Wall clock time and date at job start Tue Mar 31 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 C 1.52998 * 109.47255 * 120.00093 * 2 1 3 5 5 N 1.46501 * 109.47188 * 175.00070 * 4 2 1 6 6 N 1.40069 * 126.09942 * 269.95573 * 5 4 2 7 7 C 1.30842 * 108.42466 * 180.02562 * 6 5 4 8 8 C 1.39700 * 108.45986 * 359.76479 * 7 6 5 9 9 C 1.35855 * 126.09892 * 89.99911 * 5 4 2 10 10 N 1.39200 * 126.27099 * 359.94295 * 9 5 4 11 11 C 1.34780 * 120.00039 * 179.97438 * 10 9 5 12 12 O 1.21383 * 119.99647 * 359.97438 * 11 10 9 13 13 C 1.49307 * 119.99910 * 180.27563 * 11 10 9 14 14 O 1.21365 * 120.00279 * 354.75665 * 13 11 10 15 15 N 1.34771 * 119.99744 * 174.75400 * 13 11 10 16 16 C 1.46501 * 119.99975 * 185.77866 * 15 13 11 17 17 C 1.53004 * 109.47285 * 183.69557 * 16 15 13 18 18 C 1.50706 * 115.54814 * 306.41195 * 17 16 15 19 19 H 1.08002 * 119.99728 * 145.10867 * 18 17 16 20 20 C 1.37872 * 119.99886 * 325.11397 * 18 17 16 21 21 N 1.31513 * 120.00342 * 349.44230 * 20 18 17 22 22 Si 1.86811 * 119.99730 * 169.44129 * 20 18 17 23 23 H 1.48498 * 109.46738 * 59.99943 * 22 20 18 24 24 H 1.48495 * 109.46826 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46841 * 300.00138 * 22 20 18 26 26 C 1.53002 * 117.49895 * 160.74653 * 17 16 15 27 27 C 1.52998 * 117.49813 * 92.08490 * 17 16 15 28 28 H 1.09001 * 109.46851 * 299.99988 * 1 2 3 29 29 H 1.09002 * 109.46816 * 59.99516 * 1 2 3 30 30 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47267 * 240.00197 * 2 1 3 32 32 H 1.08992 * 109.47623 * 299.99925 * 3 2 1 33 33 H 1.09001 * 109.47343 * 60.00313 * 3 2 1 34 34 H 1.09005 * 109.47081 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47167 * 55.00150 * 4 2 1 36 36 H 1.09007 * 109.47057 * 295.00069 * 4 2 1 37 37 H 1.08005 * 125.77671 * 180.02562 * 7 6 5 38 38 H 1.07997 * 126.07372 * 180.24353 * 8 7 6 39 39 H 0.97001 * 120.00250 * 359.97438 * 10 9 5 40 40 H 0.96996 * 120.00488 * 5.77226 * 15 13 11 41 41 H 1.09003 * 109.47069 * 303.69605 * 16 15 13 42 42 H 1.09005 * 109.47316 * 63.69191 * 16 15 13 43 43 H 0.97003 * 119.99786 * 185.03256 * 21 20 18 44 44 H 1.09005 * 117.49623 * 359.97438 * 26 17 16 45 45 H 1.09000 * 117.49723 * 145.01605 * 26 17 16 46 46 H 1.08996 * 117.49344 * 214.97714 * 27 17 16 47 47 H 1.08996 * 117.49915 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 7 4.2296 -1.8788 0.6230 7 6 5.5047 -1.6199 0.7611 8 6 5.6385 -0.3929 1.4156 9 6 4.3880 0.0792 1.6776 10 7 4.0768 1.2738 2.3209 11 6 5.0639 2.0818 2.7561 12 8 6.2241 1.7676 2.5874 13 6 4.7301 3.3601 3.4516 14 8 3.5740 3.7184 3.5411 15 7 5.7127 4.1162 3.9799 16 6 5.3786 5.3032 4.7709 17 6 6.6653 6.0275 5.1721 18 6 7.6971 5.1803 5.8712 19 1 8.7484 5.3605 5.7020 20 6 7.2989 4.1751 6.7267 21 7 6.0397 4.0857 7.0955 22 14 8.5481 2.9398 7.3620 23 1 9.6100 3.6531 8.1161 24 1 7.8718 1.9687 8.2590 25 1 9.1555 2.2163 6.2162 26 6 6.5480 7.4925 5.5977 27 6 7.1707 7.1352 4.2456 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6055 -1.7197 1.2951 36 1 1.7517 -0.1583 2.1370 37 1 6.3166 -2.2465 0.4224 38 1 6.5683 0.0935 1.6709 39 1 3.1496 1.5247 2.4561 40 1 6.6410 3.8745 3.8366 41 1 4.7553 5.9719 4.1772 42 1 4.8367 5.0018 5.6674 43 1 5.7727 3.4247 7.7534 44 1 5.5543 7.9404 5.5914 45 1 7.2175 7.8435 6.3830 46 1 8.2495 7.2514 4.1421 47 1 6.5868 7.3477 3.3501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430348805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:42 Heat of formation + Delta-G solvation = 35.588088 kcal Electronic energy + Delta-G solvation = -29377.080753 eV Core-core repulsion = 25369.888897 eV Total energy + Delta-G solvation = -4007.191857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66243 -40.07274 -38.22817 -36.85537 -36.75914 -35.09879 -33.24045 -32.26509 -31.89672 -29.30391 -27.53410 -26.89969 -26.48039 -25.62632 -23.97955 -21.90677 -21.34467 -21.00705 -20.14136 -19.65185 -19.40588 -18.54091 -17.42590 -16.40289 -16.18080 -16.09569 -15.44517 -15.20691 -15.15572 -14.79452 -14.70470 -14.06869 -13.94856 -13.78043 -13.52965 -13.27633 -13.18377 -13.05302 -12.73808 -12.58423 -12.25197 -11.92282 -11.68288 -11.61756 -11.39112 -11.29130 -11.13779 -11.04483 -11.00660 -10.89465 -10.59998 -10.57596 -10.35437 -9.73772 -9.29383 -9.17193 -9.02164 -8.94125 -8.45102 -8.16650 -8.10693 -6.17421 -4.26629 1.33922 1.91557 2.13385 2.77478 2.91964 3.22208 3.28993 3.32500 3.59744 3.88599 4.23452 4.25634 4.38270 4.63157 4.70580 4.76312 4.98281 5.01677 5.13984 5.26284 5.29743 5.37187 5.40478 5.51560 5.53598 5.55502 5.72831 5.85870 5.88481 5.90801 5.96396 6.09992 6.18052 6.40693 6.46874 6.59076 6.70725 6.74785 6.83640 6.92914 7.00851 7.14162 7.23876 7.39463 7.67089 7.75452 7.79295 8.12988 8.20905 8.57780 8.72135 9.35432 10.80112 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003290 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.123234 B = 8508.162379 C = 9599.474326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.159 4.159 4 C 0.133 3.867 5 N -0.385 5.385 6 N -0.293 5.293 7 C 0.059 3.941 8 C -0.281 4.281 9 C 0.311 3.689 10 N -0.629 5.629 11 C 0.515 3.485 12 O -0.482 6.482 13 C 0.502 3.498 14 O -0.543 6.543 15 N -0.643 5.643 16 C 0.158 3.842 17 C 0.035 3.965 18 C -0.500 4.500 19 H 0.064 0.936 20 C 0.076 3.924 21 N -0.873 5.873 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.271 1.271 26 C -0.192 4.192 27 C -0.211 4.211 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.420 0.580 40 H 0.415 0.585 41 H 0.037 0.963 42 H 0.117 0.883 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -7.748 -11.814 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.216 4.216 4 C 0.012 3.988 5 N -0.174 5.174 6 N -0.115 5.115 7 C -0.127 4.127 8 C -0.312 4.312 9 C 0.091 3.909 10 N -0.279 5.279 11 C 0.297 3.703 12 O -0.352 6.352 13 C 0.280 3.720 14 O -0.423 6.423 15 N -0.291 5.291 16 C 0.036 3.964 17 C 0.034 3.966 18 C -0.538 4.538 19 H 0.082 0.918 20 C -0.128 4.128 21 N -0.509 5.509 22 Si 0.718 3.282 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.231 4.231 27 C -0.248 4.248 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.202 0.798 38 H 0.191 0.809 39 H 0.258 0.742 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.135 0.865 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.576 -8.595 -12.132 17.685 hybrid contribution 1.148 -0.005 0.800 1.399 sum -8.428 -8.599 -11.332 16.535 Atomic orbital electron populations 1.21784 0.93635 1.02208 1.02686 1.21564 0.96540 0.96943 0.98215 1.22006 1.01616 0.95273 1.02700 1.21831 0.74895 1.03101 0.99007 1.48785 1.05540 1.15435 1.47622 1.77390 1.04962 1.07967 1.21154 1.23739 0.94244 0.96474 0.98230 1.21729 0.96939 0.99433 1.13085 1.18094 0.90715 0.85222 0.96827 1.42644 1.11915 1.17481 1.55876 1.20778 0.84910 0.85487 0.79158 1.90709 1.19062 1.72801 1.52602 1.19307 0.86541 0.84359 0.81804 1.90710 1.19352 1.72125 1.60136 1.45716 1.09687 1.25937 1.47746 1.21288 0.96911 0.83440 0.94804 1.19149 0.94193 0.86714 0.96551 1.20487 0.91882 1.14598 1.26785 0.91764 1.24965 0.95276 0.97029 0.95575 1.69800 1.15718 1.35119 1.30217 0.86649 0.81363 0.81114 0.79066 1.20124 1.21180 1.19571 1.22933 0.99809 1.03358 0.96983 1.22988 0.99364 1.09463 0.92998 0.92069 0.91857 0.92250 0.90049 0.91805 0.92091 0.92410 0.88230 0.89426 0.79767 0.80874 0.74186 0.74813 0.94471 0.86538 0.92469 0.91398 0.90015 0.90390 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.11 -0.95 3.13 -90.62 -0.28 -1.23 16 3 C -0.16 -1.51 8.09 37.16 0.30 -1.21 16 4 C 0.13 1.24 5.70 -4.04 -0.02 1.22 16 5 N -0.39 -4.90 3.46 -60.29 -0.21 -5.11 16 6 N -0.29 -4.00 12.56 30.59 0.38 -3.61 16 7 C 0.06 0.76 12.00 -17.43 -0.21 0.55 16 8 C -0.28 -4.19 9.65 -39.77 -0.38 -4.57 16 9 C 0.31 4.49 6.23 -152.85 -0.95 3.54 16 10 N -0.63 -9.09 4.62 -11.80 -0.05 -9.14 16 11 C 0.51 8.89 7.84 -11.65 -0.09 8.80 16 12 O -0.48 -9.01 13.61 5.47 0.07 -8.94 16 13 C 0.50 9.66 7.87 -11.65 -0.09 9.56 16 14 O -0.54 -10.98 16.48 5.48 0.09 -10.89 16 15 N -0.64 -13.26 5.27 -60.77 -0.32 -13.58 16 16 C 0.16 3.47 4.75 -4.04 -0.02 3.45 16 17 C 0.03 0.78 2.00 -155.66 -0.31 0.47 16 18 C -0.50 -12.38 8.27 -34.44 -0.28 -12.67 16 19 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 20 C 0.08 1.90 5.13 -17.82 -0.09 1.81 16 21 N -0.87 -22.45 10.75 55.43 0.60 -21.85 16 22 Si 0.89 20.02 29.55 -169.99 -5.02 14.99 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.19 -4.01 9.96 -26.69 -0.27 -4.27 16 27 C -0.21 -4.20 9.92 -26.69 -0.26 -4.46 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 34 H 0.06 0.68 6.14 -51.93 -0.32 0.36 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.72 7.52 -51.93 -0.39 0.33 16 37 H 0.19 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.17 2.79 5.83 -52.49 -0.31 2.49 16 39 H 0.42 5.36 6.31 -40.82 -0.26 5.10 16 40 H 0.41 8.69 7.40 -40.82 -0.30 8.39 16 41 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 42 H 0.12 2.89 6.04 -51.93 -0.31 2.58 16 43 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 46 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -27.85 387.84 -8.14 -36.00 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -6.90 Total: 15.88 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.63 Total: 0.41 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.40 Total: -53.30 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.16 Total: -19.83 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.85 -8.14 -36.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430348805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.584 kcal (2) G-P(sol) polarization free energy of solvation -27.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds