Wall clock time and date at job start Tue Mar 31 2020 19:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47197 * 2 1 4 4 H 1.09006 * 109.46727 * 55.00489 * 3 2 1 5 5 C 1.52999 * 109.47380 * 295.00841 * 3 2 1 6 6 C 1.50695 * 109.47032 * 174.99878 * 3 2 1 7 7 N 1.31802 * 119.03586 * 240.00136 * 6 3 2 8 8 C 1.32250 * 120.90248 * 180.02562 * 7 6 3 9 9 C 1.39300 * 119.00434 * 0.02562 * 8 7 6 10 10 N 1.39775 * 120.86917 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99623 * 147.65784 * 10 9 8 12 12 O 1.21377 * 120.00312 * 354.73976 * 11 10 9 13 13 C 1.49357 * 120.00017 * 174.73199 * 11 10 9 14 14 O 1.21360 * 120.00135 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00017 * 180.02562 * 13 11 10 16 16 C 1.46497 * 119.99724 * 180.02562 * 15 13 11 17 17 H 1.08993 * 109.47623 * 34.99908 * 16 15 13 18 18 C 1.50703 * 109.46903 * 155.00488 * 16 15 13 19 19 H 1.07994 * 120.00410 * 359.97438 * 18 16 15 20 20 C 1.37883 * 119.99671 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00387 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99626 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47270 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46761 * 119.99989 * 22 20 18 25 25 H 1.48500 * 109.47352 * 240.00016 * 22 20 18 26 26 C 1.53009 * 109.46805 * 274.99688 * 16 15 13 27 27 C 1.52998 * 109.46947 * 65.00460 * 26 16 15 28 28 C 1.39283 * 118.24737 * 0.27110 * 9 8 7 29 29 N 1.31805 * 119.02562 * 60.03037 * 6 3 2 30 30 H 1.08996 * 109.47517 * 59.99368 * 1 2 3 31 31 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46477 * 299.99577 * 1 2 3 33 33 H 1.09000 * 109.46615 * 240.00690 * 2 1 3 34 34 H 1.08993 * 109.47022 * 120.00650 * 2 1 3 35 35 H 1.08998 * 109.46815 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.46442 * 299.99683 * 5 3 2 37 37 H 1.08998 * 109.47456 * 59.99491 * 5 3 2 38 38 H 1.08000 * 120.49670 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00860 * 327.65128 * 10 9 8 40 40 H 0.96997 * 119.99682 * 0.27931 * 15 13 11 41 41 H 0.97001 * 120.00476 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47058 * 185.00518 * 26 16 15 43 43 H 1.08995 * 109.46890 * 305.00331 * 26 16 15 44 44 H 1.09000 * 109.47075 * 59.99877 * 27 26 16 45 45 H 1.08996 * 109.47103 * 179.97438 * 27 26 16 46 46 H 1.09001 * 109.47289 * 299.99916 * 27 26 16 47 47 H 1.08004 * 120.49330 * 179.70202 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5419 1.4443 0.1239 7 7 4.0982 2.0499 1.1539 8 6 5.4125 2.0745 1.2988 9 6 6.2092 1.4486 0.3428 10 7 7.6022 1.4503 0.4577 11 6 8.3172 0.4024 0.0024 12 8 7.7481 -0.5831 -0.4198 13 6 9.8098 0.4538 0.0172 14 8 10.3789 1.4389 0.4397 15 7 10.5247 -0.5939 -0.4385 16 6 11.9887 -0.5437 -0.4235 17 1 12.3244 0.0073 0.4550 18 6 12.5390 -1.9459 -0.3776 19 1 11.8656 -2.7900 -0.3609 20 6 13.9023 -2.1511 -0.3570 21 7 14.7224 -1.1233 -0.3778 22 14 14.5844 -3.8892 -0.2995 23 1 13.4618 -4.8612 -0.2841 24 1 15.4298 -4.1289 -1.4965 25 1 15.4037 -4.0591 0.9273 26 6 12.4879 0.1589 -1.6877 27 6 12.0326 1.6195 -1.6729 28 6 5.5814 0.8257 -0.7332 29 7 4.2606 0.8405 -0.8015 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9990 3.1542 -1.3073 36 1 2.0698 1.5876 -2.1491 37 1 0.5489 2.1254 -1.3968 38 1 5.8613 2.5731 2.1452 39 1 8.0545 2.2056 0.8650 40 1 10.0698 -1.3797 -0.7799 41 1 15.6815 -1.2676 -0.3629 42 1 13.5767 0.1180 -1.7203 43 1 12.0791 -0.3402 -2.5662 44 1 12.4415 2.1186 -0.7943 45 1 12.3886 2.1202 -2.5733 46 1 10.9439 1.6605 -1.6403 47 1 6.1642 0.3337 -1.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361926765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:38 Heat of formation + Delta-G solvation = -36.396490 kcal Electronic energy + Delta-G solvation = -28266.773569 eV Core-core repulsion = 24256.460227 eV Total energy + Delta-G solvation = -4010.313342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69541 -40.36243 -38.49721 -36.80651 -35.66021 -34.97065 -33.93982 -32.51598 -31.14148 -31.03204 -29.31272 -27.39384 -25.96906 -25.08093 -24.56427 -23.32265 -22.58168 -20.69268 -20.60180 -19.63648 -19.01949 -17.71483 -17.50114 -16.97418 -16.45201 -15.86774 -15.64075 -15.25835 -15.18290 -15.06702 -14.59084 -14.39031 -14.00961 -13.84535 -13.68912 -13.47064 -12.94473 -12.82037 -12.45356 -12.22852 -12.11966 -11.91170 -11.70299 -11.58773 -11.42193 -11.36393 -11.19201 -11.06871 -11.00868 -10.98250 -10.93690 -10.85739 -10.43100 -10.33637 -9.78452 -9.52561 -9.21965 -9.19472 -8.68219 -8.63913 -8.14568 -6.23897 -4.33826 0.49801 0.84163 1.66402 2.37760 3.18685 3.27255 3.30513 3.40530 3.58143 3.62710 3.85521 3.93159 4.24081 4.28636 4.59956 4.67568 4.69045 4.73639 4.95172 5.08539 5.10776 5.20121 5.23150 5.32016 5.50892 5.57994 5.67250 5.71633 5.77903 5.81070 6.04872 6.09216 6.23812 6.24890 6.28011 6.46931 6.69491 6.78203 6.86436 6.99508 7.03589 7.18527 7.37048 7.54842 7.63942 7.73047 7.87164 8.00505 8.31232 8.51011 8.76629 9.33346 10.81462 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.002156 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.992592 B =12983.782758 C =13619.816575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.019 4.019 4 H 0.095 0.905 5 C -0.142 4.142 6 C 0.299 3.701 7 N -0.497 5.497 8 C 0.128 3.872 9 C 0.044 3.956 10 N -0.642 5.642 11 C 0.508 3.492 12 O -0.503 6.503 13 C 0.496 3.504 14 O -0.526 6.526 15 N -0.664 5.664 16 C 0.267 3.733 17 H 0.056 0.944 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.881 5.881 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.130 4.130 27 C -0.139 4.139 28 C 0.151 3.849 29 N -0.490 5.490 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.173 0.827 39 H 0.427 0.573 40 H 0.402 0.598 41 H 0.266 0.734 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 6.666 0.306 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.113 0.887 5 C -0.200 4.200 6 C 0.031 3.969 7 N -0.210 5.210 8 C -0.041 4.041 9 C -0.056 4.056 10 N -0.290 5.290 11 C 0.292 3.708 12 O -0.376 6.376 13 C 0.274 3.726 14 O -0.405 6.405 15 N -0.313 5.313 16 C 0.167 3.833 17 H 0.074 0.926 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.169 4.169 27 C -0.196 4.196 28 C -0.018 4.018 29 N -0.203 5.203 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.190 0.810 39 H 0.266 0.734 40 H 0.237 0.763 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -22.620 6.656 0.204 23.580 hybrid contribution 1.578 -0.866 0.236 1.816 sum -21.042 5.790 0.440 21.829 Atomic orbital electron populations 1.21816 0.95196 1.01882 1.01992 1.21526 0.95990 0.94712 1.02977 1.19975 0.85465 0.98176 1.00297 0.88715 1.21839 1.01609 1.00179 0.96399 1.23146 0.97744 0.89701 0.86300 1.68221 1.11383 1.18373 1.23048 1.23133 0.88700 0.96116 0.96118 1.19614 0.85065 1.03316 0.97556 1.43100 1.03460 1.22311 1.60145 1.21213 0.90187 0.82117 0.77317 1.90755 1.72332 1.31019 1.43451 1.19446 0.85886 0.85509 0.81767 1.90761 1.70919 1.31787 1.47010 1.46496 1.10283 1.16448 1.58068 1.19062 0.71311 0.97112 0.95843 0.92635 1.21230 0.92115 0.91194 1.53045 0.91677 1.24875 0.96642 0.97664 0.94372 1.69881 1.03413 1.29666 1.48860 0.86348 0.79046 0.83718 0.77773 1.19615 1.20767 1.20801 1.21976 1.04724 0.92461 0.97690 1.21858 0.99567 0.98520 0.99693 1.23451 0.90177 0.93559 0.94629 1.68231 1.06318 1.17344 1.28381 0.92232 0.92522 0.92660 0.90662 0.92149 0.92849 0.91380 0.91435 0.80974 0.73351 0.76305 0.92431 0.87745 0.94587 0.92904 0.95392 0.94692 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.59 16 2 C -0.11 -0.95 5.26 -26.73 -0.14 -1.09 16 3 C -0.02 -0.17 2.72 -91.77 -0.25 -0.42 16 4 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 5 C -0.14 -1.10 8.84 37.16 0.33 -0.77 16 6 C 0.30 3.49 6.34 -157.18 -1.00 2.49 16 7 N -0.50 -5.82 10.29 -10.56 -0.11 -5.93 16 8 C 0.13 1.35 11.26 -16.98 -0.19 1.16 16 9 C 0.04 0.53 6.33 -83.45 -0.53 0.00 16 10 N -0.64 -7.75 5.35 -10.11 -0.05 -7.81 16 11 C 0.51 7.75 7.66 -11.63 -0.09 7.66 16 12 O -0.50 -8.36 14.18 5.47 0.08 -8.28 16 13 C 0.50 8.98 6.46 -11.63 -0.08 8.91 16 14 O -0.53 -10.35 13.62 5.49 0.07 -10.28 16 15 N -0.66 -13.19 5.01 -55.39 -0.28 -13.47 16 16 C 0.27 6.31 2.24 -69.08 -0.15 6.15 16 17 H 0.06 1.49 7.58 -51.93 -0.39 1.09 16 18 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 19 H 0.07 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 21 N -0.88 -23.53 11.29 55.43 0.63 -22.90 16 22 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 27 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 28 C 0.15 1.96 9.94 -16.98 -0.17 1.79 16 29 N -0.49 -6.23 9.87 -10.57 -0.10 -6.33 16 30 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 37 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 38 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.43 4.38 8.30 -40.82 -0.34 4.04 16 40 H 0.40 7.50 8.01 -40.82 -0.33 7.18 16 41 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.03 0.68 5.64 -51.93 -0.29 0.39 16 47 H 0.18 2.37 6.48 -52.48 -0.34 2.03 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -28.55 385.30 -7.96 -36.51 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.85 Total: 10.24 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.13 Total: 7.43 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.08 Total: -56.44 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.56 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.55 -7.96 -36.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361926765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.109 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds