Wall clock time and date at job start Tue Mar 31 2020 19:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46974 * 2 1 4 4 H 1.08998 * 109.46533 * 304.99672 * 3 2 1 5 5 C 1.53001 * 109.46854 * 64.99733 * 3 2 1 6 6 C 1.50694 * 109.47026 * 185.00085 * 3 2 1 7 7 N 1.31803 * 119.03131 * 119.99826 * 6 3 2 8 8 C 1.32262 * 120.89587 * 179.97438 * 7 6 3 9 9 C 1.39285 * 119.00877 * 0.02562 * 8 7 6 10 10 N 1.39781 * 120.87420 * 180.02562 * 9 8 7 11 11 C 1.34786 * 119.99572 * 144.61464 * 10 9 8 12 12 O 1.21367 * 120.00382 * 4.27047 * 11 10 9 13 13 C 1.49354 * 119.99404 * 184.27458 * 11 10 9 14 14 O 1.21367 * 120.00214 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99941 * 179.97438 * 13 11 10 16 16 C 1.46503 * 120.00064 * 179.97438 * 15 13 11 17 17 H 1.09002 * 109.46992 * 325.00457 * 16 15 13 18 18 C 1.50700 * 109.47225 * 205.00026 * 16 15 13 19 19 H 1.08005 * 119.99713 * 354.26735 * 18 16 15 20 20 C 1.37870 * 120.00076 * 174.26323 * 18 16 15 21 21 N 1.31521 * 120.00122 * 155.57828 * 20 18 16 22 22 Si 1.86797 * 120.00167 * 335.58085 * 20 18 16 23 23 H 1.48505 * 109.47504 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.47035 * 299.99599 * 22 20 18 25 25 H 1.48498 * 109.47355 * 59.99566 * 22 20 18 26 26 C 1.52999 * 109.46584 * 85.00346 * 16 15 13 27 27 C 1.52995 * 109.47099 * 296.24162 * 26 16 15 28 28 C 1.39297 * 118.25171 * 0.27026 * 9 8 7 29 29 N 1.31808 * 119.03120 * 299.97534 * 6 3 2 30 30 H 1.08994 * 109.47179 * 299.99870 * 1 2 3 31 31 H 1.09005 * 109.47084 * 60.00408 * 1 2 3 32 32 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47179 * 240.00130 * 2 1 3 34 34 H 1.08995 * 109.46972 * 119.99496 * 2 1 3 35 35 H 1.09002 * 109.46636 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47030 * 299.99979 * 5 3 2 37 37 H 1.08997 * 109.47117 * 60.00387 * 5 3 2 38 38 H 1.07999 * 120.49480 * 180.02562 * 8 7 6 39 39 H 0.96989 * 120.00072 * 324.61646 * 10 9 8 40 40 H 0.97001 * 119.99855 * 0.02562 * 15 13 11 41 41 H 0.96995 * 119.99813 * 354.95998 * 21 20 18 42 42 H 1.08996 * 109.47512 * 56.24803 * 26 16 15 43 43 H 1.09005 * 109.46775 * 176.24731 * 26 16 15 44 44 H 1.08996 * 109.47072 * 60.00695 * 27 26 16 45 45 H 1.09003 * 109.47088 * 180.02562 * 27 26 16 46 46 H 1.09000 * 109.47457 * 300.00156 * 27 26 16 47 47 H 1.07995 * 120.49751 * 179.73192 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5418 1.4444 -0.1238 7 7 4.0980 2.0501 -1.1539 8 6 5.4124 2.0747 -1.2988 9 6 6.2091 1.4480 -0.3435 10 7 7.6022 1.4506 -0.4578 11 6 8.3689 1.5271 0.6481 12 8 7.8527 1.5155 1.7464 13 6 9.8538 1.6262 0.5218 14 8 10.3700 1.6373 -0.5766 15 7 10.6205 1.7032 1.6275 16 6 12.0771 1.7998 1.5037 17 1 12.4087 1.2124 0.6474 18 6 12.7241 1.2699 2.7573 19 1 12.1133 0.9848 3.6012 20 6 14.0957 1.1491 2.8270 21 7 14.6984 1.1611 3.9959 22 14 15.0982 0.9683 1.2612 23 1 16.5385 0.8575 1.6055 24 1 14.6668 -0.2536 0.5356 25 1 14.8863 2.1576 0.3976 26 6 12.4758 3.2633 1.3034 27 6 11.8958 3.7738 -0.0171 28 6 5.5808 0.8142 0.7260 29 7 4.2607 0.8406 0.8014 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.9981 3.1544 1.3071 36 1 0.5488 2.1252 1.3968 37 1 2.0698 1.5876 2.1491 38 1 5.8612 2.5733 -2.1452 39 1 8.0171 1.3974 -1.3329 40 1 10.2080 1.6939 2.5054 41 1 14.1875 1.3280 4.8033 42 1 12.0865 3.8619 2.1268 43 1 13.5626 3.3435 1.2779 44 1 10.8091 3.6936 0.0083 45 1 12.1802 4.8163 -0.1600 46 1 12.2852 3.1751 -0.8406 47 1 6.1632 0.3134 1.4851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361926759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:31 Heat of formation + Delta-G solvation = -36.088897 kcal Electronic energy + Delta-G solvation = -28326.937088 eV Core-core repulsion = 24316.637084 eV Total energy + Delta-G solvation = -4010.300004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75112 -40.47328 -38.66073 -36.85515 -35.80679 -35.07867 -33.98453 -32.58756 -31.57468 -31.13926 -29.35582 -27.63353 -26.02775 -25.10890 -24.57550 -23.08466 -22.40558 -20.80031 -20.71050 -19.80229 -19.18532 -17.81407 -17.75796 -17.10906 -17.00112 -16.21815 -15.76846 -15.44294 -15.19414 -15.11143 -14.55066 -14.25066 -13.99966 -13.95693 -13.61133 -13.49336 -12.95702 -12.81341 -12.59562 -12.49847 -12.44026 -12.16813 -11.94008 -11.87014 -11.64709 -11.46901 -11.22910 -11.07048 -10.98334 -10.95340 -10.93336 -10.84742 -10.56595 -9.99694 -9.89942 -9.61496 -9.34388 -9.27249 -8.77318 -8.43016 -8.38576 -6.71114 -4.32354 0.44586 0.80008 1.53762 2.28443 3.29997 3.32110 3.37710 3.48250 3.52419 3.58154 3.76017 3.88838 4.21377 4.34739 4.56674 4.62835 4.64341 4.69714 4.80159 4.98729 5.07113 5.16490 5.20378 5.29085 5.48160 5.54967 5.62508 5.69129 5.74832 5.76244 5.89845 5.93990 6.02072 6.05432 6.09059 6.20836 6.47149 6.59172 6.66737 6.70467 6.73634 6.82648 7.05395 7.19426 7.40872 7.54865 7.82710 8.09232 8.17147 8.36883 8.68722 9.33665 10.67644 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027783 B = 0.002167 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.550582 B =12915.131243 C =13319.720841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.019 4.019 4 H 0.095 0.905 5 C -0.143 4.143 6 C 0.302 3.698 7 N -0.499 5.499 8 C 0.132 3.868 9 C 0.039 3.961 10 N -0.641 5.641 11 C 0.510 3.490 12 O -0.502 6.502 13 C 0.497 3.503 14 O -0.529 6.529 15 N -0.658 5.658 16 C 0.248 3.752 17 H 0.047 0.953 18 C -0.632 4.632 19 H 0.066 0.934 20 C 0.049 3.951 21 N -0.883 5.883 22 Si 1.030 2.970 23 H -0.281 1.281 24 H -0.280 1.280 25 H -0.272 1.272 26 C -0.135 4.135 27 C -0.145 4.145 28 C 0.153 3.847 29 N -0.491 5.491 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.173 0.827 39 H 0.427 0.573 40 H 0.407 0.593 41 H 0.273 0.727 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.054 0.946 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.054 1.001 -10.172 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.040 4.040 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.034 3.966 7 N -0.212 5.212 8 C -0.037 4.037 9 C -0.061 4.061 10 N -0.290 5.290 11 C 0.293 3.707 12 O -0.375 6.375 13 C 0.275 3.725 14 O -0.407 6.407 15 N -0.307 5.307 16 C 0.146 3.854 17 H 0.064 0.936 18 C -0.669 4.669 19 H 0.084 0.916 20 C -0.160 4.160 21 N -0.514 5.514 22 Si 0.857 3.143 23 H -0.207 1.207 24 H -0.206 1.206 25 H -0.198 1.198 26 C -0.174 4.174 27 C -0.203 4.203 28 C -0.015 4.015 29 N -0.204 5.204 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.190 0.810 39 H 0.266 0.734 40 H 0.242 0.758 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.368 0.783 -10.565 24.750 hybrid contribution -0.446 0.291 0.496 0.728 sum -22.814 1.074 -10.069 24.961 Atomic orbital electron populations 1.21817 0.95170 1.01879 1.02059 1.21520 0.96032 0.94683 1.02878 1.19989 0.85423 0.98191 1.00370 0.88686 1.21848 1.01633 1.00277 0.96361 1.23181 0.97774 0.90037 0.85578 1.68245 1.11385 1.18300 1.23239 1.23166 0.88851 0.93479 0.98234 1.19611 0.84837 1.01162 1.00485 1.43038 1.02942 1.71478 1.11542 1.21066 0.89555 0.76103 0.84015 1.90752 1.74722 1.46031 1.25946 1.19512 0.85950 0.80535 0.86480 1.90753 1.73733 1.50375 1.25867 1.46247 1.09339 1.67321 1.07744 1.19270 0.73897 0.93086 0.99173 0.93571 1.21967 0.94136 1.50961 0.99798 0.91596 1.25634 0.95097 0.92499 1.02752 1.70860 1.38853 1.42308 0.99344 0.84222 0.76674 0.77933 0.75475 1.20684 1.20555 1.19804 1.22283 1.01108 0.98249 0.95736 1.21906 1.00351 0.99106 0.98893 1.23595 0.89984 0.92050 0.95904 1.68254 1.06411 1.18292 1.27488 0.92190 0.92641 0.92522 0.92192 0.90668 0.92812 0.91394 0.91328 0.80974 0.73367 0.75812 0.91692 0.92719 0.91227 0.93850 0.94653 0.92654 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.11 -0.88 5.26 -26.73 -0.14 -1.02 16 3 C -0.02 -0.17 2.72 -91.77 -0.25 -0.42 16 4 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 5 C -0.14 -1.15 8.84 37.16 0.33 -0.82 16 6 C 0.30 3.45 6.34 -157.18 -1.00 2.46 16 7 N -0.50 -5.69 10.29 -10.57 -0.11 -5.80 16 8 C 0.13 1.34 11.26 -16.98 -0.19 1.15 16 9 C 0.04 0.44 6.33 -83.45 -0.53 -0.08 16 10 N -0.64 -7.40 5.35 -10.11 -0.05 -7.45 16 11 C 0.51 7.52 7.74 -11.63 -0.09 7.43 16 12 O -0.50 -8.18 14.03 5.48 0.08 -8.10 16 13 C 0.50 8.62 6.40 -11.63 -0.07 8.55 16 14 O -0.53 -9.75 13.61 5.48 0.07 -9.67 16 15 N -0.66 -12.75 5.00 -55.39 -0.28 -13.03 16 16 C 0.25 5.56 1.85 -69.08 -0.13 5.44 16 17 H 0.05 1.10 6.13 -51.93 -0.32 0.78 16 18 C -0.63 -16.33 8.93 -34.44 -0.31 -16.64 16 19 H 0.07 1.81 7.96 -52.48 -0.42 1.39 16 20 C 0.05 1.32 5.20 -17.82 -0.09 1.23 16 21 N -0.88 -25.28 13.70 55.43 0.76 -24.52 16 22 Si 1.03 23.70 26.51 -169.99 -4.51 19.19 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -5.84 6.17 56.52 0.35 -5.49 16 26 C -0.13 -2.83 5.36 -26.73 -0.14 -2.97 16 27 C -0.15 -2.68 8.49 37.15 0.32 -2.36 16 28 C 0.15 1.95 9.97 -16.98 -0.17 1.79 16 29 N -0.49 -6.14 9.87 -10.57 -0.10 -6.25 16 30 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 37 H 0.07 0.62 8.01 -51.93 -0.42 0.20 16 38 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.43 4.09 8.30 -40.82 -0.34 3.75 16 40 H 0.41 7.60 7.99 -40.82 -0.33 7.28 16 41 H 0.27 7.76 8.73 -40.82 -0.36 7.40 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.53 5.58 -51.93 -0.29 1.24 16 44 H 0.04 0.78 5.67 -51.93 -0.29 0.48 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 1.04 7.77 -51.93 -0.40 0.64 16 47 H 0.18 2.39 6.39 -52.49 -0.34 2.06 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -29.45 381.93 -7.32 -36.77 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.83 Total: 9.91 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.11 Total: 3.18 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.21 Total: -57.04 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.15 Total: -17.77 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.51 Total: 19.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.45 -7.32 -36.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361926759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.682 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds