Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 H 1.08999 * 109.30134 * 54.58221 * 3 2 1 5 5 C 1.52893 * 109.14989 * 174.01943 * 3 2 1 6 6 C 1.53340 * 108.69361 * 170.90169 * 5 3 2 7 7 H 1.09002 * 109.67193 * 52.28693 * 6 5 3 8 8 C 1.50700 * 109.67404 * 172.78051 * 6 5 3 9 9 O 1.21283 * 120.00304 * 359.50505 * 8 6 5 10 10 N 1.34781 * 119.99761 * 179.50366 * 8 6 5 11 11 C 1.39480 * 119.99652 * 180.02562 * 10 8 6 12 12 C 1.36108 * 126.21701 * 0.14290 * 11 10 8 13 13 C 1.39757 * 107.82602 * 180.26541 * 12 11 10 14 14 C 1.50694 * 125.83715 * 179.72232 * 13 12 11 15 15 N 1.30846 * 108.32281 * 359.76059 * 13 12 11 16 16 N 1.35255 * 126.21202 * 179.97438 * 11 10 8 17 17 C 1.46505 * 126.04878 * 0.02562 * 16 11 10 18 18 C 1.50696 * 109.47011 * 269.70893 * 17 16 11 19 19 H 1.07997 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00069 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99806 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18 24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18 26 26 C 1.53068 * 108.45830 * 292.53694 * 6 5 3 27 27 C 1.50179 * 109.89135 * 48.87762 * 26 6 5 28 28 O 1.21283 * 118.24616 * 162.44314 * 27 26 6 29 29 N 1.33354 * 123.50731 * 342.42189 * 27 26 6 30 30 H 1.09003 * 109.47325 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46842 * 300.00146 * 1 2 3 33 33 H 1.09001 * 109.46842 * 239.99854 * 2 1 3 34 34 H 1.08998 * 109.47228 * 119.99713 * 2 1 3 35 35 H 1.09004 * 109.55569 * 51.16282 * 5 3 2 36 36 H 1.08997 * 109.63179 * 290.69210 * 5 3 2 37 37 H 0.96996 * 120.00048 * 359.97438 * 10 8 6 38 38 H 1.07998 * 126.08455 * 0.05585 * 12 11 10 39 39 H 1.09005 * 109.47342 * 270.01694 * 14 13 12 40 40 H 1.09003 * 109.47288 * 30.02204 * 14 13 12 41 41 H 1.09009 * 109.47009 * 150.01920 * 14 13 12 42 42 H 1.09008 * 109.47050 * 149.71090 * 17 16 11 43 43 H 1.08991 * 109.47237 * 29.71234 * 17 16 11 44 44 H 0.97000 * 119.99838 * 359.97438 * 21 20 18 45 45 H 1.08996 * 109.40483 * 169.01153 * 26 6 5 46 46 H 1.09007 * 109.39831 * 288.75610 * 26 6 5 47 47 H 0.97000 * 117.94159 * 182.22027 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8384 5 6 3.5615 1.4366 0.1505 6 6 4.0836 2.8600 -0.0786 7 1 3.5435 3.5566 0.5626 8 6 5.5560 2.9173 0.2372 9 8 6.1338 1.9214 0.6182 10 7 6.2309 4.0755 0.0962 11 6 7.5938 4.1284 0.3880 12 6 8.3647 3.0928 0.8189 13 6 9.6653 3.5726 0.9967 14 6 10.8463 2.7656 1.4708 15 7 9.6818 4.8425 0.6818 16 7 8.3900 5.2174 0.2910 17 6 7.9735 6.5544 -0.1395 18 6 8.1384 6.6753 -1.6326 19 1 8.5152 5.8398 -2.2037 20 6 7.8070 7.8523 -2.2696 21 7 7.3476 8.8697 -1.5742 22 14 8.0107 8.0020 -4.1204 23 1 6.7570 7.5754 -4.7924 24 1 8.3057 9.4140 -4.4735 25 1 9.1311 7.1356 -4.5668 26 6 3.8566 3.2291 -1.5467 27 6 2.4434 2.9092 -1.9414 28 8 1.9977 3.4226 -2.9457 29 7 1.6524 2.0905 -1.2468 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9985 0.7636 -0.5873 36 1 3.8290 1.1060 1.1541 37 1 5.7689 4.8719 -0.2089 38 1 8.0302 2.0812 0.9955 39 1 10.9076 2.8155 2.5580 40 1 10.7251 1.7276 1.1610 41 1 11.7606 3.1700 1.0364 42 1 8.5902 7.3043 0.3560 43 1 6.9279 6.7118 0.1245 44 1 7.2415 8.7918 -0.6132 45 1 4.0387 4.2949 -1.6845 46 1 4.5448 2.6615 -2.1732 47 1 0.7636 1.9150 -1.5932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543539276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = -16.214113 kcal Electronic energy + Delta-G solvation = -29193.913362 eV Core-core repulsion = 25184.475193 eV Total energy + Delta-G solvation = -4009.438169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29401 -40.60821 -39.22293 -37.29788 -34.94393 -34.27229 -34.07471 -32.38530 -32.11844 -29.47070 -29.06426 -28.34489 -25.89746 -25.68704 -23.87455 -22.94592 -22.18618 -21.19273 -19.90744 -19.61940 -19.26555 -17.70913 -17.53586 -16.87014 -16.59109 -16.37972 -15.69877 -15.22380 -14.92267 -14.80798 -14.50184 -14.16748 -14.10052 -13.87442 -13.86869 -13.61980 -13.31443 -13.15142 -12.85083 -12.58850 -12.36183 -12.08703 -11.90838 -11.82667 -11.75345 -11.67126 -11.44305 -11.38022 -11.21519 -11.18263 -10.80644 -10.50151 -10.36089 -10.23771 -9.88005 -9.55797 -9.37144 -9.31955 -8.67519 -7.97673 -7.56987 -6.68437 -4.46290 2.07160 2.44136 2.62494 2.95301 2.98707 3.32458 3.35922 3.47270 3.51369 3.60471 4.06653 4.16518 4.27082 4.33159 4.38124 4.62223 4.63847 4.70786 4.88712 5.00918 5.03110 5.11662 5.23174 5.25621 5.37025 5.43545 5.52163 5.54050 5.59618 5.68118 5.73905 5.85587 5.94155 6.02281 6.06372 6.14159 6.27110 6.43971 6.51817 6.57241 6.76389 7.06442 7.37563 7.45920 7.55887 7.68719 7.98724 8.06773 8.24165 8.47835 8.53278 9.23405 10.68009 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.003745 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.442114 B = 7474.652181 C = 9859.466515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.105 4.105 7 H 0.110 0.890 8 C 0.526 3.474 9 O -0.509 6.509 10 N -0.638 5.638 11 C 0.301 3.699 12 C -0.293 4.293 13 C 0.052 3.948 14 C -0.062 4.062 15 N -0.284 5.284 16 N -0.342 5.342 17 C 0.247 3.753 18 C -0.619 4.619 19 H 0.060 0.940 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 1.075 2.925 23 H -0.283 1.283 24 H -0.280 1.280 25 H -0.286 1.286 26 C -0.133 4.133 27 C 0.527 3.473 28 O -0.550 6.550 29 N -0.717 5.717 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.416 0.584 38 H 0.163 0.837 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.032 0.968 44 H 0.268 0.732 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 -16.974 6.526 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.127 4.127 7 H 0.128 0.872 8 C 0.312 3.688 9 O -0.383 6.383 10 N -0.285 5.285 11 C 0.078 3.922 12 C -0.325 4.325 13 C -0.113 4.113 14 C -0.121 4.121 15 N -0.109 5.109 16 N -0.127 5.127 17 C 0.129 3.871 18 C -0.658 4.658 19 H 0.078 0.922 20 C -0.177 4.177 21 N -0.533 5.533 22 Si 0.902 3.098 23 H -0.209 1.209 24 H -0.206 1.206 25 H -0.212 1.212 26 C -0.173 4.173 27 C 0.313 3.687 28 O -0.427 6.427 29 N -0.371 5.371 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.252 0.748 38 H 0.180 0.820 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.973 -15.135 4.942 19.337 hybrid contribution -0.914 -1.174 1.061 1.828 sum -11.888 -16.309 6.003 21.055 Atomic orbital electron populations 1.21815 0.95349 1.02279 1.01945 1.21923 0.96460 0.95325 1.03703 1.21076 0.95273 0.93795 0.86446 0.90277 1.21802 0.92969 0.94888 1.05305 1.21420 0.92687 1.00535 0.98041 0.87173 1.20335 0.88688 0.82227 0.77543 1.90644 1.69066 1.34210 1.44384 1.42822 1.06452 1.13849 1.65359 1.17937 0.82740 0.90024 1.01449 1.21267 0.92188 1.00267 1.18777 1.22060 0.95777 0.92474 1.00976 1.20030 0.93652 0.97840 1.00602 1.77374 0.97768 1.13974 1.21799 1.49090 1.04500 1.09151 1.49931 1.19655 0.94902 0.75437 0.97100 1.22206 1.49816 1.02924 0.90818 0.92167 1.25913 0.92952 0.91370 1.07460 1.70836 1.41416 1.31978 1.09108 0.83437 0.76819 0.76382 0.73197 1.20918 1.20552 1.21212 1.21737 0.94517 1.05753 0.95276 1.19937 0.87773 0.77953 0.83005 1.90803 1.74384 1.51371 1.26179 1.45700 1.18337 1.47764 1.25271 0.92763 0.92130 0.92260 0.90928 0.89973 0.89769 0.88351 0.74762 0.82002 0.91305 0.91037 0.91435 0.93548 0.94993 0.92168 0.86882 0.87177 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.76 37.16 0.36 -0.33 16 2 C -0.14 -0.68 5.56 -26.73 -0.15 -0.83 16 3 C 0.14 0.87 3.07 -68.38 -0.21 0.66 16 4 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 5 C -0.11 -0.88 3.98 -26.61 -0.11 -0.98 16 6 C -0.11 -1.02 2.60 -91.56 -0.24 -1.25 16 7 H 0.11 0.87 8.13 -51.93 -0.42 0.45 16 8 C 0.53 7.28 7.10 -10.98 -0.08 7.21 16 9 O -0.51 -8.18 13.03 5.56 0.07 -8.10 16 10 N -0.64 -10.42 5.33 -11.46 -0.06 -10.48 16 11 C 0.30 6.13 7.66 -153.16 -1.17 4.96 16 12 C -0.29 -5.79 9.58 -39.78 -0.38 -6.17 16 13 C 0.05 1.03 7.21 -82.45 -0.59 0.43 16 14 C -0.06 -0.90 10.44 36.00 0.38 -0.53 16 15 N -0.28 -6.55 12.56 33.65 0.42 -6.13 16 16 N -0.34 -7.90 3.60 -61.57 -0.22 -8.12 16 17 C 0.25 6.07 5.32 -5.19 -0.03 6.04 16 18 C -0.62 -16.71 9.39 -34.44 -0.32 -17.03 16 19 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 21 N -0.90 -25.29 13.65 55.43 0.76 -24.54 16 22 Si 1.07 24.44 29.90 -169.99 -5.08 19.35 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.13 -1.46 5.20 -28.10 -0.15 -1.60 16 27 C 0.53 6.25 7.71 -11.87 -0.09 6.16 16 28 O -0.55 -9.01 17.78 5.55 0.10 -8.91 16 29 N -0.72 -6.05 5.12 -54.86 -0.28 -6.33 16 30 H 0.05 0.25 6.67 -51.93 -0.35 -0.10 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.10 0.74 7.89 -51.93 -0.41 0.33 16 37 H 0.42 6.37 7.68 -40.82 -0.31 6.06 16 38 H 0.16 3.05 5.83 -52.49 -0.31 2.75 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.05 1.21 8.01 -51.92 -0.42 0.80 16 43 H 0.03 0.74 7.35 -51.93 -0.38 0.36 16 44 H 0.27 7.38 7.22 -40.82 -0.29 7.09 16 45 H 0.11 1.30 7.94 -51.93 -0.41 0.89 16 46 H 0.11 1.25 8.09 -51.93 -0.42 0.83 16 47 H 0.40 3.08 7.04 -40.82 -0.29 2.80 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -34.51 385.27 -8.39 -42.90 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.02 Total: 7.14 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.88 Total: -2.59 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.62 Total: -55.60 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.17 Total: -17.01 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.51 -8.39 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543539276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.687 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds