Wall clock time and date at job start Tue Mar 31 2020 19:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08995 * 109.47128 * 305.00070 * 3 2 1 5 5 C 1.53002 * 109.47124 * 65.00559 * 3 2 1 6 6 C 1.50704 * 109.46607 * 184.99920 * 3 2 1 7 7 N 1.31808 * 119.02727 * 120.00096 * 6 3 2 8 8 C 1.32258 * 120.89518 * 179.97438 * 7 6 3 9 9 C 1.39286 * 119.01029 * 0.02562 * 8 7 6 10 10 N 1.39776 * 120.87729 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00412 * 146.48850 * 10 9 8 12 12 O 1.21378 * 119.99968 * 3.98001 * 11 10 9 13 13 C 1.49355 * 120.00290 * 183.98950 * 11 10 9 14 14 O 1.21353 * 120.00005 * 355.59405 * 13 11 10 15 15 N 1.34776 * 119.99893 * 175.87204 * 13 11 10 16 16 C 1.46493 * 120.00366 * 0.60779 * 15 13 11 17 17 C 1.46502 * 119.99706 * 180.60730 * 15 13 11 18 18 H 1.09003 * 109.47128 * 0.02562 * 17 15 13 19 19 C 1.53003 * 109.47020 * 119.99912 * 17 15 13 20 20 C 1.50697 * 109.46992 * 239.99836 * 17 15 13 21 21 H 1.07995 * 120.00242 * 0.02562 * 20 17 15 22 22 C 1.37885 * 120.00068 * 179.97438 * 20 17 15 23 23 N 1.31509 * 120.00002 * 180.02562 * 22 20 17 24 24 Si 1.86804 * 119.99630 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.46954 * 90.00072 * 24 22 20 26 26 H 1.48500 * 109.46907 * 209.99517 * 24 22 20 27 27 H 1.48494 * 109.47286 * 329.99925 * 24 22 20 28 28 C 1.39295 * 118.24762 * 0.24782 * 9 8 7 29 29 N 1.31801 * 119.03513 * 299.98037 * 6 3 2 30 30 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47008 * 299.99985 * 1 2 3 32 32 H 1.08999 * 109.47092 * 59.99786 * 1 2 3 33 33 H 1.08993 * 109.47083 * 240.00329 * 2 1 3 34 34 H 1.08995 * 109.47274 * 119.99756 * 2 1 3 35 35 H 1.09006 * 109.46876 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46701 * 299.99484 * 5 3 2 37 37 H 1.08995 * 109.47517 * 59.99750 * 5 3 2 38 38 H 1.07997 * 120.49148 * 180.02562 * 8 7 6 39 39 H 0.96999 * 119.99828 * 326.48796 * 10 9 8 40 40 H 1.09001 * 109.47288 * 83.67911 * 16 15 13 41 41 H 1.09001 * 109.47714 * 203.67844 * 16 15 13 42 42 H 1.09005 * 109.47244 * 323.68296 * 16 15 13 43 43 H 1.09003 * 109.46899 * 60.00192 * 19 17 15 44 44 H 1.08997 * 109.47312 * 179.97438 * 19 17 15 45 45 H 1.08994 * 109.47211 * 299.99933 * 19 17 15 46 46 H 0.97003 * 119.99795 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.49543 * 179.74716 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5418 1.4444 -0.1238 7 7 4.0979 2.0502 -1.1539 8 6 5.4123 2.0748 -1.2988 9 6 6.2091 1.4481 -0.3436 10 7 7.6021 1.4498 -0.4585 11 6 8.3696 1.4882 0.6487 12 8 7.8535 1.4484 1.7466 13 6 9.8552 1.5800 0.5249 14 8 10.3764 1.5393 -0.5703 15 7 10.6172 1.7022 1.6298 16 6 9.9895 1.7317 2.9530 17 6 12.0735 1.8056 1.5074 18 1 12.3533 1.7660 0.4547 19 6 12.5430 3.1314 2.1098 20 6 12.7219 0.6617 2.2436 21 1 12.1105 -0.0694 2.7515 22 6 14.0958 0.5479 2.2680 23 7 14.6616 -0.4506 2.9100 24 14 15.1533 1.8122 1.3889 25 1 15.4770 2.9214 2.3217 26 1 16.4106 1.1709 0.9273 27 1 14.4131 2.3494 0.2190 28 6 5.5808 0.8147 0.7261 29 7 4.2607 0.8406 0.8013 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1542 1.3076 36 1 0.5488 2.1252 1.3970 37 1 2.0699 1.5876 2.1492 38 1 5.8611 2.5734 -2.1452 39 1 8.0165 1.4233 -1.3351 40 1 9.8091 0.7117 3.2925 41 1 10.6499 2.2375 3.6574 42 1 9.0422 2.2678 2.8940 43 1 12.2631 3.1715 3.1625 44 1 13.6265 3.2082 2.0192 45 1 12.0740 3.9587 1.5773 46 1 15.6282 -0.5308 2.9268 47 1 6.1633 0.3140 1.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361909940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:14 Heat of formation + Delta-G solvation = -27.291154 kcal Electronic energy + Delta-G solvation = -28532.743681 eV Core-core repulsion = 24522.825175 eV Total energy + Delta-G solvation = -4009.918505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.74078 -41.73857 -39.90669 -37.90434 -37.42179 -36.15478 -34.86269 -34.70861 -32.36286 -31.90868 -30.05690 -28.00311 -27.27886 -26.93366 -25.98778 -25.64288 -24.07741 -22.55189 -21.43404 -21.02481 -19.42502 -18.87561 -18.84124 -18.14151 -17.90644 -17.59950 -17.23247 -16.95100 -16.13346 -16.08642 -15.77444 -15.38733 -15.23776 -15.01088 -14.85330 -14.77624 -14.31018 -14.14077 -14.01150 -13.68728 -13.58259 -13.50076 -13.10019 -13.06595 -12.85138 -12.67282 -12.54031 -12.46297 -12.27979 -12.07625 -11.95326 -11.93147 -11.62826 -11.55115 -11.52805 -11.41210 -10.82330 -10.61494 -10.28603 -9.75461 -9.56862 -8.36309 -6.43344 -0.48706 -0.06262 0.32627 1.07362 1.28764 1.37386 1.45851 1.97179 2.26989 2.36256 2.60252 2.84722 2.97814 3.06302 3.10459 3.38245 3.73309 3.92981 3.99950 4.08312 4.29248 4.36770 4.40150 4.50595 4.54383 4.61102 4.63134 4.67356 4.68777 4.74717 4.81744 4.94947 4.99254 5.04126 5.10865 5.18186 5.18967 5.20611 5.31111 5.36542 5.47253 5.51160 5.51502 5.69694 5.83453 6.08311 6.35857 6.49241 6.60544 6.82566 6.97208 7.22411 8.79561 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.002194 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.356049 B =12760.609088 C =13018.849511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.020 4.020 4 H 0.104 0.896 5 C -0.138 4.138 6 C 0.296 3.704 7 N -0.508 5.508 8 C 0.145 3.855 9 C 0.031 3.969 10 N -0.621 5.621 11 C 0.523 3.477 12 O -0.503 6.503 13 C 0.496 3.504 14 O -0.554 6.554 15 N -0.556 5.556 16 C 0.080 3.920 17 C 0.229 3.771 18 H 0.049 0.951 19 C -0.157 4.157 20 C -0.532 4.532 21 H 0.042 0.958 22 C 0.022 3.978 23 N -0.938 5.938 24 Si 0.944 3.056 25 H -0.254 1.254 26 H -0.296 1.296 27 H -0.252 1.252 28 C 0.140 3.860 29 N -0.505 5.505 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.208 0.792 39 H 0.437 0.563 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.270 0.730 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.295 7.502 -7.423 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.040 4.040 4 H 0.123 0.877 5 C -0.196 4.196 6 C 0.029 3.971 7 N -0.221 5.221 8 C -0.024 4.024 9 C -0.068 4.068 10 N -0.270 5.270 11 C 0.305 3.695 12 O -0.378 6.378 13 C 0.277 3.723 14 O -0.434 6.434 15 N -0.286 5.286 16 C -0.061 4.061 17 C 0.127 3.873 18 H 0.067 0.933 19 C -0.215 4.215 20 C -0.570 4.570 21 H 0.060 0.940 22 C -0.177 4.177 23 N -0.577 5.577 24 Si 0.770 3.230 25 H -0.180 1.180 26 H -0.224 1.224 27 H -0.176 1.176 28 C -0.028 4.028 29 N -0.219 5.219 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.224 0.776 39 H 0.278 0.722 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -26.135 7.387 -7.023 28.052 hybrid contribution 2.484 -0.194 -0.438 2.529 sum -23.652 7.193 -7.461 25.823 Atomic orbital electron populations 1.21795 0.93470 1.02448 1.02809 1.21470 0.97438 0.93887 1.01890 1.20130 0.83906 0.98875 1.01096 0.87748 1.21816 1.02943 0.99474 0.95361 1.23733 0.98924 0.89262 0.85223 1.68365 1.11822 1.18686 1.23210 1.23680 0.88331 0.92209 0.98224 1.19598 0.84217 1.02080 1.00917 1.42798 1.03022 1.70308 1.10827 1.20158 0.87846 0.76859 0.84596 1.90688 1.74435 1.46685 1.25954 1.19957 0.87581 0.79671 0.85047 1.90713 1.74480 1.51601 1.26576 1.47896 1.07735 1.65980 1.06974 1.22204 0.98966 1.02424 0.82551 1.19249 0.75979 0.94287 0.97832 0.93336 1.22357 1.00096 0.96749 1.02290 1.21270 0.92124 1.09992 1.33649 0.93961 1.25702 0.99093 0.97508 0.95385 1.70005 1.11372 1.32613 1.43660 0.85940 0.77822 0.79094 0.80166 1.17952 1.22355 1.17640 1.23599 0.90299 0.92504 0.96382 1.68282 1.06386 1.18958 1.28275 0.92114 0.91431 0.91840 0.92974 0.91900 0.93384 0.89216 0.92638 0.77571 0.72224 0.93449 0.90546 0.87628 0.91158 0.93331 0.91822 0.92132 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.11 -1.58 5.26 30.60 0.16 -1.41 16 3 C -0.02 -0.32 2.72 -11.54 -0.03 -0.35 16 4 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 5 C -0.14 -1.98 8.84 71.98 0.64 -1.34 16 6 C 0.30 6.37 6.34 138.75 0.88 7.25 16 7 N -0.51 -10.52 10.29 -187.34 -1.93 -12.45 16 8 C 0.14 2.58 11.26 84.88 0.96 3.53 16 9 C 0.03 0.67 6.36 38.38 0.24 0.91 16 10 N -0.62 -13.72 5.35 -304.25 -1.63 -15.35 16 11 C 0.52 15.15 7.63 87.24 0.67 15.81 16 12 O -0.50 -15.33 10.62 -3.34 -0.04 -15.37 16 13 C 0.50 18.01 7.74 87.24 0.68 18.69 16 14 O -0.55 -22.17 15.81 -3.26 -0.05 -22.22 16 15 N -0.56 -21.98 2.75 -828.50 -2.28 -24.26 16 16 C 0.08 2.75 8.64 127.77 1.10 3.85 16 17 C 0.23 10.41 2.22 44.24 0.10 10.51 16 18 H 0.05 2.39 5.96 -2.39 -0.01 2.38 16 19 C -0.16 -6.08 8.66 71.98 0.62 -5.46 16 20 C -0.53 -29.08 8.95 25.60 0.23 -28.85 16 21 H 0.04 2.57 7.89 -2.91 -0.02 2.55 16 22 C 0.02 1.25 5.45 84.66 0.46 1.71 16 23 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 24 Si 0.94 42.81 24.37 68.60 1.67 44.48 16 25 H -0.25 -10.60 6.87 99.48 0.68 -9.92 16 26 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.25 -10.91 6.53 99.48 0.65 -10.26 16 28 C 0.14 3.47 9.98 84.88 0.85 4.32 16 29 N -0.51 -12.30 9.87 -187.33 -1.85 -14.15 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.57 6.57 -2.38 -0.02 0.55 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 35 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.09 0.87 6.56 -2.38 -0.02 0.85 16 37 H 0.05 0.95 8.01 -2.39 -0.02 0.93 16 38 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.44 8.00 8.30 -92.71 -0.77 7.23 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.54 6.45 -2.39 -0.02 2.52 16 42 H 0.11 3.19 5.53 -2.38 -0.01 3.18 16 43 H 0.07 2.55 6.67 -2.39 -0.02 2.54 16 44 H 0.05 1.94 3.27 -2.39 -0.01 1.93 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.17 4.59 6.26 -2.91 -0.02 4.58 16 Total: -1.00 -68.10 376.16 2.61 -65.49 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.16 Total: 21.61 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 8.25 Total: 28.40 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.39 Total: -122.39 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.67 Total: 44.48 kcal Total: -68.10 2.61 -65.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.203 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds