Wall clock time and date at job start Tue Mar 31 2020 18:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47443 * 2 1 4 4 H 1.09003 * 109.87142 * 304.56472 * 3 2 1 5 5 C 1.54324 * 109.88329 * 65.57449 * 3 2 1 6 6 C 1.55160 * 102.93854 * 141.61325 * 5 3 2 7 7 C 1.54913 * 101.58263 * 324.49840 * 6 5 3 8 8 N 1.47021 * 109.88408 * 183.38767 * 3 2 1 9 9 C 1.34780 * 125.64847 * 61.62301 * 8 3 2 10 10 O 1.21369 * 119.99903 * 5.30392 * 9 8 3 11 11 C 1.49303 * 119.99830 * 185.30521 * 9 8 3 12 12 O 1.21384 * 119.99971 * 0.02562 * 11 9 8 13 13 N 1.34782 * 119.99762 * 179.97438 * 11 9 8 14 14 C 1.39200 * 119.99623 * 179.97438 * 13 11 9 15 15 C 1.36210 * 126.27412 * 0.03363 * 14 13 11 16 16 C 1.39690 * 107.85930 * 179.97438 * 15 14 13 17 17 C 1.50696 * 125.77018 * 179.97438 * 16 15 14 18 18 N 1.30850 * 108.46140 * 359.97438 * 16 15 14 19 19 N 1.35853 * 126.26566 * 179.71517 * 14 13 11 20 20 C 1.46496 * 126.10177 * 0.04309 * 19 14 13 21 21 C 1.50694 * 109.47350 * 89.99701 * 20 19 14 22 22 H 1.07992 * 120.00138 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99977 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00236 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47390 * 89.99814 * 25 23 21 27 27 H 1.48497 * 109.47083 * 210.00075 * 25 23 21 28 28 H 1.48506 * 109.46586 * 329.99938 * 25 23 21 29 29 H 1.09002 * 109.46777 * 294.98716 * 1 2 3 30 30 H 1.09006 * 109.46901 * 174.98792 * 1 2 3 31 31 H 1.08996 * 109.47155 * 54.98223 * 1 2 3 32 32 H 1.09007 * 109.47266 * 119.99834 * 2 1 3 33 33 H 1.08998 * 109.47217 * 239.99581 * 2 1 3 34 34 H 1.08995 * 110.72601 * 259.98049 * 5 3 2 35 35 H 1.09001 * 110.71924 * 23.25287 * 5 3 2 36 36 H 1.08997 * 111.00102 * 82.58002 * 6 5 3 37 37 H 1.09005 * 111.00104 * 206.42829 * 6 5 3 38 38 H 1.09000 * 110.36254 * 155.84803 * 7 6 5 39 39 H 1.08999 * 110.36628 * 278.06448 * 7 6 5 40 40 H 0.96997 * 119.99990 * 0.02562 * 13 11 9 41 41 H 1.08003 * 126.07088 * 359.97438 * 15 14 13 42 42 H 1.09002 * 109.47492 * 89.99776 * 17 16 15 43 43 H 1.09001 * 109.47097 * 209.99882 * 17 16 15 44 44 H 1.09004 * 109.47411 * 329.99827 * 17 16 15 45 45 H 1.09004 * 109.47106 * 210.00081 * 20 19 14 46 46 H 1.09007 * 109.47029 * 329.99380 * 20 19 14 47 47 H 0.96997 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6153 1.9857 -0.8442 5 6 1.6493 2.1374 1.3214 6 6 2.8962 3.0041 1.6401 7 6 4.0441 2.0964 1.1320 8 7 3.5080 1.4538 -0.0817 9 6 4.2420 0.9584 -1.0978 10 8 3.6922 0.5359 -2.0939 11 6 5.7314 0.9294 -0.9978 12 8 6.2812 1.3514 -0.0013 13 7 6.4654 0.4335 -2.0137 14 6 7.8540 0.4069 -1.9207 15 6 8.5998 0.8453 -0.8686 16 6 9.9453 0.6371 -1.1810 17 6 11.1177 0.9785 -0.2978 18 7 10.0156 0.0955 -2.3701 19 7 8.7134 -0.0666 -2.8603 20 6 8.3444 -0.6414 -4.1563 21 6 8.2829 0.4520 -5.1915 22 1 8.4968 1.4729 -4.9119 23 6 7.9524 0.1491 -6.4953 24 7 7.6913 -1.0942 -6.8357 25 14 7.8769 1.5042 -7.7788 26 1 9.2100 1.6590 -8.4144 27 1 6.8730 1.1500 -8.8141 28 1 7.4875 2.7811 -7.1280 29 1 -0.3633 0.4341 0.9315 30 1 -0.3633 -1.0238 -0.0898 31 1 -0.3633 0.5897 -0.8416 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.7690 2.7647 1.1816 35 1 1.4793 1.4023 2.1080 36 1 2.8691 3.9447 1.0900 37 1 2.9844 3.1825 2.7118 38 1 4.9216 2.6952 0.8881 39 1 4.2942 1.3457 1.8817 40 1 6.0260 0.0959 -2.8098 41 1 8.2185 1.2772 0.0450 42 1 11.3539 0.1255 0.3384 43 1 11.9813 1.2197 -0.9176 44 1 10.8659 1.8372 0.3245 45 1 9.0896 -1.3800 -4.4517 46 1 7.3690 -1.1214 -4.0763 47 1 7.4585 -1.3072 -7.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532607856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:27 Heat of formation + Delta-G solvation = -11.005371 kcal Electronic energy + Delta-G solvation = -29228.821213 eV Core-core repulsion = 25219.608913 eV Total energy + Delta-G solvation = -4009.212301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68664 -41.74237 -40.12876 -38.82860 -36.44984 -35.73752 -34.48910 -33.87798 -32.65497 -30.89805 -30.11878 -28.84520 -27.84982 -26.87469 -24.90605 -24.40605 -23.25539 -22.40579 -21.46384 -21.16264 -20.23955 -18.97714 -18.74272 -18.27947 -17.94531 -17.52593 -16.93347 -16.55247 -16.37586 -15.87228 -15.75578 -15.50993 -15.03776 -14.87540 -14.59157 -14.47249 -14.38151 -14.09269 -13.98721 -13.62110 -13.47593 -13.42263 -13.14714 -13.03253 -12.95043 -12.78992 -12.70966 -12.64382 -12.33337 -12.15487 -12.10978 -11.99377 -11.75504 -11.57276 -11.47939 -11.40213 -10.80024 -10.72103 -9.93285 -9.70150 -9.19734 -8.40326 -6.58219 -0.07581 0.74876 1.07073 1.33722 1.34043 1.45238 1.73109 1.80007 2.07745 2.24732 2.33398 2.90248 2.97923 3.58588 3.64511 3.77482 3.84838 4.11436 4.16734 4.21714 4.33059 4.45711 4.47305 4.56973 4.64441 4.64899 4.75268 4.79551 4.87719 4.88304 4.92206 4.93908 4.99258 5.11256 5.13487 5.14536 5.15997 5.20449 5.24207 5.35582 5.43214 5.46264 5.71676 5.82799 5.92335 5.97217 6.08978 6.38027 6.54524 6.67917 6.93791 7.13729 8.66618 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003566 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.020681 B = 7850.266229 C = 9776.077181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.126 3.874 4 H 0.074 0.926 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.089 3.911 8 N -0.580 5.580 9 C 0.527 3.473 10 O -0.541 6.541 11 C 0.517 3.483 12 O -0.490 6.490 13 N -0.617 5.617 14 C 0.288 3.712 15 C -0.289 4.289 16 C 0.060 3.940 17 C -0.060 4.060 18 N -0.322 5.322 19 N -0.368 5.368 20 C 0.273 3.727 21 C -0.559 4.559 22 H 0.049 0.951 23 C 0.025 3.975 24 N -0.914 5.914 25 Si 0.971 3.029 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.423 0.577 41 H 0.179 0.821 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.032 0.968 46 H 0.040 0.960 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 7.416 21.072 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.024 3.976 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.032 4.032 8 N -0.313 5.313 9 C 0.308 3.692 10 O -0.419 6.419 11 C 0.298 3.702 12 O -0.363 6.363 13 N -0.264 5.264 14 C 0.067 3.933 15 C -0.321 4.321 16 C -0.105 4.105 17 C -0.119 4.119 18 N -0.147 5.147 19 N -0.153 5.153 20 C 0.154 3.846 21 C -0.597 4.597 22 H 0.068 0.932 23 C -0.177 4.177 24 N -0.552 5.552 25 Si 0.795 3.205 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.261 0.739 41 H 0.196 0.804 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.575 6.833 20.027 24.615 hybrid contribution -0.533 0.093 -1.429 1.528 sum -13.108 6.926 18.598 23.784 Atomic orbital electron populations 1.21677 0.92821 1.02372 1.03010 1.21877 0.98175 0.95524 1.01808 1.22104 0.77089 0.97485 1.00878 0.90826 1.22781 0.99048 0.99317 0.94147 1.22875 0.92393 0.97553 1.03591 1.22851 0.98592 0.96723 0.85042 1.48473 1.08279 1.55421 1.19085 1.19191 0.86362 0.80144 0.83477 1.90807 1.72720 1.47787 1.30554 1.20202 0.88634 0.78674 0.82663 1.90629 1.72478 1.43776 1.29406 1.42456 1.02884 1.59738 1.21350 1.18383 0.81764 1.00894 0.92296 1.21543 0.91421 1.17195 1.01914 1.22937 0.96865 0.97698 0.93000 1.20257 0.91721 1.03287 0.96607 1.77328 0.98176 1.25730 1.13462 1.49355 1.02525 1.48355 1.15101 1.19205 0.95708 0.93959 0.75769 1.21420 1.49991 0.93857 0.94406 0.93242 1.25743 0.93548 0.98385 1.00016 1.69993 1.45708 1.19275 1.20243 0.85359 0.78536 0.78550 0.78092 1.19530 1.19455 1.19678 0.90125 0.92376 0.92728 0.91116 0.94083 0.87526 0.88581 0.90326 0.86768 0.89835 0.89881 0.73887 0.80376 0.89031 0.90916 0.88350 0.95022 0.94230 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.66 71.98 0.70 -1.13 16 2 C -0.14 -2.49 5.39 30.59 0.16 -2.33 16 3 C 0.13 2.24 2.89 45.34 0.13 2.37 16 4 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 5 C -0.12 -1.03 5.62 31.78 0.18 -0.85 16 6 C -0.13 -1.21 7.09 31.99 0.23 -0.99 16 7 C 0.09 1.55 5.87 86.86 0.51 2.06 16 8 N -0.58 -13.50 3.06 -789.77 -2.42 -15.92 16 9 C 0.53 16.57 7.64 87.22 0.67 17.24 16 10 O -0.54 -20.03 15.67 -3.30 -0.05 -20.08 16 11 C 0.52 17.72 7.81 87.22 0.68 18.41 16 12 O -0.49 -16.11 11.04 -3.35 -0.04 -16.15 16 13 N -0.62 -24.54 5.40 -309.59 -1.67 -26.21 16 14 C 0.29 12.69 7.68 131.25 1.01 13.70 16 15 C -0.29 -11.41 9.58 22.15 0.21 -11.20 16 16 C 0.06 2.35 7.20 43.05 0.31 2.66 16 17 C -0.06 -1.58 10.44 71.23 0.74 -0.83 16 18 N -0.32 -15.29 12.56 -47.49 -0.60 -15.88 16 19 N -0.37 -18.26 3.62 -348.40 -1.26 -19.53 16 20 C 0.27 14.84 6.02 85.63 0.52 15.35 16 21 C -0.56 -32.14 9.39 25.60 0.24 -31.90 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.02 1.39 5.46 84.65 0.46 1.85 16 24 N -0.91 -52.75 13.29 21.45 0.28 -52.47 16 25 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 H 0.08 0.66 7.58 -2.39 -0.02 0.64 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.20 8.06 -2.38 -0.02 1.18 16 33 H 0.04 1.05 6.93 -2.39 -0.02 1.04 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.63 7.79 -2.39 -0.02 0.61 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.08 1.72 6.50 -2.39 -0.02 1.71 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 17.53 7.46 -92.71 -0.69 16.83 16 41 H 0.18 6.35 5.83 -2.91 -0.02 6.34 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.04 2.16 7.53 -2.38 -0.02 2.14 16 47 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.54 386.59 3.32 -68.23 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.30 Total: 27.31 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 6.75 Total: 24.40 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.67 Total: -130.01 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.09 Total: -36.23 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.54 3.32 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532607856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.223 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds