.99920 * 3 2 1 7 7 N 1.31808 * 119.02727 * 120.00096 * 6 3 2 8 8 C 1.32258 * 120.89518 * 179.97438 * 7 6 3 9 9 C 1.39286 * 119.01029 * 0.02562 * 8 7 6 10 10 N 1.39776 * 120.87729 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00412 * 146.48850 * 10 9 8 12 12 O 1.21378 * 119.99968 * 3.98001 * 11 10 9 13 13 C 1.49355 * 120.00290 * 183.98950 * 11 10 9 14 14 O 1.21353 * 120.00005 * 355.59405 * 13 11 10 15 15 N 1.34776 * 119.99893 * 175.87204 * 13 11 10 16 16 C 1.46493 * 120.00366 * 0.60779 * 15 13 11 17 17 C 1.46502 * 119.99706 * 180.60730 * 15 13 11 18 18 H 1.09003 * 109.47128 * 0.02562 * 17 15 13 19 19 C 1.53003 * 109.47020 * 119.99912 * 17 15 13 20 20 C 1.50697 * 109.46992 * 239.99836 * 17 15 13 21 21 H 1.07995 * 120.00242 * 0.02562 * 20 17 15 22 22 C 1.37885 * 120.00068 * 179.97438 * 20 17 15 23 23 N 1.31509 * 120.00002 * 180.02562 * 22 20 17 24 24 Si 1.86804 * 119.99630 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.46954 * 90.00072 * 24 22 20 26 26 H 1.48500 * 109.46907 * 209.99517 * 24 22 20 27 27 H 1.48494 * 109.47286 * 329.99925 * 24 22 20 28 28 C 1.39295 * 118.24762 * 0.24782 * 9 8 7 29 29 N 1.31801 * 119.03513 * 299.98037 * 6 3 2 30 30 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47008 * 299.99985 * 1 2 3 32 32 H 1.08999 * 109.47092 * 59.99786 * 1 2 3 33 33 H 1.08993 * 109.47083 * 240.00329 * 2 1 3 34 34 H 1.08995 * 109.47274 * 119.99756 * 2 1 3 35 35 H 1.09006 * 109.46876 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46701 * 299.99484 * 5 3 2 37 37 H 1.08995 * 109.47517 * 59.99750 * 5 3 2 38 38 H 1.07997 * 120.49148 * 180.02562 * 8 7 6 39 39 H 0.96999 * 119.99828 * 326.48796 * 10 9 8 40 40 H 1.09001 * 109.47288 * 83.67911 * 16 15 13 41 41 H 1.09001 * 109.47714 * 203.67844 * 16 15 13 42 42 H 1.09005 * 109.47244 * 323.68296 * 16 15 13 43 43 H 1.09003 * 109.46899 * 60.00192 * 19 17 15 44 44 H 1.08997 * 109.47312 * 179.97438 * 19 17 15 45 45 H 1.08994 * 109.47211 * 299.99933 * 19 17 15 46 46 H 0.97003 * 119.99795 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.49543 * 179.74716 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5418 1.4444 -0.1238 7 7 4.0979 2.0502 -1.1539 8 6 5.4123 2.0748 -1.2988 9 6 6.2091 1.4481 -0.3436 10 7 7.6021 1.4498 -0.4585 11 6 8.3696 1.4882 0.6487 12 8 7.8535 1.4484 1.7466 13 6 9.8552 1.5800 0.5249 14 8 10.3764 1.5393 -0.5703 15 7 10.6172 1.7022 1.6298 16 6 9.9895 1.7317 2.9530 17 6 12.0735 1.8056 1.5074 18 1 12.3533 1.7660 0.4547 19 6 12.5430 3.1314 2.1098 20 6 12.7219 0.6617 2.2436 21 1 12.1105 -0.0694 2.7515 22 6 14.0958 0.5479 2.2680 23 7 14.6616 -0.4506 2.9100 24 14 15.1533 1.8122 1.3889 25 1 15.4770 2.9214 2.3217 26 1 16.4106 1.1709 0.9273 27 1 14.4131 2.3494 0.2190 28 6 5.5808 0.8147 0.7261 29 7 4.2607 0.8406 0.8013 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1542 1.3076 36 1 0.5488 2.1252 1.3970 37 1 2.0699 1.5876 2.1492 38 1 5.8611 2.5734 -2.1452 39 1 8.0165 1.4233 -1.3351 40 1 9.8091 0.7117 3.2925 41 1 10.6499 2.2375 3.6574 42 1 9.0422 2.2678 2.8940 43 1 12.2631 3.1715 3.1625 44 1 13.6265 3.2082 2.0192 45 1 12.0740 3.9587 1.5773 46 1 15.6282 -0.5308 2.9268 47 1 6.1633 0.3140 1.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361909940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:15 Heat of formation + Delta-G solvation = -6.007390 kcal Electronic energy + Delta-G solvation = -28531.820747 eV Core-core repulsion = 24522.825175 eV Total energy + Delta-G solvation = -4008.995572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73843 -40.52556 -38.53405 -36.87217 -36.13274 -35.04119 -33.94979 -32.79022 -31.12230 -30.55329 -29.31930 -26.60079 -26.00015 -25.27834 -25.07843 -24.57031 -23.11066 -21.17254 -20.69614 -19.65912 -18.14187 -17.75649 -17.22926 -17.00529 -16.72319 -16.11097 -15.88859 -15.40460 -15.19780 -15.13411 -14.60150 -14.47710 -13.99628 -13.92447 -13.56184 -13.39721 -13.07324 -12.92625 -12.52188 -12.46821 -12.34746 -12.21842 -12.06233 -11.93946 -11.87316 -11.46661 -11.30818 -11.24814 -11.06723 -10.99036 -10.91156 -10.83000 -10.81126 -10.25400 -9.74585 -9.55100 -9.46537 -9.06714 -8.74773 -8.71811 -8.01522 -6.24247 -4.26856 0.47997 0.83400 1.58388 2.29869 3.15722 3.29179 3.30030 3.31713 3.51579 3.59377 3.70634 3.92303 4.23143 4.25079 4.45153 4.60091 4.65629 4.71847 4.72470 5.07446 5.09124 5.18367 5.22253 5.30767 5.51489 5.56364 5.63307 5.70702 5.75729 5.77248 5.80946 6.03141 6.05825 6.06872 6.09636 6.17783 6.24029 6.29430 6.43326 6.65545 6.68710 6.75419 6.90195 7.02603 7.43988 7.54535 7.85779 7.87530 8.22241 8.40622 8.77066 9.34239 10.88079 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.002194 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.356049 B =12760.609088 C =13018.849511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.019 4.019 4 H 0.094 0.906 5 C -0.143 4.143 6 C 0.300 3.700 7 N -0.499 5.499 8 C 0.129 3.871 9 C 0.041 3.959 10 N -0.641 5.641 11 C 0.512 3.488 12 O -0.495 6.495 13 C 0.498 3.502 14 O -0.534 6.534 15 N -0.543 5.543 16 C 0.074 3.926 17 C 0.227 3.773 18 H 0.067 0.933 19 C -0.163 4.163 20 C -0.532 4.532 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.890 5.890 24 Si 0.883 3.117 25 H -0.276 1.276 26 H -0.292 1.292 27 H -0.263 1.263 28 C 0.152 3.848 29 N -0.491 5.491 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.173 0.827 39 H 0.427 0.573 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.268 0.732 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.599 5.330 -6.047 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.039 4.039 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.032 3.968 7 N -0.212 5.212 8 C -0.040 4.040 9 C -0.059 4.059 10 N -0.289 5.289 11 C 0.296 3.704 12 O -0.369 6.369 13 C 0.278 3.722 14 O -0.412 6.412 15 N -0.273 5.273 16 C -0.068 4.068 17 C 0.126 3.874 18 H 0.084 0.916 19 C -0.221 4.221 20 C -0.570 4.570 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.526 5.526 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.188 1.188 28 C -0.017 4.017 29 N -0.204 5.204 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.190 0.810 39 H 0.266 0.734 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -24.387 5.207 -5.636 25.566 hybrid contribution 2.106 0.577 -0.834 2.338 sum -22.281 5.784 -6.470 23.911 Atomic orbital electron populations 1.21816 0.95201 1.01870 1.02034 1.21519 0.96001 0.94706 1.02899 1.19982 0.85473 0.98164 1.00324 0.88735 1.21846 1.01599 1.00254 0.96390 1.23166 0.97749 0.90192 0.85650 1.68237 1.11377 1.18336 1.23209 1.23138 0.88855 0.93720 0.98245 1.19627 0.84790 1.01048 1.00445 1.43077 1.02949 1.71541 1.11351 1.20954 0.89424 0.76128 0.83874 1.90685 1.74884 1.45804 1.25482 1.19440 0.86009 0.80881 0.85835 1.90735 1.73501 1.51091 1.25919 1.47897 1.08576 1.65218 1.05592 1.22157 0.98231 1.02832 0.83618 1.19536 0.74116 0.94316 0.99481 0.91568 1.22482 1.00449 0.97680 1.01469 1.21075 0.92152 1.09523 1.34279 0.90067 1.24859 0.97623 0.95521 0.94606 1.69862 1.10931 1.30312 1.41542 0.86922 0.79998 0.81141 0.80691 1.20241 1.21945 1.18791 1.23663 0.89940 0.92093 0.96022 1.68257 1.06443 1.18183 1.27512 0.92529 0.92203 0.92662 0.92192 0.90653 0.92839 0.91431 0.91324 0.81030 0.73399 0.92196 0.90817 0.89649 0.92122 0.92713 0.94578 0.92239 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.11 -0.89 5.26 -26.73 -0.14 -1.03 16 3 C -0.02 -0.17 2.72 -91.77 -0.25 -0.42 16 4 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 5 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 6 C 0.30 3.42 6.34 -157.18 -1.00 2.43 16 7 N -0.50 -5.69 10.29 -10.56 -0.11 -5.80 16 8 C 0.13 1.32 11.26 -16.98 -0.19 1.13 16 9 C 0.04 0.47 6.36 -83.45 -0.53 -0.06 16 10 N -0.64 -7.60 5.35 -10.11 -0.05 -7.65 16 11 C 0.51 7.68 7.63 -11.63 -0.09 7.59 16 12 O -0.50 -7.73 10.62 5.47 0.06 -7.67 16 13 C 0.50 9.21 7.74 -11.63 -0.09 9.12 16 14 O -0.53 -10.86 15.81 5.49 0.09 -10.78 16 15 N -0.54 -10.82 2.75 -175.81 -0.48 -11.31 16 16 C 0.07 1.28 8.64 59.84 0.52 1.80 16 17 C 0.23 5.20 2.22 -69.08 -0.15 5.05 16 18 H 0.07 1.65 5.96 -51.93 -0.31 1.34 16 19 C -0.16 -3.32 8.66 37.16 0.32 -3.00 16 20 C -0.53 -14.22 8.95 -34.44 -0.31 -14.53 16 21 H 0.08 2.36 7.89 -52.49 -0.41 1.95 16 22 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 23 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 24 Si 0.88 20.90 24.37 -169.99 -4.14 16.76 16 25 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 28 C 0.15 1.92 9.98 -16.98 -0.17 1.75 16 29 N -0.49 -6.10 9.87 -10.56 -0.10 -6.21 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.41 6.56 -51.93 -0.34 0.06 16 37 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.43 4.33 8.30 -40.82 -0.34 4.00 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.24 6.45 -51.93 -0.33 0.91 16 42 H 0.09 1.34 5.53 -51.93 -0.29 1.05 16 43 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 44 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.18 2.41 6.26 -52.49 -0.33 2.08 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -31.00 376.16 -6.40 -37.40 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.61 Total: 4.36 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -1.49 Total: 10.52 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.02 Total: -56.26 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.15 Total: -18.44 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.00 -6.40 -37.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.393 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds