Wall clock time and date at job start Tue Mar 31 2020 19:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46974 * 2 1 4 4 H 1.08998 * 109.46533 * 304.99672 * 3 2 1 5 5 C 1.53001 * 109.46854 * 64.99733 * 3 2 1 6 6 C 1.50694 * 109.47026 * 185.00085 * 3 2 1 7 7 N 1.31803 * 119.03131 * 119.99826 * 6 3 2 8 8 C 1.32262 * 120.89587 * 179.97438 * 7 6 3 9 9 C 1.39285 * 119.00877 * 0.02562 * 8 7 6 10 10 N 1.39781 * 120.87420 * 180.02562 * 9 8 7 11 11 C 1.34786 * 119.99572 * 144.61464 * 10 9 8 12 12 O 1.21367 * 120.00382 * 4.27047 * 11 10 9 13 13 C 1.49354 * 119.99404 * 184.27458 * 11 10 9 14 14 O 1.21367 * 120.00214 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99941 * 179.97438 * 13 11 10 16 16 C 1.46503 * 120.00064 * 179.97438 * 15 13 11 17 17 H 1.09002 * 109.46992 * 325.00457 * 16 15 13 18 18 C 1.50700 * 109.47225 * 205.00026 * 16 15 13 19 19 H 1.08005 * 119.99713 * 354.26735 * 18 16 15 20 20 C 1.37870 * 120.00076 * 174.26323 * 18 16 15 21 21 N 1.31521 * 120.00122 * 155.57828 * 20 18 16 22 22 Si 1.86797 * 120.00167 * 335.58085 * 20 18 16 23 23 H 1.48505 * 109.47504 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.47035 * 299.99599 * 22 20 18 25 25 H 1.48498 * 109.47355 * 59.99566 * 22 20 18 26 26 C 1.52999 * 109.46584 * 85.00346 * 16 15 13 27 27 C 1.52995 * 109.47099 * 296.24162 * 26 16 15 28 28 C 1.39297 * 118.25171 * 0.27026 * 9 8 7 29 29 N 1.31808 * 119.03120 * 299.97534 * 6 3 2 30 30 H 1.08994 * 109.47179 * 299.99870 * 1 2 3 31 31 H 1.09005 * 109.47084 * 60.00408 * 1 2 3 32 32 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47179 * 240.00130 * 2 1 3 34 34 H 1.08995 * 109.46972 * 119.99496 * 2 1 3 35 35 H 1.09002 * 109.46636 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47030 * 299.99979 * 5 3 2 37 37 H 1.08997 * 109.47117 * 60.00387 * 5 3 2 38 38 H 1.07999 * 120.49480 * 180.02562 * 8 7 6 39 39 H 0.96989 * 120.00072 * 324.61646 * 10 9 8 40 40 H 0.97001 * 119.99855 * 0.02562 * 15 13 11 41 41 H 0.96995 * 119.99813 * 354.95998 * 21 20 18 42 42 H 1.08996 * 109.47512 * 56.24803 * 26 16 15 43 43 H 1.09005 * 109.46775 * 176.24731 * 26 16 15 44 44 H 1.08996 * 109.47072 * 60.00695 * 27 26 16 45 45 H 1.09003 * 109.47088 * 180.02562 * 27 26 16 46 46 H 1.09000 * 109.47457 * 300.00156 * 27 26 16 47 47 H 1.07995 * 120.49751 * 179.73192 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5418 1.4444 -0.1238 7 7 4.0980 2.0501 -1.1539 8 6 5.4124 2.0747 -1.2988 9 6 6.2091 1.4480 -0.3435 10 7 7.6022 1.4506 -0.4578 11 6 8.3689 1.5271 0.6481 12 8 7.8527 1.5155 1.7464 13 6 9.8538 1.6262 0.5218 14 8 10.3700 1.6373 -0.5766 15 7 10.6205 1.7032 1.6275 16 6 12.0771 1.7998 1.5037 17 1 12.4087 1.2124 0.6474 18 6 12.7241 1.2699 2.7573 19 1 12.1133 0.9848 3.6012 20 6 14.0957 1.1491 2.8270 21 7 14.6984 1.1611 3.9959 22 14 15.0982 0.9683 1.2612 23 1 16.5385 0.8575 1.6055 24 1 14.6668 -0.2536 0.5356 25 1 14.8863 2.1576 0.3976 26 6 12.4758 3.2633 1.3034 27 6 11.8958 3.7738 -0.0171 28 6 5.5808 0.8142 0.7260 29 7 4.2607 0.8406 0.8014 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.9981 3.1544 1.3071 36 1 0.5488 2.1252 1.3968 37 1 2.0698 1.5876 2.1491 38 1 5.8612 2.5733 -2.1452 39 1 8.0171 1.3974 -1.3329 40 1 10.2080 1.6939 2.5054 41 1 14.1875 1.3280 4.8033 42 1 12.0865 3.8619 2.1268 43 1 13.5626 3.3435 1.2779 44 1 10.8091 3.6936 0.0083 45 1 12.1802 4.8163 -0.1600 46 1 12.2852 3.1751 -0.8406 47 1 6.1632 0.3134 1.4851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361926759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:30 Heat of formation + Delta-G solvation = -56.509627 kcal Electronic energy + Delta-G solvation = -28327.822597 eV Core-core repulsion = 24316.637084 eV Total energy + Delta-G solvation = -4011.185513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.72875 -41.68037 -40.00724 -37.70119 -37.28356 -36.18704 -34.88652 -34.51512 -33.17493 -31.94289 -30.10326 -29.35675 -27.01937 -26.01438 -25.59855 -24.35818 -23.80643 -22.14738 -21.44973 -21.34852 -20.57725 -19.40667 -18.83806 -18.30554 -17.88209 -17.58535 -17.06135 -16.86741 -16.11801 -15.80830 -15.68982 -15.43285 -15.26847 -15.15143 -14.81873 -14.55269 -14.49882 -14.34212 -14.03474 -13.60882 -13.55502 -13.12032 -12.99769 -12.82405 -12.65126 -12.56019 -12.51348 -12.39047 -12.29272 -11.98518 -11.95624 -11.78505 -11.64727 -11.56674 -11.54410 -11.23072 -10.84864 -10.45648 -10.36562 -10.04920 -9.71141 -8.84072 -6.44892 -0.51122 -0.09339 0.31445 1.09701 1.48781 1.52313 1.72095 2.00885 2.44170 2.49955 2.57798 2.82218 2.93226 3.03293 3.27643 3.38870 3.71336 3.90826 3.97786 4.06229 4.28250 4.36856 4.37220 4.48588 4.52576 4.61001 4.65295 4.69105 4.77403 4.78402 4.98024 5.07561 5.08864 5.12687 5.15884 5.16775 5.21650 5.28101 5.37725 5.44862 5.49607 5.50331 5.59427 5.71642 5.80773 5.99128 6.34763 6.48276 6.59291 6.93498 6.94227 7.28335 8.53650 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027783 B = 0.002167 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.550582 B =12915.131243 C =13319.720841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.020 4.020 4 H 0.105 0.895 5 C -0.139 4.139 6 C 0.297 3.703 7 N -0.508 5.508 8 C 0.147 3.853 9 C 0.029 3.971 10 N -0.619 5.619 11 C 0.519 3.481 12 O -0.520 6.520 13 C 0.502 3.498 14 O -0.534 6.534 15 N -0.668 5.668 16 C 0.253 3.747 17 H 0.040 0.960 18 C -0.630 4.630 19 H 0.037 0.963 20 C 0.004 3.996 21 N -0.915 5.915 22 Si 1.065 2.935 23 H -0.284 1.284 24 H -0.269 1.269 25 H -0.245 1.245 26 C -0.133 4.133 27 C -0.136 4.136 28 C 0.140 3.860 29 N -0.507 5.507 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.209 0.791 39 H 0.439 0.561 40 H 0.408 0.592 41 H 0.260 0.740 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.729 1.908 -12.949 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.040 4.040 4 H 0.124 0.876 5 C -0.197 4.197 6 C 0.030 3.970 7 N -0.221 5.221 8 C -0.022 4.022 9 C -0.070 4.070 10 N -0.268 5.268 11 C 0.301 3.699 12 O -0.395 6.395 13 C 0.282 3.718 14 O -0.413 6.413 15 N -0.317 5.317 16 C 0.150 3.850 17 H 0.057 0.943 18 C -0.668 4.668 19 H 0.056 0.944 20 C -0.199 4.199 21 N -0.548 5.548 22 Si 0.886 3.114 23 H -0.210 1.210 24 H -0.194 1.194 25 H -0.169 1.169 26 C -0.172 4.172 27 C -0.193 4.193 28 C -0.028 4.028 29 N -0.220 5.220 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.280 0.720 40 H 0.243 0.757 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -24.093 1.688 -13.379 27.610 hybrid contribution -0.070 -0.016 1.368 1.370 sum -24.163 1.672 -12.011 27.035 Atomic orbital electron populations 1.21796 0.93448 1.02480 1.02807 1.21469 0.97453 0.93802 1.01918 1.20137 0.83872 0.98960 1.01061 0.87648 1.21819 1.02992 0.99438 0.95406 1.23746 0.98943 0.89151 0.85176 1.68369 1.11876 1.18605 1.23216 1.23724 0.88309 0.91965 0.98232 1.19593 0.84451 1.02109 1.00877 1.42763 1.02887 1.70104 1.11086 1.20423 0.88324 0.76601 0.84549 1.90766 1.74568 1.47317 1.26824 1.19769 0.87044 0.79396 0.85598 1.90743 1.74374 1.50238 1.25935 1.46060 1.08429 1.68632 1.08628 1.18988 0.75554 0.93766 0.96737 0.94274 1.22133 0.94123 1.50142 1.00363 0.94435 1.26843 0.96734 0.91863 1.04414 1.70966 1.39042 1.45142 0.99678 0.83779 0.75218 0.79427 0.72934 1.20984 1.19400 1.16911 1.22182 1.00620 0.97074 0.97337 1.21802 1.00280 1.00356 0.96859 1.23536 0.90356 0.92574 0.96316 1.68273 1.06389 1.19111 1.28276 0.91501 0.91793 0.92057 0.92840 0.91948 0.93469 0.89143 0.92725 0.77399 0.71957 0.75687 0.93058 0.93087 0.92189 0.93577 0.92299 0.92902 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 71.98 0.70 -0.75 16 2 C -0.11 -1.55 5.26 30.60 0.16 -1.39 16 3 C -0.02 -0.32 2.72 -11.54 -0.03 -0.35 16 4 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 5 C -0.14 -2.05 8.84 71.98 0.64 -1.41 16 6 C 0.30 6.44 6.34 138.74 0.88 7.32 16 7 N -0.51 -10.48 10.29 -187.34 -1.93 -12.41 16 8 C 0.15 2.58 11.26 84.88 0.96 3.54 16 9 C 0.03 0.61 6.33 38.38 0.24 0.86 16 10 N -0.62 -13.04 5.35 -304.24 -1.63 -14.67 16 11 C 0.52 14.69 7.74 87.24 0.68 15.37 16 12 O -0.52 -16.80 14.03 -3.30 -0.05 -16.85 16 13 C 0.50 16.79 6.40 87.24 0.56 17.35 16 14 O -0.53 -18.57 13.61 -3.30 -0.04 -18.62 16 15 N -0.67 -25.71 5.00 -447.52 -2.24 -27.95 16 16 C 0.25 11.23 1.85 44.24 0.08 11.31 16 17 H 0.04 1.82 6.13 -2.39 -0.01 1.80 16 18 C -0.63 -33.23 8.93 25.60 0.23 -33.00 16 19 H 0.04 2.14 7.96 -2.91 -0.02 2.12 16 20 C 0.00 0.23 5.20 84.65 0.44 0.67 16 21 N -0.92 -53.86 13.70 21.45 0.29 -53.56 16 22 Si 1.07 47.29 26.51 68.60 1.82 49.11 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.25 -9.75 6.17 99.48 0.61 -9.14 16 26 C -0.13 -5.42 5.36 30.59 0.16 -5.26 16 27 C -0.14 -4.64 8.49 71.98 0.61 -4.03 16 28 C 0.14 3.52 9.97 84.88 0.85 4.36 16 29 N -0.51 -12.50 9.87 -187.34 -1.85 -14.35 16 30 H 0.07 0.56 6.56 -2.39 -0.02 0.55 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.05 8.12 -2.39 -0.02 1.04 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.91 6.56 -2.39 -0.02 0.89 16 37 H 0.05 0.96 8.01 -2.39 -0.02 0.94 16 38 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.44 7.19 8.30 -92.72 -0.77 6.42 16 40 H 0.41 15.49 7.99 -92.71 -0.74 14.75 16 41 H 0.26 15.45 8.73 -92.71 -0.81 14.64 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.54 5.58 -2.38 -0.01 2.52 16 44 H 0.05 1.53 5.67 -2.39 -0.01 1.52 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.83 7.77 -2.39 -0.02 1.81 16 47 H 0.17 4.57 6.39 -2.91 -0.02 4.56 16 Total: -1.00 -64.04 381.93 0.90 -63.14 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.62 Total: 31.58 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.15 Total: 14.57 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -7.35 Total: -122.94 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.09 Total: -35.47 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.82 Total: 49.11 kcal Total: -64.04 0.90 -63.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361926759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds