Wall clock time and date at job start Tue Mar 31 2020 19:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.39670 * 119.99817 * 180.02562 * 6 5 3 8 8 C 1.38908 * 120.07844 * 359.71773 * 7 6 5 9 9 C 1.38104 * 119.92732 * 179.77264 * 8 7 6 10 10 C 1.38281 * 120.07326 * 0.50605 * 9 8 7 11 11 C 1.38285 * 120.15262 * 359.75235 * 10 9 8 12 12 C 1.38104 * 120.06986 * 359.97438 * 11 10 9 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 3 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 3 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99626 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00072 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00087 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00028 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99464 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00303 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46807 * 60.00203 * 25 23 21 27 27 H 1.48498 * 109.47276 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47057 * 300.00094 * 25 23 21 29 29 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 31 31 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08008 * 120.03417 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.96271 * 180.25621 * 9 8 7 39 39 H 1.08000 * 119.92436 * 179.71959 * 10 9 8 40 40 H 1.07997 * 119.96437 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.03499 * 179.97438 * 12 11 10 42 42 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 43 43 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 44 44 H 1.09000 * 109.47602 * 299.99940 * 17 16 14 45 45 H 1.09006 * 109.46868 * 59.99976 * 17 16 14 46 46 H 0.97002 * 120.00040 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00017 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.4337 3.0718 0.0888 8 6 6.3255 2.0260 0.2906 9 6 7.6806 2.2812 0.3672 10 6 8.1492 3.5772 0.2539 11 6 7.2638 4.6214 0.0584 12 6 5.9079 4.3725 -0.0248 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3435 2.6274 -0.4338 16 7 0.0744 3.2572 -2.5224 17 6 -1.2508 3.8686 -2.6495 18 6 -1.3995 4.4640 -4.0259 19 8 -0.4882 4.3849 -4.8225 20 7 -2.5453 5.0834 -4.3720 21 6 -2.6804 5.6255 -5.6240 22 1 -1.8687 5.5558 -6.3331 23 6 -3.8619 6.2636 -5.9811 24 7 -4.8496 6.3479 -5.1185 25 14 -4.0462 7.0016 -7.6872 26 1 -3.8927 5.9337 -8.7076 27 1 -5.3897 7.6208 -7.8162 28 1 -3.0024 8.0375 -7.8938 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 5.9598 1.0140 0.3832 38 1 8.3748 1.4681 0.5199 39 1 9.2090 3.7746 0.3188 40 1 7.6331 5.6324 -0.0293 41 1 5.2169 5.1885 -0.1771 42 1 2.2719 2.1231 -1.9978 43 1 0.6941 3.2831 -3.2682 44 1 -2.0176 3.1090 -2.4971 45 1 -1.3624 4.6529 -1.9007 46 1 -3.2742 5.1463 -3.7351 47 1 -5.6744 6.7937 -5.3676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458765819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:00 Heat of formation + Delta-G solvation = -67.022701 kcal Electronic energy + Delta-G solvation = -27787.529455 eV Core-core repulsion = 23775.888060 eV Total energy + Delta-G solvation = -4011.641394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.42530 -40.31438 -39.99565 -37.95294 -36.23168 -35.51667 -35.18679 -33.43614 -33.10191 -31.75201 -30.89323 -29.15779 -28.10878 -26.34164 -24.63528 -23.35814 -22.42459 -22.08185 -21.57166 -21.32962 -20.13338 -19.59685 -18.36212 -17.70345 -17.40736 -17.03257 -16.88239 -16.58836 -16.35797 -16.19360 -15.85962 -15.47713 -15.17248 -15.01142 -14.85558 -14.70864 -14.34493 -14.20074 -14.00130 -13.93343 -13.57788 -13.54247 -13.47267 -12.98913 -12.88595 -12.51063 -12.47370 -12.24082 -12.14300 -12.01049 -11.79311 -11.71656 -11.56541 -11.27418 -10.95357 -10.55573 -10.27581 -10.10372 -9.81708 -9.76319 -8.51238 -8.28581 -6.01484 0.60149 0.78400 1.37654 1.41848 1.52108 1.62386 1.90182 2.17233 2.28105 2.48950 3.05247 3.07856 3.15952 3.34546 3.61276 4.04357 4.11056 4.16526 4.19455 4.21713 4.41941 4.44150 4.45780 4.47105 4.55007 4.63578 4.68517 4.74185 4.86104 4.90214 5.02398 5.08564 5.21282 5.21868 5.32227 5.38217 5.45532 5.53905 5.58887 5.67310 5.81785 5.91101 5.97110 6.02914 6.47898 6.48409 6.76455 7.03184 7.05020 7.43157 7.59222 7.94506 8.65353 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.002144 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.214466 B =13057.886209 C =14748.081014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.158 3.842 4 H 0.077 0.923 5 C 0.126 3.874 6 N -0.748 5.748 7 C 0.206 3.794 8 C -0.208 4.208 9 C -0.079 4.079 10 C -0.194 4.194 11 C -0.083 4.083 12 C -0.216 4.216 13 N -0.728 5.728 14 C 0.706 3.294 15 O -0.618 6.618 16 N -0.727 5.727 17 C 0.145 3.855 18 C 0.433 3.567 19 O -0.625 6.625 20 N -0.560 5.560 21 C -0.337 4.337 22 H 0.086 0.914 23 C -0.011 4.011 24 N -0.916 5.916 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.398 0.602 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.406 0.594 43 H 0.408 0.592 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.543 -11.198 13.268 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.053 3.947 4 H 0.095 0.905 5 C 0.001 3.999 6 N -0.378 5.378 7 C 0.103 3.897 8 C -0.230 4.230 9 C -0.098 4.098 10 C -0.214 4.214 11 C -0.102 4.102 12 C -0.239 4.239 13 N -0.384 5.384 14 C 0.406 3.594 15 O -0.499 6.499 16 N -0.384 5.384 17 C 0.016 3.984 18 C 0.220 3.780 19 O -0.513 6.513 20 N -0.195 5.195 21 C -0.467 4.467 22 H 0.104 0.896 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.242 0.758 43 H 0.245 0.755 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.158 -11.397 13.610 26.860 hybrid contribution -0.708 1.025 -1.249 1.764 sum 19.450 -10.372 12.361 25.272 Atomic orbital electron populations 1.21706 0.96428 1.00347 1.01325 1.21884 0.95581 0.94942 1.04022 1.21145 0.93653 0.94065 0.85843 0.90518 1.21681 0.91119 0.83797 1.03288 1.44706 1.03514 1.08655 1.80888 1.17995 0.84345 0.93712 0.93688 1.20874 0.93354 0.98463 1.10333 1.21213 0.95077 0.97267 0.96242 1.21180 1.00260 0.93085 1.06839 1.21132 0.92547 0.99880 0.96646 1.20802 0.96721 0.95297 1.11084 1.45034 1.14705 1.60739 1.17926 1.15877 0.82898 0.78269 0.82345 1.90913 1.52971 1.66202 1.39766 1.44727 1.17386 1.60639 1.15678 1.20529 0.85668 0.98356 0.93850 1.20468 0.83575 0.83833 0.90147 1.90470 1.41603 1.64942 1.54257 1.41835 1.14369 1.48847 1.14457 1.19686 1.01467 1.34225 0.91284 0.89618 1.26133 0.94368 0.97203 1.03507 1.69673 1.05679 1.43224 1.36982 0.84931 0.77750 0.78420 0.76909 1.19485 1.19638 1.19511 0.92705 0.93798 0.94864 0.90517 0.88508 0.89173 0.90233 0.76697 0.84709 0.84292 0.85077 0.85154 0.86579 0.75796 0.75522 0.89259 0.89202 0.76724 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 71.98 0.61 -2.48 16 2 C -0.13 -1.83 5.61 30.59 0.17 -1.66 16 3 C 0.16 2.53 2.42 44.99 0.11 2.64 16 4 H 0.08 1.58 7.58 -2.39 -0.02 1.56 16 5 C 0.13 1.45 4.47 86.38 0.39 1.84 16 6 N -0.75 -11.66 5.56 -339.41 -1.89 -13.54 16 7 C 0.21 3.67 6.65 38.21 0.25 3.92 16 8 C -0.21 -3.21 9.31 22.40 0.21 -3.00 16 9 C -0.08 -1.16 10.04 22.25 0.22 -0.93 16 10 C -0.19 -3.00 10.04 22.29 0.22 -2.78 16 11 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 12 C -0.22 -4.11 9.90 22.40 0.22 -3.89 16 13 N -0.73 -14.41 4.48 -457.81 -2.05 -16.46 16 14 C 0.71 20.33 7.12 179.05 1.28 21.60 16 15 O -0.62 -21.41 13.46 -4.01 -0.05 -21.46 16 16 N -0.73 -22.92 5.53 -482.28 -2.67 -25.59 16 17 C 0.14 5.22 6.15 85.63 0.53 5.75 16 18 C 0.43 19.82 7.85 87.66 0.69 20.51 16 19 O -0.62 -32.02 15.24 -3.07 -0.05 -32.07 16 20 N -0.56 -28.03 5.29 -306.98 -1.62 -29.65 16 21 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 22 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 24 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 25 Si 1.00 41.73 29.55 68.60 2.03 43.75 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.04 1.09 7.84 -2.38 -0.02 1.07 16 31 H 0.03 0.92 5.63 -2.39 -0.01 0.90 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.82 7.94 -2.39 -0.02 0.80 16 35 H 0.08 0.75 7.96 -2.39 -0.02 0.74 16 36 H 0.40 6.98 8.15 -92.71 -0.76 6.22 16 37 H 0.14 1.55 6.74 -2.91 -0.02 1.53 16 38 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.41 6.80 8.62 -92.71 -0.80 6.00 16 43 H 0.41 12.77 7.45 -92.71 -0.69 12.08 16 44 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 46 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 47 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.95 390.99 -1.56 -68.51 By element: Atomic # 1 Polarization: 54.35 SS G_CDS: -1.95 Total: 52.41 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.41 Total: 22.45 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -7.95 Total: -133.59 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.10 Total: -53.53 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -66.95 -1.56 -68.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458765819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.485 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds