Wall clock time and date at job start Tue Mar 31 2020 19:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 H 1.09000 * 109.47623 * 305.00862 * 3 2 1 5 5 N 1.46507 * 109.46850 * 65.00316 * 3 2 1 6 6 C 1.34769 * 120.00057 * 205.00314 * 5 3 2 7 7 O 1.21363 * 120.00278 * 359.97438 * 6 5 3 8 8 C 1.49351 * 119.99838 * 180.02562 * 6 5 3 9 9 O 1.21383 * 119.99897 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99645 * 180.27494 * 8 6 5 11 11 C 1.39932 * 119.99544 * 179.72660 * 10 8 6 12 12 C 1.40455 * 125.98227 * 359.70504 * 11 10 8 13 13 C 1.35214 * 107.86662 * 179.89124 * 12 11 10 14 14 C 1.50705 * 126.06347 * 180.13511 * 13 12 11 15 15 N 1.34994 * 107.87788 * 0.37482 * 13 12 11 16 16 C 1.46499 * 125.97263 * 179.73744 * 15 13 12 17 17 C 1.50698 * 109.47467 * 270.00296 * 16 15 13 18 18 H 1.07998 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99884 * 179.97438 * 17 16 15 20 20 N 1.31524 * 120.00122 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00232 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47450 * 89.99987 * 21 19 17 23 23 H 1.48503 * 109.47210 * 209.99629 * 21 19 17 24 24 H 1.48493 * 109.47248 * 329.99753 * 21 19 17 25 25 N 1.31275 * 125.97830 * 180.02562 * 11 10 8 26 26 C 1.52994 * 109.47287 * 184.99914 * 3 2 1 27 27 C 1.53008 * 117.50217 * 248.75055 * 26 3 2 28 28 C 1.52997 * 117.49941 * 180.08965 * 26 3 2 29 29 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46897 * 299.99091 * 1 2 3 31 31 H 1.08994 * 109.47189 * 59.99590 * 1 2 3 32 32 H 1.09001 * 109.46897 * 240.00909 * 2 1 3 33 33 H 1.08998 * 109.47635 * 120.00294 * 2 1 3 34 34 H 0.97001 * 119.99590 * 24.99525 * 5 3 2 35 35 H 0.97001 * 120.00485 * 359.71515 * 10 8 6 36 36 H 1.08000 * 126.06682 * 0.02562 * 12 11 10 37 37 H 1.09007 * 109.46752 * 270.28430 * 14 13 12 38 38 H 1.09000 * 109.47151 * 30.27775 * 14 13 12 39 39 H 1.09000 * 109.47425 * 150.28215 * 14 13 12 40 40 H 1.09000 * 109.47034 * 30.00255 * 16 15 13 41 41 H 1.08995 * 109.46773 * 149.99944 * 16 15 13 42 42 H 0.96990 * 120.00013 * 179.97438 * 20 19 17 43 43 H 1.08999 * 115.54978 * 34.42542 * 26 3 2 44 44 H 1.08995 * 117.49731 * 0.02562 * 27 26 3 45 45 H 1.08993 * 117.49626 * 145.02065 * 27 26 3 46 46 H 1.08998 * 117.50056 * 214.98305 * 28 26 3 47 47 H 1.09002 * 117.50054 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 1.5256 3.4383 1.2998 7 8 1.7328 4.1033 0.3059 8 6 1.1311 4.1059 2.5762 9 8 0.9243 3.4408 3.5703 10 7 0.9988 5.4464 2.6225 11 6 0.6236 6.0714 3.8170 12 6 0.3496 5.4273 5.0347 13 6 0.0268 6.3761 5.9424 14 6 -0.3381 6.1364 7.3848 15 7 0.0843 7.5758 5.3262 16 6 -0.1979 8.8744 5.9428 17 6 -1.6618 9.1968 5.7875 18 1 -2.3164 8.5039 5.2799 19 6 -2.1653 10.3763 6.2936 20 7 -3.4428 10.6580 6.1576 21 14 -1.0329 11.5751 7.1710 22 1 -0.4639 12.5299 6.1861 23 1 -1.8030 12.3228 8.1972 24 1 0.0684 10.8258 7.8272 25 7 0.4604 7.3619 3.9939 26 6 3.5648 1.4444 -0.1257 27 6 4.3734 1.9001 1.0906 28 6 4.2706 2.8017 -0.1422 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.4871 1.5659 2.0463 35 1 1.1638 5.9779 1.8281 36 1 0.3915 4.3633 5.2147 37 1 -1.4151 5.9898 7.4675 38 1 0.1784 5.2476 7.7474 39 1 -0.0417 6.9982 7.9827 40 1 0.0553 8.8362 7.0023 41 1 0.3978 9.6455 5.4545 42 1 -3.7971 11.4876 6.5139 43 1 3.9867 0.6502 -0.7417 44 1 3.8191 2.1982 1.9805 45 1 5.3274 1.4061 1.2745 46 1 5.1570 2.9004 -0.7687 47 1 3.6487 3.6934 -0.0631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595173336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:56 Heat of formation + Delta-G solvation = 17.182706 kcal Electronic energy + Delta-G solvation = -28533.770122 eV Core-core repulsion = 24525.780148 eV Total energy + Delta-G solvation = -4007.989974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.59388 -41.83209 -40.20652 -38.45276 -36.66727 -35.71168 -35.25453 -33.39452 -33.24167 -32.85016 -29.36059 -28.35129 -27.94981 -26.29573 -24.35850 -23.41484 -22.66946 -22.60369 -21.40624 -21.06673 -20.96776 -19.25084 -19.17733 -18.21139 -17.76348 -17.56235 -17.00055 -16.74992 -16.63316 -16.19347 -15.74563 -15.43279 -15.17782 -14.96944 -14.81045 -14.60627 -14.52019 -13.91883 -13.81528 -13.79269 -13.65599 -13.32726 -13.28843 -13.04465 -12.73973 -12.60264 -12.52627 -12.31100 -12.26652 -12.24572 -11.83870 -11.82617 -11.61942 -11.54985 -11.25511 -10.90832 -10.86847 -10.77563 -10.25043 -9.69753 -9.23311 -8.41114 -6.52558 0.01081 0.81061 1.03442 1.34940 1.37628 1.46645 1.67420 1.77593 2.20561 2.26079 2.52124 2.89057 2.91528 3.20899 3.60878 3.75710 3.89543 4.03397 4.04041 4.20875 4.24156 4.35537 4.38015 4.49181 4.54742 4.62039 4.73619 4.74377 4.80755 4.80962 4.87076 4.88397 4.98455 5.03456 5.08644 5.14350 5.15967 5.22037 5.24385 5.31151 5.37265 5.43013 5.72290 5.80882 5.95304 6.14663 6.32440 6.50845 6.54093 6.78614 6.87337 7.11271 8.75536 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002265 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.064912 B =12356.550629 C =12544.998605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C 0.169 3.831 4 H 0.086 0.914 5 N -0.674 5.674 6 C 0.524 3.476 7 O -0.526 6.526 8 C 0.514 3.486 9 O -0.506 6.506 10 N -0.601 5.601 11 C 0.267 3.733 12 C -0.292 4.292 13 C 0.093 3.907 14 C -0.085 4.085 15 N -0.338 5.338 16 C 0.239 3.761 17 C -0.551 4.551 18 H 0.024 0.976 19 C 0.021 3.979 20 N -0.937 5.937 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.232 1.232 25 N -0.351 5.351 26 C -0.156 4.156 27 C -0.177 4.177 28 C -0.204 4.204 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.421 0.579 35 H 0.428 0.572 36 H 0.176 0.824 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.274 0.726 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.221 -23.288 -8.231 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C 0.066 3.934 4 H 0.104 0.896 5 N -0.327 5.327 6 C 0.304 3.696 7 O -0.403 6.403 8 C 0.295 3.705 9 O -0.379 6.379 10 N -0.250 5.250 11 C 0.013 3.987 12 C -0.322 4.322 13 C -0.037 4.037 14 C -0.143 4.143 15 N -0.121 5.121 16 C 0.120 3.880 17 C -0.589 4.589 18 H 0.042 0.958 19 C -0.178 4.178 20 N -0.576 5.576 21 Si 0.772 3.228 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.154 1.154 25 N -0.181 5.181 26 C -0.175 4.175 27 C -0.215 4.215 28 C -0.241 4.241 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.259 0.741 35 H 0.266 0.734 36 H 0.193 0.807 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.155 0.845 44 H 0.100 0.900 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.104 -21.967 -8.724 28.050 hybrid contribution -0.359 0.521 0.314 0.706 sum 14.745 -21.446 -8.410 27.352 Atomic orbital electron populations 1.21828 0.95602 1.02548 1.01622 1.21775 0.95963 0.92808 1.05038 1.20899 0.92630 0.94706 0.85135 0.89608 1.45827 1.66362 1.04789 1.15759 1.19412 0.78873 0.84388 0.86976 1.90749 1.49269 1.64578 1.35746 1.20488 0.78410 0.81665 0.89953 1.90689 1.47454 1.63731 1.36028 1.42129 1.65127 1.07009 1.10744 1.19207 1.00526 0.90841 0.88096 1.21480 1.18777 1.01333 0.90643 1.21825 0.98598 0.84781 0.98453 1.20544 1.02965 1.04381 0.86388 1.48515 1.50638 1.07613 1.05304 1.19841 0.95703 0.78170 0.94319 1.21233 0.92794 1.05898 1.38960 0.95769 1.25835 0.96816 0.99243 0.95949 1.70033 1.15109 1.25956 1.46457 0.85681 0.79323 0.78938 0.78878 1.19241 1.19912 1.15442 1.77241 1.27874 1.14894 0.98084 1.22871 0.93094 0.98904 1.02629 1.22980 1.02089 1.04097 0.92294 1.23317 1.03412 0.95271 1.02097 0.91111 0.93545 0.93058 0.87979 0.89733 0.74102 0.73360 0.80684 0.90218 0.86952 0.90344 0.90388 0.93371 0.91716 0.84475 0.90050 0.87580 0.88305 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.80 71.98 0.71 -0.84 16 2 C -0.12 -0.87 5.46 30.59 0.17 -0.70 16 3 C 0.17 2.16 2.43 44.99 0.11 2.27 16 4 H 0.09 1.38 7.58 -2.39 -0.02 1.36 16 5 N -0.67 -10.92 3.06 -443.97 -1.36 -12.28 16 6 C 0.52 12.09 6.72 87.24 0.59 12.68 16 7 O -0.53 -14.03 13.50 -3.29 -0.04 -14.08 16 8 C 0.51 14.48 7.85 87.24 0.69 15.16 16 9 O -0.51 -15.17 13.60 -3.35 -0.05 -15.22 16 10 N -0.60 -19.47 5.43 -308.89 -1.68 -21.15 16 11 C 0.27 10.72 8.10 133.40 1.08 11.80 16 12 C -0.29 -11.19 9.51 22.11 0.21 -10.98 16 13 C 0.09 3.69 6.92 41.38 0.29 3.97 16 14 C -0.08 -2.54 10.11 71.24 0.72 -1.82 16 15 N -0.34 -15.52 3.59 -338.45 -1.22 -16.74 16 16 C 0.24 11.27 5.06 85.63 0.43 11.71 16 17 C -0.55 -31.45 9.94 25.60 0.25 -31.19 16 18 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 19 C 0.02 1.20 5.47 84.65 0.46 1.66 16 20 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 21 Si 0.95 40.59 27.47 68.60 1.88 42.47 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 25 N -0.35 -16.19 12.59 -54.54 -0.69 -16.87 16 26 C -0.16 -1.92 5.70 -10.79 -0.06 -1.99 16 27 C -0.18 -2.62 9.74 30.62 0.30 -2.32 16 28 C -0.20 -3.56 9.82 30.62 0.30 -3.26 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.42 5.84 8.07 -92.71 -0.75 5.09 16 35 H 0.43 12.82 8.29 -92.71 -0.77 12.05 16 36 H 0.18 6.15 5.91 -2.91 -0.02 6.13 16 37 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.24 7.07 -2.39 -0.02 2.23 16 40 H 0.08 3.24 6.09 -2.39 -0.01 3.22 16 41 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 42 H 0.27 15.32 8.31 -92.72 -0.77 14.55 16 43 H 0.14 1.07 8.11 -2.39 -0.02 1.05 16 44 H 0.08 1.41 6.67 -2.39 -0.02 1.39 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 46 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.09 2.09 5.01 -2.39 -0.01 2.08 16 Total: -1.00 -73.33 386.25 2.84 -70.49 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.55 Total: 33.91 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.24 Total: 6.16 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -4.64 Total: -123.73 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.09 Total: -29.29 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.88 Total: 42.47 kcal Total: -73.33 2.84 -70.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595173336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.668 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds