Wall clock time and date at job start Tue Mar 31 2020 18:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 H 1.08999 * 109.30134 * 54.58221 * 3 2 1 5 5 C 1.52893 * 109.14989 * 174.01943 * 3 2 1 6 6 C 1.53340 * 108.69361 * 170.90169 * 5 3 2 7 7 H 1.09002 * 109.67193 * 52.28693 * 6 5 3 8 8 C 1.50700 * 109.67404 * 172.78051 * 6 5 3 9 9 O 1.21283 * 120.00304 * 359.50505 * 8 6 5 10 10 N 1.34781 * 119.99761 * 179.50366 * 8 6 5 11 11 C 1.39480 * 119.99652 * 180.02562 * 10 8 6 12 12 C 1.36108 * 126.21701 * 0.14290 * 11 10 8 13 13 C 1.39757 * 107.82602 * 180.26541 * 12 11 10 14 14 C 1.50694 * 125.83715 * 179.72232 * 13 12 11 15 15 N 1.30846 * 108.32281 * 359.76059 * 13 12 11 16 16 N 1.35255 * 126.21202 * 179.97438 * 11 10 8 17 17 C 1.46505 * 126.04878 * 0.02562 * 16 11 10 18 18 C 1.50696 * 109.47011 * 269.70893 * 17 16 11 19 19 H 1.07997 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00069 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99806 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00621 * 22 20 18 24 24 H 1.48503 * 109.47399 * 210.00111 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00717 * 22 20 18 26 26 C 1.53068 * 108.45830 * 292.53694 * 6 5 3 27 27 C 1.50179 * 109.89135 * 48.87762 * 26 6 5 28 28 O 1.21283 * 118.24616 * 162.44314 * 27 26 6 29 29 N 1.33354 * 123.50731 * 342.42189 * 27 26 6 30 30 H 1.09003 * 109.47325 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46842 * 300.00146 * 1 2 3 33 33 H 1.09001 * 109.46842 * 239.99854 * 2 1 3 34 34 H 1.08998 * 109.47228 * 119.99713 * 2 1 3 35 35 H 1.09004 * 109.55569 * 51.16282 * 5 3 2 36 36 H 1.08997 * 109.63179 * 290.69210 * 5 3 2 37 37 H 0.96996 * 120.00048 * 359.97438 * 10 8 6 38 38 H 1.07998 * 126.08455 * 0.05585 * 12 11 10 39 39 H 1.09005 * 109.47342 * 270.01694 * 14 13 12 40 40 H 1.09003 * 109.47288 * 30.02204 * 14 13 12 41 41 H 1.09009 * 109.47009 * 150.01920 * 14 13 12 42 42 H 1.09008 * 109.47050 * 149.71090 * 17 16 11 43 43 H 1.08991 * 109.47237 * 29.71234 * 17 16 11 44 44 H 0.97000 * 119.99838 * 359.97438 * 21 20 18 45 45 H 1.08996 * 109.40483 * 169.01153 * 26 6 5 46 46 H 1.09007 * 109.39831 * 288.75610 * 26 6 5 47 47 H 0.97000 * 117.94159 * 182.22027 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8384 5 6 3.5615 1.4366 0.1505 6 6 4.0836 2.8600 -0.0786 7 1 3.5435 3.5566 0.5626 8 6 5.5560 2.9173 0.2372 9 8 6.1338 1.9214 0.6182 10 7 6.2309 4.0755 0.0962 11 6 7.5938 4.1284 0.3880 12 6 8.3647 3.0928 0.8189 13 6 9.6653 3.5726 0.9967 14 6 10.8463 2.7656 1.4708 15 7 9.6818 4.8425 0.6818 16 7 8.3900 5.2174 0.2910 17 6 7.9735 6.5544 -0.1395 18 6 8.1384 6.6753 -1.6326 19 1 8.5152 5.8398 -2.2037 20 6 7.8070 7.8523 -2.2696 21 7 7.3476 8.8697 -1.5742 22 14 8.0107 8.0020 -4.1204 23 1 6.7570 7.5754 -4.7924 24 1 8.3057 9.4140 -4.4735 25 1 9.1311 7.1356 -4.5668 26 6 3.8566 3.2291 -1.5467 27 6 2.4434 2.9092 -1.9414 28 8 1.9977 3.4226 -2.9457 29 7 1.6524 2.0905 -1.2468 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9985 0.7636 -0.5873 36 1 3.8290 1.1060 1.1541 37 1 5.7689 4.8719 -0.2089 38 1 8.0302 2.0812 0.9955 39 1 10.9076 2.8155 2.5580 40 1 10.7251 1.7276 1.1610 41 1 11.7606 3.1700 1.0364 42 1 8.5902 7.3043 0.3560 43 1 6.9279 6.7118 0.1245 44 1 7.2415 8.7918 -0.6132 45 1 4.0387 4.2949 -1.6845 46 1 4.5448 2.6615 -2.1732 47 1 0.7636 1.9150 -1.5932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543539276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:47 Heat of formation + Delta-G solvation = -39.522252 kcal Electronic energy + Delta-G solvation = -29194.924079 eV Core-core repulsion = 25184.475193 eV Total energy + Delta-G solvation = -4010.448885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.61132 -41.73279 -40.44153 -38.13056 -36.48702 -35.86875 -35.05287 -33.83290 -33.06472 -30.69828 -30.15463 -29.78877 -27.50945 -26.74127 -25.02533 -24.52158 -22.89809 -22.29820 -21.37251 -20.67709 -20.32170 -19.50430 -18.53366 -18.19062 -17.89464 -17.38067 -16.82559 -16.43951 -16.28492 -15.88618 -15.69244 -15.49742 -15.39686 -14.97425 -14.77398 -14.68507 -14.44909 -14.34768 -14.11943 -13.86077 -13.56354 -13.48761 -13.28620 -13.06782 -13.00025 -12.60308 -12.42303 -12.32948 -12.15825 -12.03046 -11.91623 -11.89678 -11.77765 -11.58859 -11.27626 -11.25348 -10.74055 -10.73924 -10.13113 -9.69161 -9.14628 -8.82841 -6.63748 0.69682 1.23833 1.48175 1.49570 1.54399 1.55607 1.74127 1.98147 2.09121 2.20593 2.43585 2.95185 3.14864 3.39974 3.50485 3.62531 3.73598 3.88956 4.01375 4.11511 4.19573 4.26359 4.42003 4.45982 4.50520 4.54187 4.61575 4.64913 4.68555 4.81044 4.85690 4.86360 4.90919 4.95916 5.10325 5.14812 5.18305 5.19311 5.29194 5.44967 5.50552 5.78480 5.79338 5.92860 6.10865 6.22228 6.25195 6.34636 6.85074 6.94359 7.11877 7.12743 8.52728 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.003745 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.442114 B = 7474.652181 C = 9859.466515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C 0.141 3.859 4 H 0.102 0.898 5 C -0.108 4.108 6 C -0.090 4.090 7 H 0.137 0.863 8 C 0.529 3.471 9 O -0.526 6.526 10 N -0.640 5.640 11 C 0.299 3.701 12 C -0.303 4.303 13 C 0.060 3.940 14 C -0.061 4.061 15 N -0.334 5.334 16 N -0.367 5.367 17 C 0.260 3.740 18 C -0.627 4.627 19 H 0.040 0.960 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 1.115 2.885 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.283 1.283 26 C -0.131 4.131 27 C 0.529 3.471 28 O -0.602 6.602 29 N -0.702 5.702 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.419 0.581 38 H 0.174 0.826 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.044 0.956 44 H 0.262 0.738 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.951 -18.928 7.273 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.037 3.963 4 H 0.120 0.880 5 C -0.146 4.146 6 C -0.112 4.112 7 H 0.154 0.846 8 C 0.318 3.682 9 O -0.401 6.401 10 N -0.288 5.288 11 C 0.077 3.923 12 C -0.334 4.334 13 C -0.106 4.106 14 C -0.119 4.119 15 N -0.159 5.159 16 N -0.152 5.152 17 C 0.141 3.859 18 C -0.665 4.665 19 H 0.058 0.942 20 C -0.210 4.210 21 N -0.551 5.551 22 Si 0.937 3.063 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.208 1.208 26 C -0.171 4.171 27 C 0.316 3.684 28 O -0.484 6.484 29 N -0.354 5.354 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.256 0.744 38 H 0.191 0.809 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.142 -17.144 5.743 21.780 hybrid contribution -0.555 -0.711 0.933 1.298 sum -12.697 -17.855 6.676 22.904 Atomic orbital electron populations 1.21825 0.94802 1.02674 1.02135 1.21896 0.96844 0.94092 1.04102 1.21277 0.94276 0.94944 0.85804 0.87990 1.21836 0.93880 0.93169 1.05745 1.21448 0.89621 1.02667 0.97446 0.84559 1.21097 0.89947 0.80987 0.76213 1.90620 1.69828 1.34590 1.45035 1.43082 1.05050 1.15005 1.65634 1.18378 0.84275 0.89324 1.00343 1.21512 0.92295 1.00494 1.19145 1.22942 0.97388 0.91678 0.98553 1.20242 0.91544 0.98201 1.01959 1.77324 0.98324 1.15947 1.24266 1.48906 1.05336 1.09152 1.51851 1.19286 0.94875 0.76246 0.95521 1.22308 1.49690 1.02374 0.92094 0.94210 1.27124 0.92080 0.90971 1.10812 1.70922 1.42691 1.32525 1.08992 0.82921 0.77580 0.76608 0.69228 1.19104 1.20068 1.20826 1.21664 0.94127 1.05253 0.96058 1.19972 0.87988 0.77936 0.82501 1.90781 1.75335 1.53722 1.28523 1.45686 1.18066 1.46242 1.25386 0.93124 0.91719 0.91528 0.91638 0.88538 0.90523 0.87220 0.74389 0.80870 0.89047 0.88580 0.91070 0.96007 0.93875 0.92822 0.87680 0.87780 0.75800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.76 71.98 0.70 -0.26 16 2 C -0.13 -0.92 5.56 30.60 0.17 -0.75 16 3 C 0.14 1.33 3.07 45.10 0.14 1.47 16 4 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 5 C -0.11 -1.41 3.98 30.67 0.12 -1.29 16 6 C -0.09 -1.57 2.60 -11.40 -0.03 -1.60 16 7 H 0.14 1.73 8.13 -2.39 -0.02 1.71 16 8 C 0.53 13.96 7.10 87.66 0.62 14.59 16 9 O -0.53 -16.04 13.03 -3.04 -0.04 -16.08 16 10 N -0.64 -20.70 5.33 -308.56 -1.64 -22.35 16 11 C 0.30 12.23 7.66 131.32 1.01 13.24 16 12 C -0.30 -11.75 9.58 22.14 0.21 -11.54 16 13 C 0.06 2.32 7.21 43.07 0.31 2.63 16 14 C -0.06 -1.64 10.44 71.23 0.74 -0.89 16 15 N -0.33 -15.66 12.56 -47.45 -0.60 -16.25 16 16 N -0.37 -17.37 3.60 -348.71 -1.26 -18.63 16 17 C 0.26 13.19 5.32 85.63 0.46 13.64 16 18 C -0.63 -34.61 9.39 25.60 0.24 -34.37 16 19 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 20 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 21 N -0.92 -52.12 13.65 21.45 0.29 -51.83 16 22 Si 1.12 49.20 29.90 68.60 2.05 51.25 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.13 -2.78 5.20 29.71 0.15 -2.63 16 27 C 0.53 12.14 7.71 87.71 0.68 12.82 16 28 O -0.60 -19.84 17.78 -3.04 -0.05 -19.90 16 29 N -0.70 -10.50 5.12 -446.67 -2.29 -12.79 16 30 H 0.05 0.35 6.67 -2.39 -0.02 0.33 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.11 1.27 7.89 -2.39 -0.02 1.25 16 37 H 0.42 12.85 7.68 -92.71 -0.71 12.14 16 38 H 0.17 6.28 5.83 -2.91 -0.02 6.26 16 39 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.02 1.20 8.01 -2.38 -0.02 1.18 16 43 H 0.04 2.06 7.35 -2.39 -0.02 2.04 16 44 H 0.26 14.78 7.22 -92.71 -0.67 14.11 16 45 H 0.10 2.42 7.94 -2.39 -0.02 2.40 16 46 H 0.10 2.34 8.09 -2.38 -0.02 2.32 16 47 H 0.40 5.54 7.04 -92.71 -0.65 4.89 16 Total: -1.00 -76.32 385.27 2.20 -74.12 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.26 Total: 27.40 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.99 Total: 5.05 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -5.49 Total: -121.84 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.09 Total: -35.98 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Total: -76.32 2.20 -74.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543539276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.600 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds