Wall clock time and date at job start Tue Mar 31 2020 19:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47197 * 2 1 4 4 H 1.09006 * 109.46727 * 55.00489 * 3 2 1 5 5 C 1.52999 * 109.47380 * 295.00841 * 3 2 1 6 6 C 1.50695 * 109.47032 * 174.99878 * 3 2 1 7 7 N 1.31802 * 119.03586 * 240.00136 * 6 3 2 8 8 C 1.32250 * 120.90248 * 180.02562 * 7 6 3 9 9 C 1.39300 * 119.00434 * 0.02562 * 8 7 6 10 10 N 1.39775 * 120.86917 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99623 * 147.65784 * 10 9 8 12 12 O 1.21377 * 120.00312 * 354.73976 * 11 10 9 13 13 C 1.49357 * 120.00017 * 174.73199 * 11 10 9 14 14 O 1.21360 * 120.00135 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00017 * 180.02562 * 13 11 10 16 16 C 1.46497 * 119.99724 * 180.02562 * 15 13 11 17 17 H 1.08993 * 109.47623 * 34.99908 * 16 15 13 18 18 C 1.50703 * 109.46903 * 155.00488 * 16 15 13 19 19 H 1.07994 * 120.00410 * 359.97438 * 18 16 15 20 20 C 1.37883 * 119.99671 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00387 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99626 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47270 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46761 * 119.99989 * 22 20 18 25 25 H 1.48500 * 109.47352 * 240.00016 * 22 20 18 26 26 C 1.53009 * 109.46805 * 274.99688 * 16 15 13 27 27 C 1.52998 * 109.46947 * 65.00460 * 26 16 15 28 28 C 1.39283 * 118.24737 * 0.27110 * 9 8 7 29 29 N 1.31805 * 119.02562 * 60.03037 * 6 3 2 30 30 H 1.08996 * 109.47517 * 59.99368 * 1 2 3 31 31 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46477 * 299.99577 * 1 2 3 33 33 H 1.09000 * 109.46615 * 240.00690 * 2 1 3 34 34 H 1.08993 * 109.47022 * 120.00650 * 2 1 3 35 35 H 1.08998 * 109.46815 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.46442 * 299.99683 * 5 3 2 37 37 H 1.08998 * 109.47456 * 59.99491 * 5 3 2 38 38 H 1.08000 * 120.49670 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00860 * 327.65128 * 10 9 8 40 40 H 0.96997 * 119.99682 * 0.27931 * 15 13 11 41 41 H 0.97001 * 120.00476 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47058 * 185.00518 * 26 16 15 43 43 H 1.08995 * 109.46890 * 305.00331 * 26 16 15 44 44 H 1.09000 * 109.47075 * 59.99877 * 27 26 16 45 45 H 1.08996 * 109.47103 * 179.97438 * 27 26 16 46 46 H 1.09001 * 109.47289 * 299.99916 * 27 26 16 47 47 H 1.08004 * 120.49330 * 179.70202 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5419 1.4443 0.1239 7 7 4.0982 2.0499 1.1539 8 6 5.4125 2.0745 1.2988 9 6 6.2092 1.4486 0.3428 10 7 7.6022 1.4503 0.4577 11 6 8.3172 0.4024 0.0024 12 8 7.7481 -0.5831 -0.4198 13 6 9.8098 0.4538 0.0172 14 8 10.3789 1.4389 0.4397 15 7 10.5247 -0.5939 -0.4385 16 6 11.9887 -0.5437 -0.4235 17 1 12.3244 0.0073 0.4550 18 6 12.5390 -1.9459 -0.3776 19 1 11.8656 -2.7900 -0.3609 20 6 13.9023 -2.1511 -0.3570 21 7 14.7224 -1.1233 -0.3778 22 14 14.5844 -3.8892 -0.2995 23 1 13.4618 -4.8612 -0.2841 24 1 15.4298 -4.1289 -1.4965 25 1 15.4037 -4.0591 0.9273 26 6 12.4879 0.1589 -1.6877 27 6 12.0326 1.6195 -1.6729 28 6 5.5814 0.8257 -0.7332 29 7 4.2606 0.8405 -0.8015 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9990 3.1542 -1.3073 36 1 2.0698 1.5876 -2.1491 37 1 0.5489 2.1254 -1.3968 38 1 5.8613 2.5731 2.1452 39 1 8.0545 2.2056 0.8650 40 1 10.0698 -1.3797 -0.7799 41 1 15.6815 -1.2676 -0.3629 42 1 13.5767 0.1180 -1.7203 43 1 12.0791 -0.3402 -2.5662 44 1 12.4415 2.1186 -0.7943 45 1 12.3886 2.1202 -2.5733 46 1 10.9439 1.6605 -1.6403 47 1 6.1642 0.3337 -1.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361926765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:37 Heat of formation + Delta-G solvation = -54.928532 kcal Electronic energy + Delta-G solvation = -28267.577178 eV Core-core repulsion = 24256.460227 eV Total energy + Delta-G solvation = -4011.116952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.70109 -41.61596 -39.91430 -37.67070 -37.18218 -36.15689 -34.86748 -34.33991 -32.83574 -31.91753 -30.07334 -29.17992 -27.00014 -26.01360 -25.71957 -24.77096 -23.76936 -22.03880 -21.43036 -21.26831 -20.36606 -18.79549 -18.74120 -18.04080 -17.82354 -17.37461 -17.09474 -16.79446 -16.16033 -15.99134 -15.77530 -15.59842 -15.18638 -15.05182 -14.75930 -14.63015 -14.36431 -13.89043 -13.59518 -13.50458 -13.21979 -13.08644 -13.01314 -12.88671 -12.76780 -12.69807 -12.55382 -12.37474 -12.16513 -12.11743 -11.96575 -11.93059 -11.67361 -11.60540 -11.52270 -11.10265 -10.77995 -10.56931 -10.34441 -9.86764 -9.65537 -8.19713 -6.36215 -0.49421 -0.07883 0.39284 1.14276 1.43269 1.46296 1.56935 2.07742 2.37252 2.59022 2.61510 2.84717 3.04926 3.10461 3.32812 3.45172 3.71841 3.92253 3.99360 4.07522 4.38746 4.48904 4.53597 4.55125 4.62282 4.66416 4.70788 4.71574 4.80188 5.00636 5.01698 5.10404 5.16960 5.18069 5.21851 5.29678 5.33946 5.38440 5.46646 5.50411 5.55368 5.61374 5.75838 5.81319 5.85551 6.11212 6.41488 6.65707 6.72230 6.95775 7.07262 7.35577 8.85447 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.002156 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.992592 B =12983.782758 C =13619.816575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.020 4.020 4 H 0.104 0.896 5 C -0.137 4.137 6 C 0.294 3.706 7 N -0.507 5.507 8 C 0.143 3.857 9 C 0.033 3.967 10 N -0.621 5.621 11 C 0.520 3.480 12 O -0.517 6.517 13 C 0.498 3.502 14 O -0.541 6.541 15 N -0.669 5.669 16 C 0.276 3.724 17 H 0.018 0.982 18 C -0.552 4.552 19 H 0.068 0.932 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.282 1.282 26 C -0.124 4.124 27 C -0.127 4.127 28 C 0.139 3.861 29 N -0.504 5.504 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.208 0.792 39 H 0.438 0.562 40 H 0.409 0.591 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.881 6.943 0.590 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.040 4.040 4 H 0.123 0.877 5 C -0.195 4.195 6 C 0.027 3.973 7 N -0.220 5.220 8 C -0.026 4.026 9 C -0.067 4.067 10 N -0.270 5.270 11 C 0.303 3.697 12 O -0.392 6.392 13 C 0.278 3.722 14 O -0.420 6.420 15 N -0.319 5.319 16 C 0.174 3.826 17 H 0.036 0.964 18 C -0.590 4.590 19 H 0.086 0.914 20 C -0.179 4.179 21 N -0.546 5.546 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.208 1.208 26 C -0.163 4.163 27 C -0.184 4.184 28 C -0.029 4.029 29 N -0.217 5.217 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.224 0.776 39 H 0.279 0.721 40 H 0.244 0.756 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -24.578 6.959 0.491 25.549 hybrid contribution 2.087 -0.883 0.189 2.274 sum -22.491 6.076 0.680 23.307 Atomic orbital electron populations 1.21792 0.93329 1.02437 1.02884 1.21480 0.97559 0.94056 1.01737 1.20129 0.83828 0.98729 1.01303 0.87739 1.21808 1.02949 0.99549 0.95169 1.23739 0.98962 0.88745 0.85839 1.68349 1.11801 1.18738 1.23084 1.23679 0.88228 0.94549 0.96182 1.19605 0.84561 1.04384 0.98104 1.42824 1.03605 1.21570 1.59004 1.20440 0.88602 0.82787 0.77919 1.90765 1.72038 1.31807 1.44554 1.19818 0.87275 0.84556 0.80558 1.90753 1.71835 1.32217 1.47225 1.46245 1.09039 1.17496 1.59100 1.18656 0.73397 0.95973 0.94577 0.96437 1.21542 0.92540 0.92076 1.52854 0.91410 1.25657 0.97024 1.01159 0.94079 1.70004 1.03611 1.31482 1.49544 0.85372 0.78329 0.79491 0.77611 1.18997 1.20391 1.20792 1.21831 1.03035 0.94052 0.97422 1.21713 0.99873 0.96856 0.99954 1.23431 0.90555 0.93886 0.95030 1.68262 1.06244 1.18136 1.29084 0.91232 0.92200 0.91832 0.91946 0.93351 0.93101 0.92569 0.89233 0.77556 0.72106 0.75572 0.92381 0.90340 0.94144 0.94445 0.93331 0.93941 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 71.98 0.70 -0.86 16 2 C -0.11 -1.72 5.26 30.60 0.16 -1.56 16 3 C -0.02 -0.32 2.72 -11.54 -0.03 -0.35 16 4 H 0.10 1.52 8.09 -2.38 -0.02 1.50 16 5 C -0.14 -1.90 8.84 71.98 0.64 -1.26 16 6 C 0.29 6.53 6.34 138.74 0.88 7.41 16 7 N -0.51 -10.88 10.29 -187.34 -1.93 -12.81 16 8 C 0.14 2.67 11.26 84.89 0.96 3.63 16 9 C 0.03 0.73 6.33 38.38 0.24 0.97 16 10 N -0.62 -14.10 5.35 -304.24 -1.63 -15.73 16 11 C 0.52 15.45 7.66 87.24 0.67 16.12 16 12 O -0.52 -16.94 14.18 -3.33 -0.05 -16.98 16 13 C 0.50 17.94 6.46 87.24 0.56 18.51 16 14 O -0.54 -21.22 13.62 -3.28 -0.04 -21.26 16 15 N -0.67 -26.77 5.01 -447.52 -2.24 -29.01 16 16 C 0.28 13.30 2.24 44.25 0.10 13.40 16 17 H 0.02 0.98 7.58 -2.39 -0.02 0.97 16 18 C -0.55 -28.26 8.73 25.60 0.22 -28.03 16 19 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.02 1.13 5.29 84.66 0.45 1.58 16 21 N -0.91 -49.43 11.29 21.45 0.24 -49.19 16 22 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 C -0.12 -5.74 5.45 30.60 0.17 -5.57 16 27 C -0.13 -5.14 8.51 71.98 0.61 -4.53 16 28 C 0.14 3.54 9.94 84.88 0.84 4.39 16 29 N -0.50 -12.56 9.87 -187.34 -1.85 -14.40 16 30 H 0.07 0.60 6.56 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.92 8.01 -2.39 -0.02 0.90 16 37 H 0.09 0.84 6.56 -2.39 -0.02 0.82 16 38 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.44 8.14 8.30 -92.71 -0.77 7.37 16 40 H 0.41 15.29 8.01 -92.71 -0.74 14.54 16 41 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.08 4.06 5.95 -2.39 -0.01 4.05 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.63 5.64 -2.39 -0.01 1.61 16 47 H 0.17 4.54 6.48 -2.91 -0.02 4.52 16 Total: -1.00 -61.63 385.30 1.20 -60.44 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.50 Total: 31.92 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.17 Total: 23.84 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.41 Total: -121.14 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.09 Total: -38.25 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -61.63 1.20 -60.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361926765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.509 kcal (2) G-P(sol) polarization free energy of solvation -61.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds