Wall clock time and date at job start Tue Mar 31 2020 17:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 C 1.50701 * 109.47371 * 239.99965 * 2 1 3 5 5 N 1.31802 * 119.03077 * 59.73044 * 4 2 1 6 6 C 1.32261 * 120.89406 * 179.76298 * 5 4 2 7 7 C 1.39285 * 119.00911 * 0.50160 * 6 5 4 8 8 N 1.39782 * 120.87208 * 179.73009 * 7 6 5 9 9 C 1.34773 * 120.00294 * 325.42482 * 8 7 6 10 10 O 1.21379 * 119.99727 * 4.99119 * 9 8 7 11 11 C 1.49350 * 120.00275 * 184.99125 * 9 8 7 12 12 O 1.21363 * 120.00160 * 0.54097 * 11 9 8 13 13 N 1.34777 * 120.00125 * 180.53654 * 11 9 8 14 14 C 1.46498 * 120.00085 * 354.60864 * 13 11 9 15 15 C 1.50702 * 109.47209 * 83.66365 * 14 13 11 16 16 H 1.08009 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00309 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99835 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47580 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46975 * 120.00268 * 19 17 15 22 22 H 1.48499 * 109.46815 * 239.99927 * 19 17 15 23 23 C 1.46500 * 119.99793 * 174.60878 * 13 11 9 24 24 C 1.52996 * 109.47367 * 124.41487 * 23 13 11 25 25 C 1.53002 * 109.46993 * 244.41595 * 23 13 11 26 26 C 1.39292 * 118.25133 * 359.75506 * 7 6 5 27 27 N 1.31809 * 119.03061 * 240.00562 * 4 2 1 28 28 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47266 * 300.00416 * 1 2 3 30 30 H 1.09005 * 109.46952 * 60.00304 * 1 2 3 31 31 H 1.09006 * 109.47139 * 120.00215 * 2 1 3 32 32 H 1.09002 * 109.47265 * 60.00131 * 3 2 1 33 33 H 1.09009 * 109.46991 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47062 * 299.99638 * 3 2 1 35 35 H 1.08003 * 120.49161 * 180.23761 * 6 5 4 36 36 H 0.97001 * 119.99607 * 145.42452 * 8 7 6 37 37 H 1.08995 * 109.46842 * 203.66053 * 14 13 11 38 38 H 1.08997 * 109.47041 * 323.66477 * 14 13 11 39 39 H 0.97002 * 119.99977 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.47589 * 4.41297 * 23 13 11 41 41 H 1.08998 * 109.47276 * 59.99667 * 24 23 13 42 42 H 1.09000 * 109.47706 * 179.97438 * 24 23 13 43 43 H 1.08995 * 109.47004 * 300.00063 * 24 23 13 44 44 H 1.08996 * 109.47321 * 59.99818 * 25 23 13 45 45 H 1.09003 * 109.47409 * 180.02562 * 25 23 13 46 46 H 1.09006 * 109.46936 * 299.99501 * 25 23 13 47 47 H 1.07998 * 120.49337 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.6980 -0.2468 -2.4180 6 6 2.1220 -0.8387 -3.5222 7 6 2.9238 -1.9726 -3.4155 8 7 3.3890 -2.6321 -4.5568 9 6 2.6191 -2.6919 -5.6614 10 8 1.5616 -2.0972 -5.6970 11 6 3.0671 -3.4901 -6.8416 12 8 4.1197 -4.0927 -6.8024 13 7 2.3023 -3.5411 -7.9502 14 6 0.9789 -2.9127 -7.9567 15 6 1.1217 -1.4441 -8.2631 16 1 2.1004 -1.0210 -8.4353 17 6 0.0029 -0.6405 -8.3236 18 7 -1.1888 -1.1558 -8.1144 19 14 0.1801 1.1800 -8.7027 20 1 1.6153 1.5079 -8.8968 21 1 -0.5730 1.5033 -9.9411 22 1 -0.3615 1.9759 -7.5720 23 6 2.7944 -4.2250 -9.1487 24 6 1.7884 -5.2965 -9.5737 25 6 2.9670 -3.2099 -10.2804 26 6 3.2494 -2.4324 -2.1416 27 7 2.7888 -1.7803 -1.0873 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.8471 -0.4510 -4.4920 36 1 4.2659 -3.0466 -4.5538 37 1 0.3568 -3.3838 -8.7177 38 1 0.5132 -3.0363 -6.9790 39 1 -1.9759 -0.5904 -8.1566 40 1 3.7543 -4.6936 -8.9314 41 1 0.8286 -4.8280 -9.7911 42 1 2.1543 -5.8051 -10.4657 43 1 1.6655 -6.0196 -8.7675 44 1 3.6837 -2.4465 -9.9776 45 1 3.3328 -3.7188 -11.1723 46 1 2.0071 -2.7414 -10.4978 47 1 3.8684 -3.3085 -2.0169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581532128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:53 Heat of formation + Delta-G solvation = -13.494945 kcal Electronic energy + Delta-G solvation = -29610.591006 eV Core-core repulsion = 25601.270749 eV Total energy + Delta-G solvation = -4009.320257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35553 -40.19161 -38.33704 -36.35739 -35.81635 -34.37639 -33.60848 -32.85900 -31.33503 -29.83039 -27.29149 -27.20262 -26.78434 -25.43134 -24.72206 -23.49933 -22.99893 -20.98039 -20.60653 -19.21812 -17.86023 -17.35425 -16.73263 -16.62484 -16.59222 -16.17410 -15.27658 -14.91292 -14.77467 -14.41803 -14.30720 -14.05592 -13.79582 -13.60849 -13.45202 -13.22553 -12.94458 -12.50457 -12.36923 -12.18817 -12.05472 -11.84456 -11.79420 -11.58803 -11.33334 -11.11448 -11.05053 -10.97911 -10.92644 -10.87365 -10.73608 -10.69693 -10.61095 -10.26270 -9.99316 -9.64078 -9.21725 -8.79916 -8.40218 -8.29241 -7.92356 -6.07159 -4.08754 0.84985 1.16312 1.98552 2.65981 3.27288 3.36431 3.37880 3.64789 3.85807 3.86435 3.98082 4.24728 4.40939 4.57203 4.82669 4.93607 5.00723 5.07891 5.09205 5.29499 5.34054 5.48801 5.52927 5.59264 5.68423 5.74121 5.81503 5.82530 5.96481 5.98487 6.03172 6.11134 6.18484 6.22205 6.30562 6.30886 6.56849 6.63093 6.66938 6.86766 7.03696 7.16866 7.34047 7.39758 7.81554 8.00627 8.12351 8.17279 8.20933 8.53888 8.90980 9.53697 11.01779 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003927 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.940452 B = 7127.991440 C = 8862.142483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.141 4.141 4 C 0.293 3.707 5 N -0.490 5.490 6 C 0.152 3.848 7 C 0.050 3.950 8 N -0.653 5.653 9 C 0.489 3.511 10 O -0.427 6.427 11 C 0.510 3.490 12 O -0.562 6.562 13 N -0.551 5.551 14 C 0.226 3.774 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.070 3.930 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.282 1.282 23 C 0.133 3.867 24 C -0.160 4.160 25 C -0.155 4.155 26 C 0.121 3.879 27 N -0.502 5.502 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.188 0.812 36 H 0.420 0.580 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -2.444 9.422 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 C -0.199 4.199 4 C 0.025 3.975 5 N -0.203 5.203 6 C -0.017 4.017 7 C -0.050 4.050 8 N -0.303 5.303 9 C 0.270 3.730 10 O -0.293 6.293 11 C 0.292 3.708 12 O -0.444 6.444 13 N -0.282 5.282 14 C 0.108 3.892 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.132 4.132 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.208 1.208 23 C 0.029 3.971 24 C -0.217 4.217 25 C -0.213 4.213 26 C -0.048 4.048 27 N -0.215 5.215 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.205 0.795 36 H 0.258 0.742 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.346 -1.846 10.090 12.062 hybrid contribution 0.734 0.349 -1.110 1.375 sum 7.080 -1.497 8.980 11.533 Atomic orbital electron populations 1.21807 0.93194 1.02193 1.02828 1.19877 0.96487 0.95613 0.92206 1.21796 1.00814 0.94477 1.02804 1.23093 0.91091 0.89952 0.93328 1.68252 1.21664 1.32086 0.98296 1.23802 0.90764 0.88477 0.98632 1.19591 1.01761 0.95138 0.88510 1.43083 1.21138 1.55533 1.10506 1.20592 0.85118 0.83346 0.83898 1.90999 1.20383 1.38940 1.79023 1.19574 0.84623 0.82259 0.84349 1.90654 1.24180 1.46626 1.82907 1.48388 1.19512 1.50464 1.09797 1.19950 0.76471 0.92841 0.99961 1.21197 0.93065 0.92785 1.47875 0.92703 1.24783 0.95119 0.98194 0.95127 1.69913 0.97856 1.35712 1.49275 0.86597 0.78091 0.85718 0.77948 1.19949 1.21081 1.20819 1.21056 0.98132 0.92963 0.84909 1.22130 1.00475 0.98203 1.00926 1.22092 1.03788 0.98838 0.96557 1.23055 0.97515 0.98065 0.86139 1.68175 1.11355 1.08507 1.33482 0.92800 0.91835 0.91220 0.88951 0.91836 0.92918 0.91311 0.79507 0.74249 0.94460 0.91985 0.92866 0.89240 0.91175 0.91894 0.92777 0.92765 0.92721 0.90313 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.08 37.16 0.34 -1.23 16 2 C -0.02 -0.25 3.25 -91.77 -0.30 -0.55 16 3 C -0.14 -1.45 9.09 37.16 0.34 -1.11 16 4 C 0.29 4.32 6.34 -157.18 -1.00 3.32 16 5 N -0.49 -8.15 9.79 -10.56 -0.10 -8.25 16 6 C 0.15 2.63 9.98 -16.98 -0.17 2.46 16 7 C 0.05 0.76 6.35 -83.45 -0.53 0.23 16 8 N -0.65 -9.79 5.35 -10.11 -0.05 -9.84 16 9 C 0.49 9.24 7.59 -11.63 -0.09 9.15 16 10 O -0.43 -9.46 9.59 5.47 0.05 -9.40 16 11 C 0.51 9.99 7.67 -11.63 -0.09 9.90 16 12 O -0.56 -10.93 15.82 5.49 0.09 -10.84 16 13 N -0.55 -11.07 2.37 -168.02 -0.40 -11.47 16 14 C 0.23 5.29 4.12 -5.19 -0.02 5.27 16 15 C -0.51 -13.03 6.81 -34.44 -0.23 -13.26 16 16 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 17 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.26 3.25 -67.93 -0.22 2.04 16 24 C -0.16 -2.38 9.10 37.16 0.34 -2.04 16 25 C -0.15 -2.54 8.91 37.16 0.33 -2.21 16 26 C 0.12 1.59 11.26 -16.98 -0.19 1.40 16 27 N -0.50 -7.18 10.29 -10.56 -0.11 -7.29 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 31 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 35 H 0.19 3.62 6.29 -52.48 -0.33 3.29 16 36 H 0.42 5.24 8.31 -40.82 -0.34 4.90 16 37 H 0.04 0.91 6.21 -51.93 -0.32 0.58 16 38 H 0.06 1.61 5.83 -51.93 -0.30 1.30 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 41 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.46 7.27 -51.93 -0.38 1.08 16 47 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -29.99 386.39 -7.55 -37.54 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.97 Total: 6.78 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.59 Total: 15.14 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.07 Total: -61.04 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.14 Total: -20.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.99 -7.55 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581532128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.042 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds