Wall clock time and date at job start Tue Mar 31 2020 19:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 N 1.46497 * 109.47007 * 295.00479 * 3 2 1 6 6 C 1.34773 * 120.00139 * 85.00157 * 5 3 2 7 7 O 1.21355 * 120.00354 * 359.97438 * 6 5 3 8 8 C 1.49352 * 119.99929 * 179.97438 * 6 5 3 9 9 O 1.21386 * 119.99951 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99793 * 179.97438 * 8 6 5 11 11 C 1.39935 * 119.99599 * 180.02562 * 10 8 6 12 12 C 1.40455 * 125.98265 * 359.71667 * 11 10 8 13 13 C 1.35217 * 107.86992 * 179.89023 * 12 11 10 14 14 C 1.50695 * 126.06311 * 180.13734 * 13 12 11 15 15 N 1.34992 * 107.87070 * 0.37083 * 13 12 11 16 16 C 1.46508 * 125.96546 * 179.73130 * 15 13 12 17 17 C 1.50700 * 109.46973 * 270.01516 * 16 15 13 18 18 H 1.08003 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47296 * 59.99571 * 21 19 17 23 23 H 1.48500 * 109.47119 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46960 * 299.99364 * 21 19 17 25 25 N 1.31278 * 125.97633 * 180.02562 * 11 10 8 26 26 C 1.52996 * 109.47102 * 175.00294 * 3 2 1 27 27 C 1.52999 * 117.49668 * 248.74935 * 26 3 2 28 28 C 1.53001 * 117.49904 * 180.09004 * 26 3 2 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 33 33 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 34 34 H 0.97001 * 119.99940 * 264.99615 * 5 3 2 35 35 H 0.96999 * 120.00205 * 0.02562 * 10 8 6 36 36 H 1.08002 * 126.06607 * 0.04115 * 12 11 10 37 37 H 1.08999 * 109.47310 * 270.27550 * 14 13 12 38 38 H 1.08994 * 109.47264 * 30.27434 * 14 13 12 39 39 H 1.09003 * 109.47180 * 150.27660 * 14 13 12 40 40 H 1.08989 * 109.47029 * 30.02064 * 16 15 13 41 41 H 1.09006 * 109.46491 * 150.01753 * 16 15 13 42 42 H 0.96999 * 120.00167 * 180.02562 * 20 19 17 43 43 H 1.08999 * 115.55229 * 34.41257 * 26 3 2 44 44 H 1.09004 * 117.50164 * 0.02562 * 27 26 3 45 45 H 1.09005 * 117.50063 * 145.01790 * 27 26 3 46 46 H 1.08998 * 117.49830 * 214.97533 * 28 26 3 47 47 H 1.08999 * 117.49605 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3401 2.6320 -0.4337 8 6 0.0401 3.3327 -2.6428 9 8 0.8156 3.3656 -3.5760 10 7 -1.1774 3.8991 -2.7580 11 6 -1.5476 4.5248 -3.9537 12 6 -0.7519 4.6403 -5.1053 13 6 -1.4679 5.3065 -6.0392 14 6 -1.0056 5.6528 -7.4310 15 7 -2.6682 5.6108 -5.5017 16 6 -3.7509 6.3372 -6.1698 17 6 -3.5949 7.8147 -5.9178 18 1 -2.7713 8.1766 -5.3201 19 6 -4.5034 8.7046 -6.4503 20 7 -5.5060 8.2640 -7.1785 21 14 -4.3096 10.5362 -6.1384 22 1 -3.0026 10.9940 -6.6744 23 1 -5.4072 11.2724 -6.8156 24 1 -4.3648 10.7981 -4.6777 25 7 -2.6973 5.1114 -4.1933 26 6 3.5648 1.4444 0.1256 27 6 4.1655 1.9736 1.4294 28 6 4.2703 2.8019 0.1464 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2718 2.1233 -1.9978 35 1 -1.7969 3.8732 -2.0121 36 1 0.2526 4.2619 -5.2248 37 1 -0.5131 6.6251 -7.4190 38 1 -0.3046 4.8948 -7.7802 39 1 -1.8649 5.6890 -8.1008 40 1 -3.7098 6.1451 -7.2419 41 1 -4.7105 6.0009 -5.7770 42 1 -6.1450 8.8901 -7.5535 43 1 4.0780 0.6179 -0.3658 44 1 3.4744 2.3201 2.1979 45 1 5.0742 1.4956 1.7955 46 1 5.2478 2.8683 -0.3312 47 1 3.6481 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595173337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:00 Heat of formation + Delta-G solvation = 28.473380 kcal Electronic energy + Delta-G solvation = -28274.174053 eV Core-core repulsion = 24266.673680 eV Total energy + Delta-G solvation = -4007.500374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19443 -40.44277 -39.01475 -37.87605 -35.42847 -34.70630 -33.39971 -32.58841 -31.51759 -30.90768 -27.81513 -26.87406 -26.43759 -24.97801 -23.00487 -22.72317 -22.06917 -21.20302 -20.84073 -19.91588 -19.52087 -17.94181 -17.17559 -16.73692 -16.53021 -16.07623 -15.92496 -15.46246 -15.23055 -14.85986 -14.74205 -14.34286 -14.25241 -14.00682 -13.35952 -13.18028 -13.09749 -12.59384 -12.51642 -12.36651 -12.25320 -12.07056 -11.95057 -11.80981 -11.49146 -11.44756 -11.43344 -11.14001 -11.09134 -10.86250 -10.80700 -10.63413 -10.56750 -10.26383 -9.96906 -9.60803 -9.55485 -9.42203 -8.65794 -8.03762 -7.57152 -6.27589 -4.35342 1.20976 2.02677 2.64230 3.02142 3.07114 3.22458 3.26435 3.30638 3.46554 3.65958 3.87572 4.01609 4.27838 4.36946 4.40727 4.55354 4.65353 4.82207 4.91826 5.06358 5.09440 5.23529 5.32489 5.36725 5.46710 5.51937 5.62651 5.68652 5.72308 5.73380 5.83288 5.84046 6.03134 6.06096 6.10020 6.17674 6.33113 6.37188 6.54852 6.86297 6.95223 7.01592 7.28814 7.42022 7.64230 7.67372 7.85644 7.94873 7.98238 8.55317 8.71175 9.31037 10.79836 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002174 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.153929 B =12877.732598 C =13021.655953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.174 3.826 4 H 0.094 0.906 5 N -0.692 5.692 6 C 0.516 3.484 7 O -0.512 6.512 8 C 0.510 3.490 9 O -0.498 6.498 10 N -0.599 5.599 11 C 0.257 3.743 12 C -0.289 4.289 13 C 0.093 3.907 14 C -0.084 4.084 15 N -0.312 5.312 16 C 0.258 3.742 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.891 5.891 21 Si 0.907 3.093 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.311 5.311 26 C -0.172 4.172 27 C -0.167 4.167 28 C -0.173 4.173 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.269 0.731 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.197 -15.292 11.893 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.070 3.930 4 H 0.111 0.889 5 N -0.346 5.346 6 C 0.297 3.703 7 O -0.387 6.387 8 C 0.290 3.710 9 O -0.371 6.371 10 N -0.247 5.247 11 C 0.005 3.995 12 C -0.319 4.319 13 C -0.039 4.039 14 C -0.142 4.142 15 N -0.095 5.095 16 C 0.140 3.860 17 C -0.576 4.576 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.200 1.200 25 N -0.142 5.142 26 C -0.190 4.190 27 C -0.204 4.204 28 C -0.210 4.210 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.775 -14.882 12.224 25.540 hybrid contribution 0.648 0.847 -0.106 1.072 sum 17.423 -14.035 12.119 25.444 Atomic orbital electron populations 1.21841 0.94662 1.01056 1.03084 1.21941 0.97115 0.95260 1.02622 1.20728 0.91821 0.93782 0.86663 0.88851 1.45774 1.15721 1.55654 1.17426 1.19839 0.82983 0.79639 0.87886 1.90795 1.50693 1.57599 1.39598 1.19984 0.82144 0.80327 0.88526 1.90713 1.50526 1.56679 1.39221 1.42008 1.15959 1.52581 1.14168 1.18895 0.94291 0.99145 0.87187 1.21230 1.03401 1.14936 0.92378 1.21084 0.87260 0.98427 0.97096 1.20344 1.01687 1.02166 0.90050 1.49079 1.13039 1.40077 1.07295 1.19737 0.83392 0.90837 0.92023 1.21261 1.12518 0.89968 1.33831 0.91781 1.24923 0.94563 0.99746 0.94508 1.69906 1.14017 1.35625 1.33355 0.86402 0.77885 0.83581 0.78748 1.19926 1.20935 1.19959 1.77336 1.18957 1.19586 0.98277 1.22557 0.93856 0.99064 1.03539 1.23006 1.02883 1.03556 0.90999 1.22973 1.02195 0.94499 1.01309 0.91935 0.92615 0.93190 0.91523 0.90646 0.74968 0.74038 0.82221 0.90311 0.90734 0.90754 0.92641 0.92870 0.92156 0.86914 0.88434 0.88336 0.88330 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.51 37.16 0.32 -1.06 16 2 C -0.13 -0.93 5.59 -26.73 -0.15 -1.08 16 3 C 0.17 1.31 2.45 -67.93 -0.17 1.14 16 4 H 0.09 0.82 7.34 -51.93 -0.38 0.44 16 5 N -0.69 -6.27 4.90 -54.27 -0.27 -6.54 16 6 C 0.52 6.21 6.45 -11.63 -0.08 6.14 16 7 O -0.51 -6.88 13.61 5.49 0.07 -6.81 16 8 C 0.51 7.45 7.85 -11.63 -0.09 7.36 16 9 O -0.50 -7.92 13.60 5.47 0.07 -7.84 16 10 N -0.60 -9.81 5.43 -11.58 -0.06 -9.87 16 11 C 0.26 5.21 8.10 -154.54 -1.25 3.96 16 12 C -0.29 -5.73 9.51 -39.82 -0.38 -6.11 16 13 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 14 C -0.08 -1.39 10.11 36.00 0.36 -1.02 16 15 N -0.31 -7.32 3.59 -58.32 -0.21 -7.53 16 16 C 0.26 6.54 5.99 -5.19 -0.03 6.51 16 17 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 18 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 21 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.31 -7.18 12.60 31.41 0.40 -6.78 16 26 C -0.17 -0.98 5.22 -90.62 -0.47 -1.46 16 27 C -0.17 -0.88 10.18 -26.69 -0.27 -1.16 16 28 C -0.17 -1.04 10.13 -26.69 -0.27 -1.31 16 29 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 30 H 0.05 0.62 5.64 -51.93 -0.29 0.33 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.41 3.39 8.07 -40.82 -0.33 3.06 16 35 H 0.42 6.28 8.29 -40.82 -0.34 5.95 16 36 H 0.16 2.98 5.91 -52.49 -0.31 2.67 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 40 H 0.06 1.38 7.04 -51.94 -0.37 1.02 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.11 0.54 8.11 -51.93 -0.42 0.12 16 44 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -30.98 392.53 -8.81 -39.79 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.98 Total: 7.89 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.47 Total: -0.08 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.59 Total: -54.87 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.15 Total: -14.65 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.98 -8.81 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595173337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.262 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds