Wall clock time and date at job start Tue Mar 31 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 C 1.52998 * 109.47255 * 120.00093 * 2 1 3 5 5 N 1.46501 * 109.47188 * 175.00070 * 4 2 1 6 6 N 1.40069 * 126.09942 * 269.95573 * 5 4 2 7 7 C 1.30842 * 108.42466 * 180.02562 * 6 5 4 8 8 C 1.39700 * 108.45986 * 359.76479 * 7 6 5 9 9 C 1.35855 * 126.09892 * 89.99911 * 5 4 2 10 10 N 1.39200 * 126.27099 * 359.94295 * 9 5 4 11 11 C 1.34780 * 120.00039 * 179.97438 * 10 9 5 12 12 O 1.21383 * 119.99647 * 359.97438 * 11 10 9 13 13 C 1.49307 * 119.99910 * 180.27563 * 11 10 9 14 14 O 1.21365 * 120.00279 * 354.75665 * 13 11 10 15 15 N 1.34771 * 119.99744 * 174.75400 * 13 11 10 16 16 C 1.46501 * 119.99975 * 185.77866 * 15 13 11 17 17 C 1.53004 * 109.47285 * 183.69557 * 16 15 13 18 18 C 1.50706 * 115.54814 * 306.41195 * 17 16 15 19 19 H 1.08002 * 119.99728 * 145.10867 * 18 17 16 20 20 C 1.37872 * 119.99886 * 325.11397 * 18 17 16 21 21 N 1.31513 * 120.00342 * 349.44230 * 20 18 17 22 22 Si 1.86811 * 119.99730 * 169.44129 * 20 18 17 23 23 H 1.48498 * 109.46738 * 59.99943 * 22 20 18 24 24 H 1.48495 * 109.46826 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46841 * 300.00138 * 22 20 18 26 26 C 1.53002 * 117.49895 * 160.74653 * 17 16 15 27 27 C 1.52998 * 117.49813 * 92.08490 * 17 16 15 28 28 H 1.09001 * 109.46851 * 299.99988 * 1 2 3 29 29 H 1.09002 * 109.46816 * 59.99516 * 1 2 3 30 30 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47267 * 240.00197 * 2 1 3 32 32 H 1.08992 * 109.47623 * 299.99925 * 3 2 1 33 33 H 1.09001 * 109.47343 * 60.00313 * 3 2 1 34 34 H 1.09005 * 109.47081 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47167 * 55.00150 * 4 2 1 36 36 H 1.09007 * 109.47057 * 295.00069 * 4 2 1 37 37 H 1.08005 * 125.77671 * 180.02562 * 7 6 5 38 38 H 1.07997 * 126.07372 * 180.24353 * 8 7 6 39 39 H 0.97001 * 120.00250 * 359.97438 * 10 9 5 40 40 H 0.96996 * 120.00488 * 5.77226 * 15 13 11 41 41 H 1.09003 * 109.47069 * 303.69605 * 16 15 13 42 42 H 1.09005 * 109.47316 * 63.69191 * 16 15 13 43 43 H 0.97003 * 119.99786 * 185.03256 * 21 20 18 44 44 H 1.09005 * 117.49623 * 359.97438 * 26 17 16 45 45 H 1.09000 * 117.49723 * 145.01605 * 26 17 16 46 46 H 1.08996 * 117.49344 * 214.97714 * 27 17 16 47 47 H 1.08996 * 117.49915 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 7 4.2296 -1.8788 0.6230 7 6 5.5047 -1.6199 0.7611 8 6 5.6385 -0.3929 1.4156 9 6 4.3880 0.0792 1.6776 10 7 4.0768 1.2738 2.3209 11 6 5.0639 2.0818 2.7561 12 8 6.2241 1.7676 2.5874 13 6 4.7301 3.3601 3.4516 14 8 3.5740 3.7184 3.5411 15 7 5.7127 4.1162 3.9799 16 6 5.3786 5.3032 4.7709 17 6 6.6653 6.0275 5.1721 18 6 7.6971 5.1803 5.8712 19 1 8.7484 5.3605 5.7020 20 6 7.2989 4.1751 6.7267 21 7 6.0397 4.0857 7.0955 22 14 8.5481 2.9398 7.3620 23 1 9.6100 3.6531 8.1161 24 1 7.8718 1.9687 8.2590 25 1 9.1555 2.2163 6.2162 26 6 6.5480 7.4925 5.5977 27 6 7.1707 7.1352 4.2456 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6055 -1.7197 1.2951 36 1 1.7517 -0.1583 2.1370 37 1 6.3166 -2.2465 0.4224 38 1 6.5683 0.0935 1.6709 39 1 3.1496 1.5247 2.4561 40 1 6.6410 3.8745 3.8366 41 1 4.7553 5.9719 4.1772 42 1 4.8367 5.0018 5.6674 43 1 5.7727 3.4247 7.7534 44 1 5.5543 7.9404 5.5914 45 1 7.2175 7.8435 6.3830 46 1 8.2495 7.2514 4.1421 47 1 6.5868 7.3477 3.3501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430348805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:40 Heat of formation + Delta-G solvation = 19.783512 kcal Electronic energy + Delta-G solvation = -29377.766091 eV Core-core repulsion = 25369.888897 eV Total energy + Delta-G solvation = -4007.877195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.79846 -41.45008 -39.73710 -38.48317 -37.57566 -36.37607 -34.83578 -34.14879 -32.80762 -30.47695 -28.50116 -28.21067 -27.49993 -27.28291 -25.42901 -23.02408 -22.88004 -22.13828 -21.27581 -21.03016 -20.88595 -19.82686 -18.76580 -17.91737 -17.77795 -17.35897 -16.73611 -16.53933 -16.35889 -16.09831 -16.01343 -15.59921 -15.23592 -14.88988 -14.87489 -14.46262 -14.43706 -14.19819 -13.88625 -13.64091 -13.43627 -13.19610 -13.00335 -12.87170 -12.73634 -12.68133 -12.54412 -12.32274 -12.16887 -12.04332 -11.96786 -11.84800 -11.67783 -11.42905 -11.09826 -10.77767 -10.64651 -10.19781 -10.01040 -9.86633 -9.29294 -8.06784 -6.20043 -0.01360 0.71774 0.94791 1.41552 1.47250 1.50884 1.65723 1.80656 2.15226 2.39823 2.52045 3.00359 3.37598 3.44317 3.67389 3.68184 3.91078 3.93878 4.14367 4.22138 4.31683 4.44510 4.50838 4.52165 4.54991 4.70439 4.70998 4.74621 4.76339 4.80978 4.94670 4.99159 5.00512 5.06462 5.11264 5.23799 5.27716 5.34854 5.42396 5.53832 5.59921 5.65213 5.73987 5.89199 5.89984 6.34725 6.35950 6.59224 6.66307 6.81403 6.97324 7.42978 8.87968 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003290 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.123234 B = 8508.162379 C = 9599.474326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.158 4.158 4 C 0.122 3.878 5 N -0.379 5.379 6 N -0.302 5.302 7 C 0.063 3.937 8 C -0.300 4.300 9 C 0.299 3.701 10 N -0.612 5.612 11 C 0.520 3.480 12 O -0.499 6.499 13 C 0.504 3.496 14 O -0.553 6.553 15 N -0.648 5.648 16 C 0.170 3.830 17 C 0.006 3.994 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.044 3.956 21 N -0.891 5.891 22 Si 0.936 3.064 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.272 1.272 26 C -0.190 4.190 27 C -0.188 4.188 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.217 0.783 38 H 0.159 0.841 39 H 0.428 0.572 40 H 0.412 0.588 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.261 0.739 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -8.344 -12.810 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.215 4.215 4 C 0.002 3.998 5 N -0.167 5.167 6 N -0.124 5.124 7 C -0.123 4.123 8 C -0.331 4.331 9 C 0.079 3.921 10 N -0.262 5.262 11 C 0.302 3.698 12 O -0.370 6.370 13 C 0.283 3.717 14 O -0.433 6.433 15 N -0.296 5.296 16 C 0.047 3.953 17 C 0.005 3.995 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.159 4.159 21 N -0.528 5.528 22 Si 0.762 3.238 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.197 1.197 26 C -0.229 4.229 27 C -0.225 4.225 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.177 0.823 39 H 0.268 0.732 40 H 0.249 0.751 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.400 -9.200 -13.144 19.120 hybrid contribution 1.358 0.187 1.061 1.734 sum -9.042 -9.013 -12.083 17.578 Atomic orbital electron populations 1.21758 0.91700 1.03145 1.03227 1.21481 0.97955 0.95721 0.97197 1.22000 0.99986 0.96338 1.03202 1.22209 0.73078 1.04450 1.00051 1.49023 1.06505 1.14538 1.46632 1.77362 1.05369 1.08377 1.21336 1.24194 0.94810 0.95954 0.97310 1.21775 0.96731 1.00541 1.14060 1.18100 0.91314 0.85351 0.97373 1.42365 1.11707 1.17181 1.54975 1.20298 0.85091 0.85131 0.79322 1.90716 1.19738 1.73059 1.53527 1.19561 0.86093 0.84734 0.81327 1.90695 1.19644 1.72529 1.60465 1.45660 1.09797 1.26084 1.48050 1.20991 0.96514 0.83888 0.93899 1.19204 0.94373 0.87405 0.98531 1.20685 0.92096 1.15086 1.26780 0.92460 1.25426 0.96302 0.98151 0.95996 1.69927 1.16653 1.35507 1.30699 0.85949 0.79894 0.79539 0.78404 1.19824 1.21581 1.19708 1.22937 1.00578 1.01813 0.97553 1.22992 0.99847 1.06583 0.93121 0.91465 0.91399 0.91145 0.91096 0.91091 0.91837 0.94831 0.86704 0.88213 0.76665 0.82331 0.73225 0.75099 0.93681 0.89450 0.92971 0.90044 0.90620 0.89990 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 71.98 0.66 -0.78 16 2 C -0.10 -1.57 3.13 -10.79 -0.03 -1.60 16 3 C -0.16 -2.83 8.09 71.98 0.58 -2.25 16 4 C 0.12 2.06 5.70 86.38 0.49 2.55 16 5 N -0.38 -9.16 3.46 -344.67 -1.19 -10.36 16 6 N -0.30 -7.80 12.56 -57.13 -0.72 -8.52 16 7 C 0.06 1.54 12.00 85.19 1.02 2.56 16 8 C -0.30 -8.84 9.65 22.15 0.21 -8.62 16 9 C 0.30 8.44 6.23 131.25 0.82 9.26 16 10 N -0.61 -17.42 4.62 -309.59 -1.43 -18.85 16 11 C 0.52 17.98 7.84 87.22 0.68 18.66 16 12 O -0.50 -18.84 13.61 -3.35 -0.05 -18.88 16 13 C 0.50 19.37 7.87 87.23 0.69 20.06 16 14 O -0.55 -22.15 16.48 -3.29 -0.05 -22.20 16 15 N -0.65 -26.81 5.27 -464.54 -2.45 -29.26 16 16 C 0.17 7.46 4.75 86.38 0.41 7.87 16 17 C 0.01 0.25 2.00 -52.92 -0.11 0.14 16 18 C -0.51 -25.17 8.27 25.60 0.21 -24.96 16 19 H 0.06 2.85 7.84 -2.91 -0.02 2.82 16 20 C 0.04 2.18 5.13 84.65 0.43 2.62 16 21 N -0.89 -46.33 10.75 21.45 0.23 -46.10 16 22 Si 0.94 41.19 29.55 68.60 2.03 43.22 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.19 -7.71 9.96 30.62 0.30 -7.40 16 27 C -0.19 -7.17 9.92 30.62 0.30 -6.86 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.09 7.56 -2.39 -0.02 1.07 16 34 H 0.03 0.76 6.14 -2.38 -0.01 0.75 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.44 7.52 -2.38 -0.02 1.42 16 37 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.16 5.18 5.83 -2.91 -0.02 5.16 16 39 H 0.43 10.58 6.31 -92.71 -0.58 9.99 16 40 H 0.41 17.44 7.40 -92.71 -0.69 16.75 16 41 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 42 H 0.09 4.39 6.04 -2.38 -0.01 4.38 16 43 H 0.26 13.34 8.32 -92.71 -0.77 12.57 16 44 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 47 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -58.75 387.84 2.79 -55.95 By element: Atomic # 1 Polarization: 44.04 SS G_CDS: -0.26 Total: 43.77 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.69 Total: 11.23 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.56 Total: -113.09 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.10 Total: -41.09 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -58.75 2.79 -55.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430348805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.735 kcal (2) G-P(sol) polarization free energy of solvation -58.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds