Wall clock time and date at job start Tue Mar 31 2020 18:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46852 * 2 1 4 4 H 1.08997 * 109.30035 * 305.00168 * 3 2 1 5 5 C 1.52918 * 109.29903 * 185.42059 * 3 2 1 6 6 C 1.52891 * 108.91293 * 188.98137 * 5 3 2 7 7 H 1.09006 * 109.77080 * 187.35243 * 6 5 3 8 8 C 1.50702 * 109.68761 * 307.92105 * 6 5 3 9 9 O 1.21287 * 119.99787 * 95.34095 * 8 6 5 10 10 N 1.34775 * 119.99730 * 275.33102 * 8 6 5 11 11 C 1.39475 * 119.99436 * 180.02562 * 10 8 6 12 12 C 1.36108 * 126.21971 * 359.69854 * 11 10 8 13 13 C 1.39759 * 107.82990 * 179.90279 * 12 11 10 14 14 C 1.50701 * 125.84014 * 180.14239 * 13 12 11 15 15 N 1.30851 * 108.32206 * 0.35978 * 13 12 11 16 16 N 1.35268 * 126.21308 * 180.02562 * 11 10 8 17 17 C 1.46496 * 126.04491 * 359.96635 * 16 11 10 18 18 C 1.50699 * 109.47509 * 90.00124 * 17 16 11 19 19 H 1.08006 * 119.99563 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00308 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47181 * 89.99770 * 22 20 18 24 24 H 1.48496 * 109.47498 * 210.00472 * 22 20 18 25 25 H 1.48513 * 109.47046 * 330.00291 * 22 20 18 26 26 C 1.53070 * 108.33795 * 67.61491 * 6 5 3 27 27 C 1.50181 * 109.89225 * 311.12506 * 26 6 5 28 28 O 1.21280 * 118.24676 * 197.56281 * 27 26 6 29 29 N 1.33353 * 123.50401 * 17.58991 * 27 26 6 30 30 H 1.08995 * 109.47351 * 59.99659 * 1 2 3 31 31 H 1.09006 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47160 * 299.99706 * 1 2 3 33 33 H 1.09002 * 109.47160 * 240.00294 * 2 1 3 34 34 H 1.08995 * 109.47351 * 120.00340 * 2 1 3 35 35 H 1.09008 * 109.60632 * 308.89989 * 5 3 2 36 36 H 1.08998 * 109.60591 * 69.38015 * 5 3 2 37 37 H 0.96991 * 120.00383 * 0.02562 * 10 8 6 38 38 H 1.07998 * 126.08309 * 0.02562 * 12 11 10 39 39 H 1.08999 * 109.46564 * 270.28357 * 14 13 12 40 40 H 1.08995 * 109.46674 * 30.27993 * 14 13 12 41 41 H 1.08997 * 109.46929 * 150.28803 * 14 13 12 42 42 H 1.09005 * 109.46682 * 210.00044 * 17 16 11 43 43 H 1.09001 * 109.47296 * 329.99770 * 17 16 11 44 44 H 0.97001 * 119.99787 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.39664 * 191.00214 * 26 6 5 46 46 H 1.08993 * 109.33448 * 71.22023 * 26 6 5 47 47 H 0.97005 * 117.94156 * 177.79689 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6037 1.9789 -0.8427 5 6 3.5630 1.4402 -0.1363 6 6 4.0829 2.8602 0.0889 7 1 5.1495 2.9019 -0.1325 8 6 3.3414 3.8202 -0.8054 9 8 2.3791 4.4243 -0.3808 10 7 3.7476 4.0076 -2.0767 11 6 3.0615 4.8964 -2.9041 12 6 1.9686 5.6323 -2.5629 13 6 1.5976 6.3895 -3.6775 14 6 0.4389 7.3508 -3.7453 15 7 2.4255 6.1175 -4.6537 16 7 3.3579 5.1791 -4.1933 17 6 4.4592 4.6053 -4.9704 18 6 3.9863 3.3536 -5.6637 19 1 2.9672 3.0188 -5.5377 20 6 4.8544 2.6360 -6.4588 21 7 6.0955 3.0435 -6.6119 22 14 4.2684 1.0841 -7.3176 23 1 3.7253 1.4334 -8.6549 24 1 5.4080 0.1454 -7.4759 25 1 3.2056 0.4398 -6.5047 26 6 3.8459 3.2331 1.5544 27 6 2.4299 2.9142 1.9402 28 8 1.9774 3.4303 2.9401 29 7 1.6439 2.0935 1.2425 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9957 0.7700 0.6065 36 1 3.8401 1.1085 -1.1369 37 1 4.5170 3.5243 -2.4162 38 1 1.4768 5.6327 -1.6014 39 1 -0.4555 6.8193 -4.0702 40 1 0.2670 7.7826 -2.7594 41 1 0.6673 8.1455 -4.4554 42 1 4.7942 5.3283 -5.7142 43 1 5.2859 4.3609 -4.3033 44 1 6.7064 2.5384 -7.1710 45 1 4.0268 4.2994 1.6905 46 1 4.5298 2.6664 2.1861 47 1 0.7525 1.9191 1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543539279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:59 Heat of formation + Delta-G solvation = -10.416524 kcal Electronic energy + Delta-G solvation = -29995.730752 eV Core-core repulsion = 25986.543985 eV Total energy + Delta-G solvation = -4009.186766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38372 -40.47396 -38.85752 -37.03723 -34.80194 -34.14057 -33.81756 -32.19634 -32.04986 -29.29474 -29.21091 -28.36194 -26.10177 -25.57941 -23.74384 -22.87138 -21.92593 -21.43068 -20.06285 -19.75670 -18.55227 -17.41516 -16.95346 -16.65276 -16.49247 -16.28564 -15.65669 -15.23807 -14.91329 -14.61724 -14.38053 -14.21013 -13.99603 -13.96297 -13.73565 -13.38456 -12.98024 -12.80593 -12.77638 -12.53711 -12.21459 -12.20080 -12.04970 -11.78164 -11.62563 -11.61264 -11.45574 -11.20052 -11.12698 -11.05408 -10.94917 -10.43401 -10.38576 -9.91279 -9.86867 -9.77185 -9.51123 -9.07326 -8.78055 -7.95983 -7.48477 -6.39232 -4.47976 2.16463 2.71947 2.73282 3.04053 3.11181 3.18912 3.21782 3.26252 3.55762 3.72196 4.17729 4.21793 4.24942 4.30687 4.51427 4.70459 4.84289 4.89007 4.94172 5.06861 5.15226 5.26083 5.33302 5.37174 5.45581 5.49872 5.60485 5.61989 5.67542 5.73210 5.88067 6.01059 6.01512 6.12978 6.15060 6.22802 6.38282 6.62927 6.76813 6.78516 6.99621 7.35845 7.46739 7.52593 7.57347 7.73977 7.85691 8.23143 8.25516 8.56870 8.66216 9.19818 10.67844 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.004272 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.238832 B = 6553.026994 C = 7958.875236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.135 3.865 4 H 0.079 0.921 5 C -0.124 4.124 6 C -0.109 4.109 7 H 0.113 0.887 8 C 0.518 3.482 9 O -0.503 6.503 10 N -0.637 5.637 11 C 0.300 3.700 12 C -0.294 4.294 13 C 0.050 3.950 14 C -0.062 4.062 15 N -0.285 5.285 16 N -0.344 5.344 17 C 0.256 3.744 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.117 4.117 27 C 0.537 3.463 28 O -0.564 6.564 29 N -0.707 5.707 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.416 0.584 38 H 0.160 0.840 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.269 0.731 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -5.780 13.255 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.030 3.970 4 H 0.097 0.903 5 C -0.162 4.162 6 C -0.130 4.130 7 H 0.131 0.869 8 C 0.303 3.697 9 O -0.376 6.376 10 N -0.283 5.283 11 C 0.078 3.922 12 C -0.326 4.326 13 C -0.114 4.114 14 C -0.121 4.121 15 N -0.110 5.110 16 N -0.129 5.129 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.157 4.157 27 C 0.325 3.675 28 O -0.443 6.443 29 N -0.359 5.359 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.253 0.747 38 H 0.178 0.822 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.509 -4.922 12.639 14.010 hybrid contribution -0.105 -1.487 -0.163 1.500 sum -3.614 -6.409 12.477 14.485 Atomic orbital electron populations 1.21798 0.95308 1.02100 1.02169 1.21907 0.96762 0.95248 1.03296 1.21047 0.94837 0.93696 0.87410 0.90271 1.21883 0.94681 0.94678 1.04957 1.21372 1.02105 0.94946 0.94622 0.86911 1.20445 0.84984 0.83039 0.81202 1.90696 1.26414 1.46957 1.73509 1.42804 1.32399 1.42020 1.11121 1.17930 0.94945 0.94700 0.84671 1.21262 1.01891 1.07122 1.02293 1.22034 0.97932 0.99441 0.92031 1.20019 0.93457 0.96355 1.02289 1.77364 1.03062 1.09090 1.21521 1.49350 1.25058 1.32119 1.06418 1.19616 0.80923 0.94317 0.91272 1.21325 0.98336 1.07984 1.30199 0.91744 1.24928 0.94626 0.98256 0.95805 1.69917 1.04550 1.39723 1.38507 0.86371 0.78353 0.81891 0.80172 1.20202 1.20835 1.19702 1.21530 0.94593 1.05174 0.94392 1.19754 0.88066 0.77269 0.82423 1.90734 1.74706 1.51456 1.27437 1.45452 1.18009 1.47488 1.24954 0.92101 0.92208 0.92783 0.90079 0.91129 0.89129 0.88557 0.74736 0.82220 0.91345 0.91160 0.91545 0.92595 0.93841 0.92134 0.87511 0.87302 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.76 37.16 0.36 -0.88 16 2 C -0.13 -1.04 5.58 -26.73 -0.15 -1.19 16 3 C 0.14 1.33 2.38 -68.38 -0.16 1.16 16 4 H 0.08 0.98 7.26 -51.93 -0.38 0.61 16 5 C -0.12 -1.01 4.89 -26.83 -0.13 -1.14 16 6 C -0.11 -1.03 3.06 -91.79 -0.28 -1.31 16 7 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 8 C 0.52 7.28 5.61 -10.99 -0.06 7.22 16 9 O -0.50 -8.59 11.72 5.55 0.07 -8.52 16 10 N -0.64 -10.11 5.42 -11.46 -0.06 -10.17 16 11 C 0.30 6.04 7.66 -153.15 -1.17 4.86 16 12 C -0.29 -5.88 9.58 -39.78 -0.38 -6.27 16 13 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 14 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 15 N -0.29 -6.52 12.56 33.65 0.42 -6.10 16 16 N -0.34 -7.79 3.60 -61.57 -0.22 -8.02 16 17 C 0.26 6.17 6.01 -5.20 -0.03 6.14 16 18 C -0.54 -13.90 9.39 -34.44 -0.32 -14.23 16 19 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 22 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.12 -1.19 5.21 -28.10 -0.15 -1.34 16 27 C 0.54 7.22 6.38 -11.87 -0.08 7.14 16 28 O -0.56 -9.86 17.78 5.56 0.10 -9.77 16 29 N -0.71 -8.03 4.91 -54.86 -0.27 -8.30 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 6.66 -51.93 -0.35 0.07 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.55 8.10 -51.92 -0.42 0.13 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.42 5.99 7.96 -40.82 -0.33 5.67 16 38 H 0.16 3.17 5.83 -52.49 -0.31 2.86 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 44 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.11 1.19 8.10 -51.92 -0.42 0.77 16 46 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.40 4.37 7.02 -40.82 -0.29 4.08 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -33.40 382.87 -8.42 -41.81 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.07 Total: 9.56 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.87 Total: 1.67 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.61 Total: -55.32 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.16 Total: -18.29 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.40 -8.42 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543539279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds