Wall clock time and date at job start Tue Mar 31 2020 19:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 H 1.08998 * 109.47134 * 55.00293 * 3 2 1 5 5 C 1.50705 * 109.46661 * 175.00159 * 3 2 1 6 6 O 1.21290 * 119.99967 * 120.00757 * 5 3 2 7 7 N 1.34776 * 119.99848 * 299.99980 * 5 3 2 8 8 C 1.39480 * 119.99801 * 180.02562 * 7 5 3 9 9 C 1.36111 * 126.21601 * 359.69303 * 8 7 5 10 10 C 1.39751 * 107.82699 * 179.89891 * 9 8 7 11 11 C 1.50700 * 125.83843 * 180.13406 * 10 9 8 12 12 N 1.30848 * 108.32356 * 0.36852 * 10 9 8 13 13 N 1.35258 * 126.21586 * 179.97438 * 8 7 5 14 14 C 1.46503 * 126.04684 * 359.97172 * 13 8 7 15 15 C 1.50699 * 109.47093 * 89.99668 * 14 13 8 16 16 H 1.08006 * 120.00258 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99970 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47415 * 89.99619 * 19 17 15 21 21 H 1.48499 * 109.46888 * 209.99903 * 19 17 15 22 22 H 1.48509 * 109.46773 * 329.99463 * 19 17 15 23 23 N 1.46496 * 109.47596 * 295.00099 * 3 2 1 24 24 C 1.46764 * 124.35106 * 120.00102 * 23 3 2 25 25 C 1.54484 * 105.47181 * 197.04087 * 24 23 3 26 26 C 1.54624 * 101.76286 * 334.58202 * 25 24 23 27 27 C 1.34424 * 124.34587 * 300.02781 * 23 3 2 28 28 O 1.21279 * 124.94294 * 359.30176 * 27 23 3 29 29 H 1.09000 * 109.47517 * 59.99661 * 1 2 3 30 30 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47137 * 299.99764 * 1 2 3 32 32 H 1.09000 * 109.46679 * 239.99964 * 2 1 3 33 33 H 1.09000 * 109.47074 * 120.00638 * 2 1 3 34 34 H 0.96996 * 120.00392 * 0.02562 * 7 5 3 35 35 H 1.08001 * 126.08224 * 0.02562 * 9 8 7 36 36 H 1.08999 * 109.47615 * 270.24445 * 11 10 9 37 37 H 1.08999 * 109.46918 * 30.24840 * 11 10 9 38 38 H 1.09003 * 109.47260 * 150.24321 * 11 10 9 39 39 H 1.08997 * 109.47010 * 209.99611 * 14 13 8 40 40 H 1.08998 * 109.46952 * 329.99211 * 14 13 8 41 41 H 0.96998 * 119.99761 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.24057 * 316.03952 * 24 23 3 43 43 H 1.08999 * 110.24524 * 78.03907 * 24 23 3 44 44 H 1.09000 * 110.96838 * 92.70823 * 25 24 23 45 45 H 1.08999 * 110.96319 * 216.46846 * 25 24 23 46 46 H 1.09000 * 110.48926 * 266.12016 * 26 25 24 47 47 H 1.09001 * 110.48194 * 143.48372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2217 1.9436 -0.7478 7 7 4.1297 0.8910 1.2031 8 6 5.5198 0.8930 1.3179 9 6 6.4003 1.4105 0.4181 10 6 7.6901 1.2073 0.9162 11 6 8.9719 1.6265 0.2437 12 7 7.5947 0.5863 2.0640 13 7 6.2379 0.3765 2.3411 14 6 5.6929 -0.2857 3.5289 15 6 5.5628 -1.7636 3.2648 16 1 5.8562 -2.1691 2.3078 17 6 5.0681 -2.5981 4.2446 18 7 4.7103 -2.1043 5.4099 19 14 4.9073 -4.4302 3.9176 20 1 6.1628 -5.1161 4.3155 21 1 3.7736 -4.9761 4.7061 22 1 4.6577 -4.6547 2.4709 23 7 1.6524 2.0975 -1.2517 24 6 0.8076 3.2949 -1.3328 25 6 0.3189 3.3561 -2.7970 26 6 1.4360 2.5823 -3.5347 27 6 2.0246 1.6788 -2.4737 28 8 2.7333 0.7195 -2.6932 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5862 0.4914 1.9000 35 1 6.1470 1.8940 -0.5138 36 1 9.3221 0.8228 -0.4041 37 1 8.7937 2.5218 -0.3520 38 1 9.7271 1.8382 1.0007 39 1 6.3626 -0.1252 4.3738 40 1 4.7120 0.1302 3.7588 41 1 4.3626 -2.6914 6.0993 42 1 -0.0414 3.2039 -0.6552 43 1 1.3898 4.1843 -1.0919 44 1 -0.6424 2.8547 -2.9087 45 1 0.2624 4.3871 -3.1464 46 1 2.1922 3.2709 -3.9117 47 1 1.0168 1.9916 -4.3492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569309434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:52 Heat of formation + Delta-G solvation = 8.472842 kcal Electronic energy + Delta-G solvation = -29864.731406 eV Core-core repulsion = 25856.363744 eV Total energy + Delta-G solvation = -4008.367662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14988 -40.45269 -38.82012 -36.41924 -35.05992 -34.62666 -33.72747 -32.03452 -31.19228 -29.24848 -28.57525 -27.73097 -26.89337 -25.99408 -22.95703 -22.51809 -22.12058 -21.80881 -19.88467 -19.56898 -18.67891 -17.29569 -17.07443 -16.78237 -16.34368 -15.97965 -15.59926 -14.94678 -14.91468 -14.47444 -14.40217 -14.00435 -13.94413 -13.75018 -13.41670 -13.13879 -12.95410 -12.81386 -12.75793 -12.70319 -12.46950 -12.09293 -11.98212 -11.79554 -11.74497 -11.54449 -11.41861 -11.29374 -11.09776 -11.04400 -10.87827 -10.34211 -10.29284 -9.91397 -9.79145 -9.66656 -9.48601 -8.78010 -8.70891 -7.87584 -7.38548 -6.32423 -4.40518 2.30017 2.45050 2.72525 3.02465 3.18132 3.18581 3.25003 3.30652 3.65442 3.82736 4.17125 4.22250 4.26197 4.52319 4.59299 4.70248 4.74295 4.88187 5.01017 5.10724 5.19611 5.26740 5.33799 5.40586 5.41470 5.52131 5.58040 5.67548 5.70224 5.82337 5.94022 6.07581 6.12103 6.18979 6.22856 6.26996 6.39955 6.47474 6.72014 6.85626 7.04180 7.06518 7.55549 7.60941 7.66339 7.81317 7.95046 8.20349 8.36090 8.65013 8.74295 9.27180 10.74624 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.004025 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.378489 B = 6954.330158 C = 8739.751242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.152 3.848 4 H 0.117 0.883 5 C 0.508 3.492 6 O -0.494 6.494 7 N -0.638 5.638 8 C 0.304 3.696 9 C -0.294 4.294 10 C 0.050 3.950 11 C -0.062 4.062 12 N -0.286 5.286 13 N -0.345 5.345 14 C 0.257 3.743 15 C -0.539 4.539 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.891 5.891 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.606 5.606 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.524 3.476 28 O -0.511 6.511 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.159 0.841 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.268 0.732 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 12.330 -12.331 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.045 3.955 4 H 0.135 0.865 5 C 0.292 3.708 6 O -0.366 6.366 7 N -0.286 5.286 8 C 0.081 3.919 9 C -0.326 4.326 10 C -0.114 4.114 11 C -0.120 4.120 12 N -0.112 5.112 13 N -0.131 5.131 14 C 0.139 3.861 15 C -0.578 4.578 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.529 5.529 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 N -0.342 5.342 24 C -0.019 4.019 25 C -0.167 4.167 26 C -0.194 4.194 27 C 0.312 3.688 28 O -0.385 6.385 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.177 0.823 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.530 11.541 -11.753 20.106 hybrid contribution -0.910 -0.957 -0.053 1.322 sum -12.440 10.584 -11.805 20.153 Atomic orbital electron populations 1.21690 0.94424 1.02266 1.01677 1.21965 0.97242 0.93731 1.05082 1.20758 0.90833 0.96191 0.87738 0.86499 1.20792 0.90583 0.78316 0.81086 1.90643 1.64139 1.43162 1.38667 1.42718 1.03946 1.58201 1.23740 1.17904 0.82424 0.99564 0.91959 1.21247 0.90139 1.17130 1.04053 1.22014 0.95789 0.99514 0.94116 1.20011 0.91997 1.00899 0.99124 1.77337 0.94122 1.22129 1.17570 1.49331 1.02527 1.43789 1.17415 1.19602 0.94117 0.92279 0.80057 1.21358 1.44217 0.91186 1.01007 0.91702 1.24920 0.94577 0.99556 0.94545 1.69918 1.42381 1.36149 1.04404 0.86373 0.78010 0.83901 0.78571 1.20200 1.20840 1.19620 1.47910 1.51863 1.29289 1.05105 1.22109 0.94176 0.87610 0.97988 1.22567 0.98482 1.01860 0.93825 1.22312 0.99449 0.99513 0.98138 1.20748 0.79487 0.84638 0.83972 1.90752 1.36015 1.28234 1.83458 0.92725 0.92067 0.92466 0.89463 0.89611 0.74873 0.82328 0.91328 0.91230 0.91575 0.92579 0.93896 0.92205 0.90227 0.91001 0.89985 0.89191 0.87798 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.80 37.16 0.36 -0.95 16 2 C -0.14 -1.73 5.30 -26.73 -0.14 -1.87 16 3 C 0.15 1.85 2.67 -69.08 -0.18 1.66 16 4 H 0.12 1.04 8.07 -51.93 -0.42 0.62 16 5 C 0.51 8.58 6.81 -10.98 -0.07 8.51 16 6 O -0.49 -9.83 11.99 -9.80 -0.12 -9.95 16 7 N -0.64 -11.65 5.28 -11.46 -0.06 -11.71 16 8 C 0.30 6.71 7.66 -153.15 -1.17 5.54 16 9 C -0.29 -6.42 9.58 -39.78 -0.38 -6.80 16 10 C 0.05 1.07 7.21 -82.45 -0.59 0.47 16 11 C -0.06 -0.98 10.44 36.01 0.38 -0.60 16 12 N -0.29 -6.91 12.56 33.65 0.42 -6.49 16 13 N -0.35 -8.33 3.60 -61.57 -0.22 -8.56 16 14 C 0.26 6.51 6.01 -5.19 -0.03 6.48 16 15 C -0.54 -14.70 9.39 -34.44 -0.32 -15.03 16 16 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 19 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 N -0.61 -6.77 2.08 -166.16 -0.35 -7.12 16 24 C 0.10 0.70 7.30 -3.12 -0.02 0.68 16 25 C -0.13 -0.67 7.18 -25.10 -0.18 -0.85 16 26 C -0.15 -1.30 6.86 -26.74 -0.18 -1.49 16 27 C 0.52 7.09 6.69 -10.86 -0.07 7.01 16 28 O -0.51 -9.49 15.33 -9.78 -0.15 -9.64 16 29 H 0.05 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.33 6.66 -51.93 -0.35 0.98 16 33 H 0.09 1.06 7.43 -51.93 -0.39 0.67 16 34 H 0.41 6.87 7.32 -40.82 -0.30 6.57 16 35 H 0.16 3.46 5.83 -52.49 -0.31 3.16 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -35.68 387.73 -8.80 -44.48 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.17 Total: 6.33 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.72 Total: 4.49 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.53 Total: -57.49 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.27 Total: -19.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.68 -8.80 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569309434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.957 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds