Wall clock time and date at job start Tue Mar 31 2020 18:50:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.47137 * 2 1
4 4 H 1.08999 * 109.30134 * 54.58221 * 3 2 1
5 5 C 1.52893 * 109.14989 * 174.01943 * 3 2 1
6 6 C 1.53340 * 108.69361 * 170.90169 * 5 3 2
7 7 H 1.09002 * 109.67193 * 52.28693 * 6 5 3
8 8 C 1.50700 * 109.67404 * 172.78051 * 6 5 3
9 9 O 1.21283 * 120.00304 * 359.50505 * 8 6 5
10 10 N 1.34781 * 119.99761 * 179.50366 * 8 6 5
11 11 C 1.39480 * 119.99652 * 180.02562 * 10 8 6
12 12 C 1.36108 * 126.21701 * 0.14290 * 11 10 8
13 13 C 1.39757 * 107.82602 * 180.26541 * 12 11 10
14 14 C 1.50694 * 125.83715 * 179.72232 * 13 12 11
15 15 N 1.30846 * 108.32281 * 359.76059 * 13 12 11
16 16 N 1.35255 * 126.21202 * 179.97438 * 11 10 8
17 17 C 1.46505 * 126.04878 * 0.02562 * 16 11 10
18 18 C 1.50696 * 109.47011 * 269.70893 * 17 16 11
19 19 H 1.07997 * 120.00012 * 0.02562 * 18 17 16
20 20 C 1.37877 * 119.99842 * 179.97438 * 18 17 16
21 21 N 1.31516 * 120.00069 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99806 * 180.02562 * 20 18 17
23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18
24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18
25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18
26 26 C 1.53068 * 108.45830 * 292.53694 * 6 5 3
27 27 C 1.50179 * 109.89135 * 48.87762 * 26 6 5
28 28 O 1.21283 * 118.24616 * 162.44314 * 27 26 6
29 29 N 1.33354 * 123.50731 * 342.42189 * 27 26 6
30 30 H 1.09003 * 109.47325 * 59.99823 * 1 2 3
31 31 H 1.09003 * 109.46958 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46842 * 300.00146 * 1 2 3
33 33 H 1.09001 * 109.46842 * 239.99854 * 2 1 3
34 34 H 1.08998 * 109.47228 * 119.99713 * 2 1 3
35 35 H 1.09004 * 109.55569 * 51.16282 * 5 3 2
36 36 H 1.08997 * 109.63179 * 290.69210 * 5 3 2
37 37 H 0.96996 * 120.00048 * 359.97438 * 10 8 6
38 38 H 1.07998 * 126.08455 * 0.05585 * 12 11 10
39 39 H 1.09005 * 109.47342 * 270.01694 * 14 13 12
40 40 H 1.09003 * 109.47288 * 30.02204 * 14 13 12
41 41 H 1.09009 * 109.47009 * 150.01920 * 14 13 12
42 42 H 1.09008 * 109.47050 * 149.71090 * 17 16 11
43 43 H 1.08991 * 109.47237 * 29.71234 * 17 16 11
44 44 H 0.97000 * 119.99838 * 359.97438 * 21 20 18
45 45 H 1.08996 * 109.40483 * 169.01153 * 26 6 5
46 46 H 1.09007 * 109.39831 * 288.75610 * 26 6 5
47 47 H 0.97000 * 117.94159 * 182.22027 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5980 1.9809 0.8384
5 6 3.5615 1.4366 0.1505
6 6 4.0836 2.8600 -0.0786
7 1 3.5435 3.5566 0.5626
8 6 5.5560 2.9173 0.2372
9 8 6.1338 1.9214 0.6182
10 7 6.2309 4.0755 0.0962
11 6 7.5938 4.1284 0.3880
12 6 8.3647 3.0928 0.8189
13 6 9.6653 3.5726 0.9967
14 6 10.8463 2.7656 1.4708
15 7 9.6818 4.8425 0.6818
16 7 8.3900 5.2174 0.2910
17 6 7.9735 6.5544 -0.1395
18 6 8.1384 6.6753 -1.6326
19 1 8.5152 5.8398 -2.2037
20 6 7.8070 7.8523 -2.2696
21 7 7.3476 8.8697 -1.5742
22 14 8.0107 8.0020 -4.1204
23 1 6.7570 7.5754 -4.7924
24 1 8.3057 9.4140 -4.4735
25 1 9.1311 7.1356 -4.5668
26 6 3.8566 3.2291 -1.5467
27 6 2.4434 2.9092 -1.9414
28 8 1.9977 3.4226 -2.9457
29 7 1.6524 2.0905 -1.2468
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 3.9985 0.7636 -0.5873
36 1 3.8290 1.1060 1.1541
37 1 5.7689 4.8719 -0.2089
38 1 8.0302 2.0812 0.9955
39 1 10.9076 2.8155 2.5580
40 1 10.7251 1.7276 1.1610
41 1 11.7606 3.1700 1.0364
42 1 8.5902 7.3043 0.3560
43 1 6.9279 6.7118 0.1245
44 1 7.2415 8.7918 -0.6132
45 1 4.0387 4.2949 -1.6845
46 1 4.5448 2.6615 -2.1732
47 1 0.7636 1.9150 -1.5932
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000543539276.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:50:48
Heat of formation + Delta-G solvation = -16.214113 kcal
Electronic energy + Delta-G solvation = -29193.913362 eV
Core-core repulsion = 25184.475193 eV
Total energy + Delta-G solvation = -4009.438169 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.29401 -40.60821 -39.22293 -37.29788 -34.94393 -34.27229 -34.07471 -32.38530
-32.11844 -29.47070 -29.06426 -28.34489 -25.89746 -25.68704 -23.87455 -22.94592
-22.18618 -21.19273 -19.90744 -19.61940 -19.26555 -17.70913 -17.53586 -16.87014
-16.59109 -16.37972 -15.69877 -15.22380 -14.92267 -14.80798 -14.50184 -14.16748
-14.10052 -13.87442 -13.86869 -13.61980 -13.31443 -13.15142 -12.85083 -12.58850
-12.36183 -12.08703 -11.90838 -11.82667 -11.75345 -11.67126 -11.44305 -11.38022
-11.21519 -11.18263 -10.80644 -10.50151 -10.36089 -10.23771 -9.88005 -9.55797
-9.37144 -9.31955 -8.67519 -7.97673 -7.56987 -6.68437 -4.46290 2.07160
2.44136 2.62494 2.95301 2.98707 3.32458 3.35922 3.47270 3.51369
3.60471 4.06653 4.16518 4.27082 4.33159 4.38124 4.62223 4.63847
4.70786 4.88712 5.00918 5.03110 5.11662 5.23174 5.25621 5.37025
5.43545 5.52163 5.54050 5.59618 5.68118 5.73905 5.85587 5.94155
6.02281 6.06372 6.14159 6.27110 6.43971 6.51817 6.57241 6.76389
7.06442 7.37563 7.45920 7.55887 7.68719 7.98724 8.06773 8.24165
8.47835 8.53278 9.23405 10.68009
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.009655 B = 0.003745 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2899.442114 B = 7474.652181 C = 9859.466515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.136 4.136
3 C 0.139 3.861
4 H 0.079 0.921
5 C -0.112 4.112
6 C -0.105 4.105
7 H 0.110 0.890
8 C 0.526 3.474
9 O -0.509 6.509
10 N -0.638 5.638
11 C 0.301 3.699
12 C -0.293 4.293
13 C 0.052 3.948
14 C -0.062 4.062
15 N -0.284 5.284
16 N -0.342 5.342
17 C 0.247 3.753
18 C -0.619 4.619
19 H 0.060 0.940
20 C 0.029 3.971
21 N -0.899 5.899
22 Si 1.075 2.925
23 H -0.283 1.283
24 H -0.280 1.280
25 H -0.286 1.286
26 C -0.133 4.133
27 C 0.527 3.473
28 O -0.550 6.550
29 N -0.717 5.717
30 H 0.053 0.947
31 H 0.060 0.940
32 H 0.058 0.942
33 H 0.072 0.928
34 H 0.082 0.918
35 H 0.084 0.916
36 H 0.098 0.902
37 H 0.416 0.584
38 H 0.163 0.837
39 H 0.068 0.932
40 H 0.071 0.929
41 H 0.067 0.933
42 H 0.047 0.953
43 H 0.032 0.968
44 H 0.268 0.732
45 H 0.113 0.887
46 H 0.110 0.890
47 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.817 -16.974 6.526 21.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.174 4.174
3 C 0.034 3.966
4 H 0.097 0.903
5 C -0.150 4.150
6 C -0.127 4.127
7 H 0.128 0.872
8 C 0.312 3.688
9 O -0.383 6.383
10 N -0.285 5.285
11 C 0.078 3.922
12 C -0.325 4.325
13 C -0.113 4.113
14 C -0.121 4.121
15 N -0.109 5.109
16 N -0.127 5.127
17 C 0.129 3.871
18 C -0.658 4.658
19 H 0.078 0.922
20 C -0.177 4.177
21 N -0.533 5.533
22 Si 0.902 3.098
23 H -0.209 1.209
24 H -0.206 1.206
25 H -0.212 1.212
26 C -0.173 4.173
27 C 0.313 3.687
28 O -0.427 6.427
29 N -0.371 5.371
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.077 0.923
33 H 0.091 0.909
34 H 0.100 0.900
35 H 0.102 0.898
36 H 0.116 0.884
37 H 0.252 0.748
38 H 0.180 0.820
39 H 0.087 0.913
40 H 0.090 0.910
41 H 0.086 0.914
42 H 0.065 0.935
43 H 0.050 0.950
44 H 0.078 0.922
45 H 0.131 0.869
46 H 0.128 0.872
47 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges -10.973 -15.135 4.942 19.337
hybrid contribution -0.914 -1.174 1.061 1.828
sum -11.888 -16.309 6.003 21.055
Atomic orbital electron populations
1.21815 0.95349 1.02279 1.01945 1.21923 0.96460 0.95325 1.03703
1.21076 0.95273 0.93795 0.86446 0.90277 1.21802 0.92969 0.94888
1.05305 1.21420 0.92687 1.00535 0.98041 0.87173 1.20335 0.88688
0.82227 0.77543 1.90644 1.69066 1.34210 1.44384 1.42822 1.06452
1.13849 1.65359 1.17937 0.82740 0.90024 1.01449 1.21267 0.92188
1.00267 1.18777 1.22060 0.95777 0.92474 1.00976 1.20030 0.93652
0.97840 1.00602 1.77374 0.97768 1.13974 1.21799 1.49090 1.04500
1.09151 1.49931 1.19655 0.94902 0.75437 0.97100 1.22206 1.49816
1.02924 0.90818 0.92167 1.25913 0.92952 0.91370 1.07460 1.70836
1.41416 1.31978 1.09108 0.83437 0.76819 0.76382 0.73197 1.20918
1.20552 1.21212 1.21737 0.94517 1.05753 0.95276 1.19937 0.87773
0.77953 0.83005 1.90803 1.74384 1.51371 1.26179 1.45700 1.18337
1.47764 1.25271 0.92763 0.92130 0.92260 0.90928 0.89973 0.89769
0.88351 0.74762 0.82002 0.91305 0.91037 0.91435 0.93548 0.94993
0.92168 0.86882 0.87177 0.76471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.69 9.76 37.16 0.36 -0.33 16
2 C -0.14 -0.68 5.56 -26.73 -0.15 -0.83 16
3 C 0.14 0.87 3.07 -68.38 -0.21 0.66 16
4 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
5 C -0.11 -0.88 3.98 -26.61 -0.11 -0.98 16
6 C -0.11 -1.02 2.60 -91.56 -0.24 -1.25 16
7 H 0.11 0.87 8.13 -51.93 -0.42 0.45 16
8 C 0.53 7.28 7.10 -10.98 -0.08 7.21 16
9 O -0.51 -8.18 13.03 5.56 0.07 -8.10 16
10 N -0.64 -10.42 5.33 -11.46 -0.06 -10.48 16
11 C 0.30 6.13 7.66 -153.16 -1.17 4.96 16
12 C -0.29 -5.79 9.58 -39.78 -0.38 -6.17 16
13 C 0.05 1.03 7.21 -82.45 -0.59 0.43 16
14 C -0.06 -0.90 10.44 36.00 0.38 -0.53 16
15 N -0.28 -6.55 12.56 33.65 0.42 -6.13 16
16 N -0.34 -7.90 3.60 -61.57 -0.22 -8.12 16
17 C 0.25 6.07 5.32 -5.19 -0.03 6.04 16
18 C -0.62 -16.71 9.39 -34.44 -0.32 -17.03 16
19 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16
20 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16
21 N -0.90 -25.29 13.65 55.43 0.76 -24.54 16
22 Si 1.07 24.44 29.90 -169.99 -5.08 19.35 16
23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16
26 C -0.13 -1.46 5.20 -28.10 -0.15 -1.60 16
27 C 0.53 6.25 7.71 -11.87 -0.09 6.16 16
28 O -0.55 -9.01 17.78 5.55 0.10 -8.91 16
29 N -0.72 -6.05 5.12 -54.86 -0.28 -6.33 16
30 H 0.05 0.25 6.67 -51.93 -0.35 -0.10 16
31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16
36 H 0.10 0.74 7.89 -51.93 -0.41 0.33 16
37 H 0.42 6.37 7.68 -40.82 -0.31 6.06 16
38 H 0.16 3.05 5.83 -52.49 -0.31 2.75 16
39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
41 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16
42 H 0.05 1.21 8.01 -51.92 -0.42 0.80 16
43 H 0.03 0.74 7.35 -51.93 -0.38 0.36 16
44 H 0.27 7.38 7.22 -40.82 -0.29 7.09 16
45 H 0.11 1.30 7.94 -51.93 -0.41 0.89 16
46 H 0.11 1.25 8.09 -51.93 -0.42 0.83 16
47 H 0.40 3.08 7.04 -40.82 -0.29 2.80 16
LS Contribution 385.27 15.07 5.81 5.81
Total: -1.00 -34.51 385.27 -8.39 -42.90
By element:
Atomic # 1 Polarization: 14.16 SS G_CDS: -7.02 Total: 7.14 kcal
Atomic # 6 Polarization: 0.29 SS G_CDS: -2.88 Total: -2.59 kcal
Atomic # 7 Polarization: -56.22 SS G_CDS: 0.62 Total: -55.60 kcal
Atomic # 8 Polarization: -17.18 SS G_CDS: 0.17 Total: -17.01 kcal
Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.35 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -34.51 -8.39 -42.90 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000543539276.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.687 kcal
(2) G-P(sol) polarization free energy of solvation -34.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.828 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds