Wall clock time and date at job start Tue Mar 31 2020 18:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47443 * 2 1 4 4 H 1.09003 * 109.87142 * 304.56472 * 3 2 1 5 5 C 1.54324 * 109.88329 * 65.57449 * 3 2 1 6 6 C 1.55160 * 102.93854 * 141.61325 * 5 3 2 7 7 C 1.54913 * 101.58263 * 324.49840 * 6 5 3 8 8 N 1.47021 * 109.88408 * 183.38767 * 3 2 1 9 9 C 1.34780 * 125.64847 * 61.62301 * 8 3 2 10 10 O 1.21369 * 119.99903 * 5.30392 * 9 8 3 11 11 C 1.49303 * 119.99830 * 185.30521 * 9 8 3 12 12 O 1.21384 * 119.99971 * 0.02562 * 11 9 8 13 13 N 1.34782 * 119.99762 * 179.97438 * 11 9 8 14 14 C 1.39200 * 119.99623 * 179.97438 * 13 11 9 15 15 C 1.36210 * 126.27412 * 0.03363 * 14 13 11 16 16 C 1.39690 * 107.85930 * 179.97438 * 15 14 13 17 17 C 1.50696 * 125.77018 * 179.97438 * 16 15 14 18 18 N 1.30850 * 108.46140 * 359.97438 * 16 15 14 19 19 N 1.35853 * 126.26566 * 179.71517 * 14 13 11 20 20 C 1.46496 * 126.10177 * 0.04309 * 19 14 13 21 21 C 1.50694 * 109.47350 * 89.99701 * 20 19 14 22 22 H 1.07992 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99977 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00236 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47390 * 89.99814 * 25 23 21 27 27 H 1.48497 * 109.47083 * 210.00075 * 25 23 21 28 28 H 1.48506 * 109.46586 * 329.99938 * 25 23 21 29 29 H 1.09002 * 109.46777 * 294.98716 * 1 2 3 30 30 H 1.09006 * 109.46901 * 174.98792 * 1 2 3 31 31 H 1.08996 * 109.47155 * 54.98223 * 1 2 3 32 32 H 1.09007 * 109.47266 * 119.99834 * 2 1 3 33 33 H 1.08998 * 109.47217 * 239.99581 * 2 1 3 34 34 H 1.08995 * 110.72601 * 259.98049 * 5 3 2 35 35 H 1.09001 * 110.71924 * 23.25287 * 5 3 2 36 36 H 1.08997 * 111.00102 * 82.58002 * 6 5 3 37 37 H 1.09005 * 111.00104 * 206.42829 * 6 5 3 38 38 H 1.09000 * 110.36254 * 155.84803 * 7 6 5 39 39 H 1.08999 * 110.36628 * 278.06448 * 7 6 5 40 40 H 0.96997 * 119.99990 * 0.02562 * 13 11 9 41 41 H 1.08003 * 126.07088 * 359.97438 * 15 14 13 42 42 H 1.09002 * 109.47492 * 89.99776 * 17 16 15 43 43 H 1.09001 * 109.47097 * 209.99882 * 17 16 15 44 44 H 1.09004 * 109.47411 * 329.99827 * 17 16 15 45 45 H 1.09004 * 109.47106 * 210.00081 * 20 19 14 46 46 H 1.09007 * 109.47029 * 329.99380 * 20 19 14 47 47 H 0.96997 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6153 1.9857 -0.8442 5 6 1.6493 2.1374 1.3214 6 6 2.8962 3.0041 1.6401 7 6 4.0441 2.0964 1.1320 8 7 3.5080 1.4538 -0.0817 9 6 4.2420 0.9584 -1.0978 10 8 3.6922 0.5359 -2.0939 11 6 5.7314 0.9294 -0.9978 12 8 6.2812 1.3514 -0.0013 13 7 6.4654 0.4335 -2.0137 14 6 7.8540 0.4069 -1.9207 15 6 8.5998 0.8453 -0.8686 16 6 9.9453 0.6371 -1.1810 17 6 11.1177 0.9785 -0.2978 18 7 10.0156 0.0955 -2.3701 19 7 8.7134 -0.0666 -2.8603 20 6 8.3444 -0.6414 -4.1563 21 6 8.2829 0.4520 -5.1915 22 1 8.4968 1.4729 -4.9119 23 6 7.9524 0.1491 -6.4953 24 7 7.6913 -1.0942 -6.8357 25 14 7.8769 1.5042 -7.7788 26 1 9.2100 1.6590 -8.4144 27 1 6.8730 1.1500 -8.8141 28 1 7.4875 2.7811 -7.1280 29 1 -0.3633 0.4341 0.9315 30 1 -0.3633 -1.0238 -0.0898 31 1 -0.3633 0.5897 -0.8416 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.7690 2.7647 1.1816 35 1 1.4793 1.4023 2.1080 36 1 2.8691 3.9447 1.0900 37 1 2.9844 3.1825 2.7118 38 1 4.9216 2.6952 0.8881 39 1 4.2942 1.3457 1.8817 40 1 6.0260 0.0959 -2.8098 41 1 8.2185 1.2772 0.0450 42 1 11.3539 0.1255 0.3384 43 1 11.9813 1.2197 -0.9176 44 1 10.8659 1.8372 0.3245 45 1 9.0896 -1.3800 -4.4517 46 1 7.3690 -1.1214 -4.0763 47 1 7.4585 -1.3072 -7.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532607856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:28 Heat of formation + Delta-G solvation = 8.454120 kcal Electronic energy + Delta-G solvation = -29227.977386 eV Core-core repulsion = 25219.608913 eV Total energy + Delta-G solvation = -4008.368474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25061 -40.41861 -38.90532 -37.70852 -34.94869 -33.87011 -33.64076 -32.08975 -31.81003 -29.27268 -28.54343 -28.11587 -26.07505 -25.68104 -23.65949 -22.84168 -22.38851 -21.34883 -20.19240 -19.75202 -18.99792 -17.52685 -17.11169 -16.81686 -16.36686 -16.35381 -15.61223 -15.19153 -14.87571 -14.64732 -14.34165 -14.16403 -14.00652 -13.77772 -13.59968 -13.30294 -12.95202 -12.78976 -12.64490 -12.55180 -12.39756 -12.07696 -11.93508 -11.85745 -11.73048 -11.52486 -11.49225 -11.23237 -11.06371 -11.01347 -10.85898 -10.73712 -10.51455 -10.31214 -9.82426 -9.80023 -9.40151 -8.94329 -8.68372 -7.96582 -7.55371 -6.29909 -4.38515 1.26860 2.04901 2.63669 3.13978 3.20865 3.24067 3.27078 3.31907 3.56419 3.72537 4.16690 4.25492 4.28143 4.42709 4.50453 4.82452 4.90551 4.99474 5.03590 5.09973 5.21349 5.30266 5.37815 5.43452 5.54069 5.57097 5.62876 5.67512 5.78252 5.84817 5.87387 5.97591 5.98873 6.07596 6.09457 6.14078 6.18155 6.31362 6.54045 6.83360 7.00875 7.05413 7.34651 7.46760 7.53664 7.64902 7.81641 7.85318 8.10248 8.57198 8.70056 9.29087 10.77541 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003566 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.020681 B = 7850.266229 C = 9776.077181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.082 0.918 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.099 3.901 8 N -0.589 5.589 9 C 0.529 3.471 10 O -0.508 6.508 11 C 0.514 3.486 12 O -0.494 6.494 13 N -0.608 5.608 14 C 0.295 3.705 15 C -0.288 4.288 16 C 0.049 3.951 17 C -0.062 4.062 18 N -0.278 5.278 19 N -0.341 5.341 20 C 0.255 3.745 21 C -0.542 4.542 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.907 3.093 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.428 0.572 41 H 0.163 0.837 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.122 5.499 18.635 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.034 3.966 4 H 0.100 0.900 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.023 4.023 8 N -0.324 5.324 9 C 0.311 3.689 10 O -0.383 6.383 11 C 0.295 3.705 12 O -0.368 6.368 13 N -0.256 5.256 14 C 0.073 3.927 15 C -0.319 4.319 16 C -0.115 4.115 17 C -0.121 4.121 18 N -0.103 5.103 19 N -0.127 5.127 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.734 3.266 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.267 0.733 41 H 0.180 0.820 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.354 4.894 17.520 21.444 hybrid contribution -0.894 0.674 -0.838 1.399 sum -12.248 5.569 16.682 21.432 Atomic orbital electron populations 1.21703 0.94805 1.02092 1.01827 1.21916 0.96480 0.95892 1.03350 1.21783 0.78897 0.97078 0.98873 0.90001 1.22747 0.98470 0.99099 0.96144 1.22871 0.94151 0.98430 1.02080 1.22613 0.97560 0.96159 0.85968 1.48262 1.07041 1.57466 1.19641 1.19459 0.87152 0.79472 0.82799 1.90822 1.72629 1.45754 1.29063 1.19825 0.87886 0.79487 0.83291 1.90658 1.72166 1.44220 1.29753 1.42303 1.03549 1.58948 1.20754 1.17968 0.80885 1.01417 0.92466 1.21265 0.91360 1.17381 1.01935 1.22015 0.95191 1.00467 0.93868 1.20026 0.93810 1.01287 0.96969 1.77368 0.98138 1.23360 1.11468 1.49590 1.01558 1.46433 1.15095 1.19689 0.96996 0.94900 0.74659 1.21314 1.49281 0.94217 0.93271 0.91679 1.24932 0.94303 0.96108 0.98270 1.69912 1.45544 1.17661 1.19478 0.86338 0.78117 0.81556 0.80604 1.20211 1.20793 1.19679 0.92589 0.92382 0.92450 0.91641 0.90469 0.89814 0.90156 0.90448 0.89505 0.88388 0.90662 0.73310 0.82007 0.91318 0.91433 0.91097 0.92359 0.93631 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.66 37.16 0.36 -0.71 16 2 C -0.14 -1.32 5.39 -26.73 -0.14 -1.46 16 3 C 0.14 1.30 2.89 -66.95 -0.19 1.11 16 4 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.13 -0.80 5.62 -24.89 -0.14 -0.94 16 6 C -0.14 -0.90 7.09 -24.58 -0.17 -1.07 16 7 C 0.10 0.95 5.87 -2.53 -0.01 0.94 16 8 N -0.59 -7.04 3.06 -163.57 -0.50 -7.54 16 9 C 0.53 8.10 7.64 -11.65 -0.09 8.01 16 10 O -0.51 -8.93 15.67 5.48 0.09 -8.85 16 11 C 0.51 8.63 7.81 -11.65 -0.09 8.54 16 12 O -0.49 -8.23 11.04 5.47 0.06 -8.17 16 13 N -0.61 -11.57 5.40 -11.80 -0.06 -11.63 16 14 C 0.29 6.30 7.68 -152.86 -1.17 5.13 16 15 C -0.29 -5.72 9.58 -39.77 -0.38 -6.10 16 16 C 0.05 0.97 7.20 -82.47 -0.59 0.38 16 17 C -0.06 -0.89 10.44 36.00 0.38 -0.51 16 18 N -0.28 -6.44 12.56 33.64 0.42 -6.02 16 19 N -0.34 -8.11 3.62 -61.47 -0.22 -8.33 16 20 C 0.26 6.56 6.02 -5.20 -0.03 6.53 16 21 C -0.54 -15.00 9.39 -34.44 -0.32 -15.32 16 22 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 23 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 24 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 25 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.06 0.32 7.58 -51.93 -0.39 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.08 0.95 6.93 -51.93 -0.36 0.59 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.45 7.79 -51.93 -0.40 0.04 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.07 6.50 -51.93 -0.34 0.74 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.43 8.27 7.46 -40.82 -0.30 7.96 16 41 H 0.16 3.00 5.83 -52.48 -0.31 2.69 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.05 1.16 7.53 -51.93 -0.39 0.77 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -31.58 386.59 -8.50 -40.08 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.11 Total: 6.33 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.71 Total: 6.27 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.37 Total: -57.82 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.15 Total: -17.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.58 -8.50 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532607856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.538 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds