Wall clock time and date at job start Tue Mar 31 2020 19:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.39670 * 119.99817 * 180.02562 * 6 5 3 8 8 C 1.38908 * 120.07844 * 359.71773 * 7 6 5 9 9 C 1.38104 * 119.92732 * 179.77264 * 8 7 6 10 10 C 1.38281 * 120.07326 * 0.50605 * 9 8 7 11 11 C 1.38285 * 120.15262 * 359.75235 * 10 9 8 12 12 C 1.38104 * 120.06986 * 359.97438 * 11 10 9 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 3 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 3 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99626 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00072 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00087 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00028 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99464 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00303 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46807 * 60.00203 * 25 23 21 27 27 H 1.48498 * 109.47276 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47057 * 300.00094 * 25 23 21 29 29 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 31 31 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08008 * 120.03417 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.96271 * 180.25621 * 9 8 7 39 39 H 1.08000 * 119.92436 * 179.71959 * 10 9 8 40 40 H 1.07997 * 119.96437 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.03499 * 179.97438 * 12 11 10 42 42 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 43 43 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 44 44 H 1.09000 * 109.47602 * 299.99940 * 17 16 14 45 45 H 1.09006 * 109.46868 * 59.99976 * 17 16 14 46 46 H 0.97002 * 120.00040 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00017 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.4337 3.0718 0.0888 8 6 6.3255 2.0260 0.2906 9 6 7.6806 2.2812 0.3672 10 6 8.1492 3.5772 0.2539 11 6 7.2638 4.6214 0.0584 12 6 5.9079 4.3725 -0.0248 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3435 2.6274 -0.4338 16 7 0.0744 3.2572 -2.5224 17 6 -1.2508 3.8686 -2.6495 18 6 -1.3995 4.4640 -4.0259 19 8 -0.4882 4.3849 -4.8225 20 7 -2.5453 5.0834 -4.3720 21 6 -2.6804 5.6255 -5.6240 22 1 -1.8687 5.5558 -6.3331 23 6 -3.8619 6.2636 -5.9811 24 7 -4.8496 6.3479 -5.1185 25 14 -4.0462 7.0016 -7.6872 26 1 -3.8927 5.9337 -8.7076 27 1 -5.3897 7.6208 -7.8162 28 1 -3.0024 8.0375 -7.8938 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 5.9598 1.0140 0.3832 38 1 8.3748 1.4681 0.5199 39 1 9.2090 3.7746 0.3188 40 1 7.6331 5.6324 -0.0293 41 1 5.2169 5.1885 -0.1771 42 1 2.2719 2.1231 -1.9978 43 1 0.6941 3.2831 -3.2682 44 1 -2.0176 3.1090 -2.4971 45 1 -1.3624 4.6529 -1.9007 46 1 -3.2742 5.1463 -3.7351 47 1 -5.6744 6.7937 -5.3676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458765819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:01 Heat of formation + Delta-G solvation = -45.100685 kcal Electronic energy + Delta-G solvation = -27786.578845 eV Core-core repulsion = 23775.888060 eV Total energy + Delta-G solvation = -4010.690784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.32244 -39.49353 -38.35993 -37.03805 -34.81794 -34.35919 -33.70280 -32.21270 -31.37160 -31.11822 -30.17052 -27.89186 -27.08045 -24.54622 -23.87449 -22.68402 -21.46822 -21.37541 -20.61344 -19.61237 -18.53310 -18.02256 -17.63028 -16.79068 -16.23813 -15.94628 -15.64584 -15.45581 -15.06729 -14.62895 -14.45332 -14.30662 -14.21358 -14.05712 -13.92622 -13.59530 -13.49290 -13.28750 -13.21498 -12.82551 -12.32450 -12.19978 -11.90436 -11.72463 -11.64415 -11.52709 -11.26228 -11.13693 -11.11745 -10.93576 -10.51990 -10.36479 -10.32763 -10.00989 -9.63993 -9.14997 -9.11384 -8.66695 -8.64384 -8.11490 -7.64336 -6.52666 -3.94799 1.25098 1.43503 2.70865 3.12417 3.13309 3.20612 3.24539 3.35684 3.72503 3.73533 4.07350 4.29366 4.39375 4.68872 4.78263 4.79389 4.87822 4.90297 5.02662 5.10443 5.15894 5.17413 5.28080 5.31599 5.37979 5.54942 5.59712 5.74921 5.82558 5.88391 5.90563 5.97652 6.06093 6.07817 6.10163 6.29895 6.41891 6.45553 6.47202 6.64639 6.73048 7.03332 7.11304 7.44513 7.46163 7.90737 8.18476 8.43669 8.75192 9.03249 9.37942 9.85847 10.64086 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002144 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.214466 B =13057.886209 C =14748.081014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.155 3.845 4 H 0.095 0.905 5 C 0.118 3.882 6 N -0.746 5.746 7 C 0.218 3.782 8 C -0.200 4.200 9 C -0.074 4.074 10 C -0.184 4.184 11 C -0.072 4.072 12 C -0.195 4.195 13 N -0.745 5.745 14 C 0.705 3.295 15 O -0.591 6.591 16 N -0.724 5.724 17 C 0.130 3.870 18 C 0.427 3.573 19 O -0.598 6.598 20 N -0.549 5.549 21 C -0.306 4.306 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.934 3.066 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.397 0.603 43 H 0.406 0.594 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.138 -10.071 12.991 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.049 3.951 4 H 0.113 0.887 5 C -0.007 4.007 6 N -0.376 5.376 7 C 0.114 3.886 8 C -0.223 4.223 9 C -0.093 4.093 10 C -0.204 4.204 11 C -0.091 4.091 12 C -0.218 4.218 13 N -0.402 5.402 14 C 0.404 3.596 15 O -0.469 6.469 16 N -0.382 5.382 17 C 0.001 3.999 18 C 0.213 3.787 19 O -0.485 6.485 20 N -0.183 5.183 21 C -0.435 4.435 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.761 3.239 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.231 0.769 43 H 0.243 0.757 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.717 -10.239 13.310 25.146 hybrid contribution -0.338 0.719 -1.232 1.466 sum 18.379 -9.520 12.078 23.965 Atomic orbital electron populations 1.21768 0.94145 1.00435 1.03688 1.21907 0.97844 0.95156 1.02145 1.21063 0.92362 0.94144 0.87519 0.88693 1.21660 0.92935 0.84251 1.01892 1.44671 1.03843 1.08271 1.80816 1.17838 0.83895 0.93492 0.93332 1.20627 0.93182 0.97924 1.10547 1.20881 0.94718 0.96666 0.97014 1.20892 0.99397 0.92969 1.07122 1.20888 0.92603 0.98909 0.96705 1.20647 0.96212 0.94926 1.09994 1.45123 1.16174 1.61919 1.16952 1.15818 0.82035 0.78417 0.83285 1.90926 1.51789 1.65169 1.39039 1.44803 1.18173 1.60154 1.15029 1.20770 0.84111 0.98050 0.96957 1.19771 0.84743 0.85293 0.88884 1.90494 1.40875 1.64324 1.52807 1.41782 1.13596 1.48114 1.14842 1.19671 1.01190 1.32304 0.90339 0.87760 1.25328 0.95078 0.97393 0.99926 1.69605 1.05350 1.42989 1.35499 0.85869 0.77419 0.79252 0.81407 1.19778 1.20849 1.19780 0.93762 0.92079 0.91926 0.91714 0.91152 0.90795 0.91646 0.76086 0.86319 0.86423 0.86669 0.86291 0.86284 0.76898 0.75657 0.90073 0.90077 0.77025 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.51 37.15 0.32 -1.31 16 2 C -0.13 -1.11 5.61 -26.74 -0.15 -1.26 16 3 C 0.16 1.37 2.42 -67.93 -0.16 1.20 16 4 H 0.10 1.02 7.58 -51.93 -0.39 0.62 16 5 C 0.12 0.83 4.47 -4.04 -0.02 0.81 16 6 N -0.75 -6.31 5.56 -58.63 -0.33 -6.63 16 7 C 0.22 2.07 6.65 -83.79 -0.56 1.51 16 8 C -0.20 -1.76 9.31 -39.38 -0.37 -2.12 16 9 C -0.07 -0.62 10.04 -39.61 -0.40 -1.01 16 10 C -0.18 -1.56 10.04 -39.55 -0.40 -1.96 16 11 C -0.07 -0.65 10.04 -39.61 -0.40 -1.04 16 12 C -0.20 -1.88 9.90 -39.38 -0.39 -2.27 16 13 N -0.74 -7.76 4.48 -58.68 -0.26 -8.02 16 14 C 0.70 10.26 7.12 -86.92 -0.62 9.64 16 15 O -0.59 -10.21 13.46 5.28 0.07 -10.14 16 16 N -0.72 -11.49 5.53 -66.41 -0.37 -11.86 16 17 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 18 C 0.43 9.66 7.85 -10.98 -0.09 9.58 16 19 O -0.60 -15.12 15.24 5.55 0.08 -15.03 16 20 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 21 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.89 -23.76 13.05 55.50 0.72 -23.03 16 25 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 31 H 0.06 0.88 5.63 -51.93 -0.29 0.59 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 35 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 36 H 0.40 3.66 8.15 -40.82 -0.33 3.32 16 37 H 0.12 0.87 6.74 -52.48 -0.35 0.51 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.40 3.61 8.62 -40.82 -0.35 3.26 16 43 H 0.41 6.40 7.45 -40.82 -0.30 6.10 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -30.88 390.99 -9.66 -40.55 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -6.90 Total: 20.15 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -3.50 Total: 6.23 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.29 Total: -63.09 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.16 Total: -25.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.88 -9.66 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458765819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.552 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds