Wall clock time and date at job start Tue Mar 31 2020 19:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 H 1.08998 * 109.47134 * 55.00293 * 3 2 1 5 5 C 1.50705 * 109.46661 * 175.00159 * 3 2 1 6 6 O 1.21290 * 119.99967 * 120.00757 * 5 3 2 7 7 N 1.34776 * 119.99848 * 299.99980 * 5 3 2 8 8 C 1.39480 * 119.99801 * 180.02562 * 7 5 3 9 9 C 1.36111 * 126.21601 * 359.69303 * 8 7 5 10 10 C 1.39751 * 107.82699 * 179.89891 * 9 8 7 11 11 C 1.50700 * 125.83843 * 180.13406 * 10 9 8 12 12 N 1.30848 * 108.32356 * 0.36852 * 10 9 8 13 13 N 1.35258 * 126.21586 * 179.97438 * 8 7 5 14 14 C 1.46503 * 126.04684 * 359.97172 * 13 8 7 15 15 C 1.50699 * 109.47093 * 89.99668 * 14 13 8 16 16 H 1.08006 * 120.00258 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99970 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47415 * 89.99619 * 19 17 15 21 21 H 1.48499 * 109.46888 * 209.99903 * 19 17 15 22 22 H 1.48509 * 109.46773 * 329.99463 * 19 17 15 23 23 N 1.46496 * 109.47596 * 295.00099 * 3 2 1 24 24 C 1.46764 * 124.35106 * 120.00102 * 23 3 2 25 25 C 1.54484 * 105.47181 * 197.04087 * 24 23 3 26 26 C 1.54624 * 101.76286 * 334.58202 * 25 24 23 27 27 C 1.34424 * 124.34587 * 300.02781 * 23 3 2 28 28 O 1.21279 * 124.94294 * 359.30176 * 27 23 3 29 29 H 1.09000 * 109.47517 * 59.99661 * 1 2 3 30 30 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47137 * 299.99764 * 1 2 3 32 32 H 1.09000 * 109.46679 * 239.99964 * 2 1 3 33 33 H 1.09000 * 109.47074 * 120.00638 * 2 1 3 34 34 H 0.96996 * 120.00392 * 0.02562 * 7 5 3 35 35 H 1.08001 * 126.08224 * 0.02562 * 9 8 7 36 36 H 1.08999 * 109.47615 * 270.24445 * 11 10 9 37 37 H 1.08999 * 109.46918 * 30.24840 * 11 10 9 38 38 H 1.09003 * 109.47260 * 150.24321 * 11 10 9 39 39 H 1.08997 * 109.47010 * 209.99611 * 14 13 8 40 40 H 1.08998 * 109.46952 * 329.99211 * 14 13 8 41 41 H 0.96998 * 119.99761 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.24057 * 316.03952 * 24 23 3 43 43 H 1.08999 * 110.24524 * 78.03907 * 24 23 3 44 44 H 1.09000 * 110.96838 * 92.70823 * 25 24 23 45 45 H 1.08999 * 110.96319 * 216.46846 * 25 24 23 46 46 H 1.09000 * 110.48926 * 266.12016 * 26 25 24 47 47 H 1.09001 * 110.48194 * 143.48372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2217 1.9436 -0.7478 7 7 4.1297 0.8910 1.2031 8 6 5.5198 0.8930 1.3179 9 6 6.4003 1.4105 0.4181 10 6 7.6901 1.2073 0.9162 11 6 8.9719 1.6265 0.2437 12 7 7.5947 0.5863 2.0640 13 7 6.2379 0.3765 2.3411 14 6 5.6929 -0.2857 3.5289 15 6 5.5628 -1.7636 3.2648 16 1 5.8562 -2.1691 2.3078 17 6 5.0681 -2.5981 4.2446 18 7 4.7103 -2.1043 5.4099 19 14 4.9073 -4.4302 3.9176 20 1 6.1628 -5.1161 4.3155 21 1 3.7736 -4.9761 4.7061 22 1 4.6577 -4.6547 2.4709 23 7 1.6524 2.0975 -1.2517 24 6 0.8076 3.2949 -1.3328 25 6 0.3189 3.3561 -2.7970 26 6 1.4360 2.5823 -3.5347 27 6 2.0246 1.6788 -2.4737 28 8 2.7333 0.7195 -2.6932 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5862 0.4914 1.9000 35 1 6.1470 1.8940 -0.5138 36 1 9.3221 0.8228 -0.4041 37 1 8.7937 2.5218 -0.3520 38 1 9.7271 1.8382 1.0007 39 1 6.3626 -0.1252 4.3738 40 1 4.7120 0.1302 3.7588 41 1 4.3626 -2.6914 6.0993 42 1 -0.0414 3.2039 -0.6552 43 1 1.3898 4.1843 -1.0919 44 1 -0.6424 2.8547 -2.9087 45 1 0.2624 4.3871 -3.1464 46 1 2.1922 3.2709 -3.9117 47 1 1.0168 1.9916 -4.3492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569309434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:51 Heat of formation + Delta-G solvation = -13.984835 kcal Electronic energy + Delta-G solvation = -29865.705244 eV Core-core repulsion = 25856.363744 eV Total energy + Delta-G solvation = -4009.341500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.57423 -41.71269 -40.15825 -37.43993 -36.37007 -35.89647 -35.57228 -33.86022 -31.95825 -30.90092 -30.13254 -28.43172 -28.03801 -27.80899 -24.82516 -23.62538 -23.07308 -22.69059 -21.40951 -21.10396 -19.84801 -18.92804 -18.56184 -18.17834 -17.63551 -17.05525 -16.76453 -16.64538 -16.24434 -16.06339 -15.54256 -15.42952 -15.23623 -14.63194 -14.57607 -14.46458 -14.30509 -14.08741 -13.82563 -13.78823 -13.59648 -13.42555 -13.33355 -13.16445 -13.07769 -12.89518 -12.74650 -12.43020 -12.32968 -12.16639 -12.05708 -11.93081 -11.77725 -11.71618 -11.49153 -10.99149 -10.78606 -10.66804 -9.73300 -9.67367 -9.11555 -8.39034 -6.56057 0.73913 1.15925 1.33306 1.35723 1.46036 1.57694 1.71711 1.91728 2.00032 2.24137 2.34843 2.91244 3.27494 3.51674 3.69491 3.76020 3.78456 3.90102 4.11026 4.16301 4.22260 4.35093 4.41944 4.57943 4.67117 4.70464 4.72769 4.76264 4.80186 4.83147 4.84487 4.89556 4.90664 5.03570 5.10923 5.14549 5.15818 5.18770 5.28248 5.31874 5.48391 5.53237 5.74301 5.90928 6.09975 6.17603 6.23511 6.54007 6.89231 6.98292 7.15853 7.25400 8.67512 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.004025 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.378489 B = 6954.330158 C = 8739.751242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.157 3.843 4 H 0.160 0.840 5 C 0.503 3.497 6 O -0.526 6.526 7 N -0.636 5.636 8 C 0.302 3.698 9 C -0.310 4.310 10 C 0.059 3.941 11 C -0.060 4.060 12 N -0.329 5.329 13 N -0.365 5.365 14 C 0.273 3.727 15 C -0.558 4.558 16 H 0.042 0.958 17 C 0.033 3.967 18 N -0.910 5.910 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.276 1.276 23 N -0.604 5.604 24 C 0.094 3.906 25 C -0.113 4.113 26 C -0.151 4.151 27 C 0.505 3.495 28 O -0.577 6.577 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.421 0.579 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.276 0.724 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 13.514 -12.761 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.050 3.950 4 H 0.177 0.823 5 C 0.289 3.711 6 O -0.399 6.399 7 N -0.285 5.285 8 C 0.079 3.921 9 C -0.342 4.342 10 C -0.107 4.107 11 C -0.118 4.118 12 N -0.154 5.154 13 N -0.151 5.151 14 C 0.154 3.846 15 C -0.596 4.596 16 H 0.060 0.940 17 C -0.169 4.169 18 N -0.547 5.547 19 Si 0.789 3.211 20 H -0.202 1.202 21 H -0.188 1.188 22 H -0.201 1.201 23 N -0.338 5.338 24 C -0.026 4.026 25 C -0.151 4.151 26 C -0.191 4.191 27 C 0.295 3.705 28 O -0.456 6.456 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.259 0.741 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.082 12.776 -12.165 22.572 hybrid contribution -0.108 -1.259 0.028 1.264 sum -14.191 11.517 -12.137 21.939 Atomic orbital electron populations 1.21647 0.91471 1.02765 1.03264 1.21908 0.99669 0.93222 1.02879 1.20880 0.87095 0.97118 0.89934 0.82264 1.21889 0.92649 0.76755 0.79759 1.90613 1.65416 1.44440 1.39458 1.42931 1.02513 1.58456 1.24598 1.18293 0.84178 0.98385 0.91214 1.21397 0.90698 1.17969 1.04162 1.22860 0.97581 0.97255 0.92962 1.20215 0.89728 1.02324 0.99564 1.77282 0.94451 1.24273 1.19398 1.49177 1.03045 1.45066 1.17794 1.19245 0.93706 0.91683 0.79923 1.21375 1.45348 0.92462 1.00437 0.94015 1.25597 0.93791 1.03386 0.94153 1.69972 1.42160 1.37719 1.04890 0.85459 0.78433 0.78974 0.78238 1.20159 1.18833 1.20131 1.48148 1.51497 1.30126 1.03999 1.22512 0.94499 0.85667 0.99957 1.22623 0.97623 1.03032 0.91813 1.22359 1.00547 0.98977 0.97178 1.21744 0.78679 0.84281 0.85814 1.90708 1.39025 1.31190 1.84659 0.91916 0.92227 0.89932 0.93241 0.90343 0.74101 0.82374 0.89925 0.88763 0.90274 0.95263 0.93114 0.91503 0.87091 0.90560 0.88214 0.86500 0.87599 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.80 71.98 0.71 -1.45 16 2 C -0.14 -3.33 5.30 30.59 0.16 -3.17 16 3 C 0.16 3.65 2.67 44.25 0.12 3.77 16 4 H 0.16 2.33 8.07 -2.39 -0.02 2.31 16 5 C 0.50 17.26 6.81 87.66 0.60 17.86 16 6 O -0.53 -21.52 11.99 11.61 0.14 -21.38 16 7 N -0.64 -23.89 5.28 -308.55 -1.63 -25.52 16 8 C 0.30 13.81 7.66 131.32 1.01 14.82 16 9 C -0.31 -13.94 9.58 22.14 0.21 -13.73 16 10 C 0.06 2.52 7.21 43.07 0.31 2.83 16 11 C -0.06 -1.84 10.44 71.24 0.74 -1.10 16 12 N -0.33 -16.40 12.56 -47.45 -0.60 -17.00 16 13 N -0.37 -18.35 3.60 -348.71 -1.26 -19.61 16 14 C 0.27 14.37 6.01 85.63 0.51 14.88 16 15 C -0.56 -31.35 9.39 25.60 0.24 -31.11 16 16 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 17 C 0.03 1.77 5.46 84.65 0.46 2.23 16 18 N -0.91 -49.73 13.29 21.45 0.28 -49.45 16 19 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 N -0.60 -12.54 2.08 -798.20 -1.66 -14.20 16 24 C 0.09 0.93 7.30 86.83 0.63 1.56 16 25 C -0.11 -0.73 7.18 31.65 0.23 -0.50 16 26 C -0.15 -2.30 6.86 30.59 0.21 -2.09 16 27 C 0.50 13.62 6.69 87.90 0.59 14.21 16 28 O -0.58 -22.60 15.33 11.65 0.18 -22.42 16 29 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.58 6.66 -2.39 -0.02 1.57 16 33 H 0.08 1.96 7.43 -2.39 -0.02 1.94 16 34 H 0.42 14.31 7.32 -92.71 -0.68 13.63 16 35 H 0.16 7.12 5.83 -2.91 -0.02 7.10 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 2.54 7.50 -2.39 -0.02 2.52 16 41 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -82.74 387.73 4.53 -78.21 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.31 Total: 27.28 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.73 Total: 19.03 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -4.85 Total: -125.76 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: 0.32 Total: -43.81 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -82.74 4.53 -78.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569309434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.229 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds