Wall clock time and date at job start Tue Mar 31 2020 19:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00049 * 3 2 1 5 5 N 1.46497 * 109.47007 * 295.00479 * 3 2 1 6 6 C 1.34773 * 120.00139 * 85.00157 * 5 3 2 7 7 O 1.21355 * 120.00354 * 359.97438 * 6 5 3 8 8 C 1.49352 * 119.99929 * 179.97438 * 6 5 3 9 9 O 1.21386 * 119.99951 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99793 * 179.97438 * 8 6 5 11 11 C 1.39935 * 119.99599 * 180.02562 * 10 8 6 12 12 C 1.40455 * 125.98265 * 359.71667 * 11 10 8 13 13 C 1.35217 * 107.86992 * 179.89023 * 12 11 10 14 14 C 1.50695 * 126.06311 * 180.13734 * 13 12 11 15 15 N 1.34992 * 107.87070 * 0.37083 * 13 12 11 16 16 C 1.46508 * 125.96546 * 179.73130 * 15 13 12 17 17 C 1.50700 * 109.46973 * 270.01516 * 16 15 13 18 18 H 1.08003 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99919 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47296 * 59.99571 * 21 19 17 23 23 H 1.48500 * 109.47119 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46960 * 299.99364 * 21 19 17 25 25 N 1.31278 * 125.97633 * 180.02562 * 11 10 8 26 26 C 1.52996 * 109.47102 * 175.00294 * 3 2 1 27 27 C 1.52999 * 117.49668 * 248.74935 * 26 3 2 28 28 C 1.53001 * 117.49904 * 180.09004 * 26 3 2 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 33 33 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 34 34 H 0.97001 * 119.99940 * 264.99615 * 5 3 2 35 35 H 0.96999 * 120.00205 * 0.02562 * 10 8 6 36 36 H 1.08002 * 126.06607 * 0.04115 * 12 11 10 37 37 H 1.08999 * 109.47310 * 270.27550 * 14 13 12 38 38 H 1.08994 * 109.47264 * 30.27434 * 14 13 12 39 39 H 1.09003 * 109.47180 * 150.27660 * 14 13 12 40 40 H 1.08989 * 109.47029 * 30.02064 * 16 15 13 41 41 H 1.09006 * 109.46491 * 150.01753 * 16 15 13 42 42 H 0.96999 * 120.00167 * 180.02562 * 20 19 17 43 43 H 1.08999 * 115.55229 * 34.41257 * 26 3 2 44 44 H 1.09004 * 117.50164 * 0.02562 * 27 26 3 45 45 H 1.09005 * 117.50063 * 145.01790 * 27 26 3 46 46 H 1.08998 * 117.49830 * 214.97533 * 28 26 3 47 47 H 1.08999 * 117.49605 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 0.4351 2.6645 -1.3668 7 8 -0.3401 2.6320 -0.4337 8 6 0.0401 3.3327 -2.6428 9 8 0.8156 3.3656 -3.5760 10 7 -1.1774 3.8991 -2.7580 11 6 -1.5476 4.5248 -3.9537 12 6 -0.7519 4.6403 -5.1053 13 6 -1.4679 5.3065 -6.0392 14 6 -1.0056 5.6528 -7.4310 15 7 -2.6682 5.6108 -5.5017 16 6 -3.7509 6.3372 -6.1698 17 6 -3.5949 7.8147 -5.9178 18 1 -2.7713 8.1766 -5.3201 19 6 -4.5034 8.7046 -6.4503 20 7 -5.5060 8.2640 -7.1785 21 14 -4.3096 10.5362 -6.1384 22 1 -3.0026 10.9940 -6.6744 23 1 -5.4072 11.2724 -6.8156 24 1 -4.3648 10.7981 -4.6777 25 7 -2.6973 5.1114 -4.1933 26 6 3.5648 1.4444 0.1256 27 6 4.1655 1.9736 1.4294 28 6 4.2703 2.8019 0.1464 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2718 2.1233 -1.9978 35 1 -1.7969 3.8732 -2.0121 36 1 0.2526 4.2619 -5.2248 37 1 -0.5131 6.6251 -7.4190 38 1 -0.3046 4.8948 -7.7802 39 1 -1.8649 5.6890 -8.1008 40 1 -3.7098 6.1451 -7.2419 41 1 -4.7105 6.0009 -5.7770 42 1 -6.1450 8.8901 -7.5535 43 1 4.0780 0.6179 -0.3658 44 1 3.4744 2.3201 2.1979 45 1 5.0742 1.4956 1.7955 46 1 5.2478 2.8683 -0.3312 47 1 3.6481 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595173337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:59 Heat of formation + Delta-G solvation = 9.286874 kcal Electronic energy + Delta-G solvation = -28275.006043 eV Core-core repulsion = 24266.673680 eV Total energy + Delta-G solvation = -4008.332363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.54023 -41.71792 -40.08992 -38.64166 -36.67594 -35.69439 -35.25559 -33.36976 -33.08601 -32.67347 -29.00205 -28.29540 -27.92487 -26.26251 -24.68669 -23.32802 -22.75401 -22.22782 -21.60762 -21.40559 -20.81326 -19.15938 -18.78601 -18.22322 -17.59301 -17.41939 -16.98749 -16.90785 -16.36649 -16.03831 -15.99626 -15.47456 -15.40403 -15.15633 -14.78367 -14.34913 -14.16559 -13.84248 -13.80421 -13.73806 -13.57332 -13.22620 -13.15624 -13.00871 -12.74087 -12.66691 -12.46674 -12.36487 -12.24924 -12.18005 -12.07306 -11.76918 -11.58840 -11.45227 -11.33599 -11.14170 -10.74814 -10.69967 -10.22577 -9.67259 -9.24406 -8.33906 -6.51112 0.05710 0.84409 1.07456 1.38145 1.39795 1.48520 1.71701 1.80011 2.24516 2.32927 2.51248 2.95630 2.96564 3.29890 3.48454 3.80186 3.88844 4.07867 4.10351 4.14750 4.23065 4.38422 4.39684 4.45570 4.64972 4.71302 4.72538 4.83103 4.84643 4.91156 4.91494 4.94230 4.99999 5.05280 5.07214 5.11585 5.18659 5.26324 5.28535 5.33662 5.45237 5.52412 5.78484 5.79948 5.84935 6.19274 6.21801 6.57201 6.60288 6.82299 6.93289 7.19658 8.72349 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002174 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.153929 B =12877.732598 C =13021.655953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.172 3.828 4 H 0.080 0.920 5 N -0.675 5.675 6 C 0.524 3.476 7 O -0.527 6.527 8 C 0.514 3.486 9 O -0.507 6.507 10 N -0.601 5.601 11 C 0.266 3.734 12 C -0.292 4.292 13 C 0.090 3.910 14 C -0.082 4.082 15 N -0.338 5.338 16 C 0.274 3.726 17 C -0.554 4.554 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.277 1.277 25 N -0.354 5.354 26 C -0.166 4.166 27 C -0.161 4.161 28 C -0.181 4.181 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.420 0.580 35 H 0.428 0.572 36 H 0.176 0.824 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.274 0.726 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.768 -15.901 12.316 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.069 3.931 4 H 0.099 0.901 5 N -0.328 5.328 6 C 0.303 3.697 7 O -0.404 6.404 8 C 0.295 3.705 9 O -0.380 6.380 10 N -0.250 5.250 11 C 0.012 3.988 12 C -0.323 4.323 13 C -0.040 4.040 14 C -0.140 4.140 15 N -0.121 5.121 16 C 0.155 3.845 17 C -0.592 4.592 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.203 1.203 25 N -0.185 5.185 26 C -0.185 4.185 27 C -0.198 4.198 28 C -0.218 4.218 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.258 0.742 35 H 0.266 0.734 36 H 0.193 0.807 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.148 0.852 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.127 0.873 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.394 -15.524 12.655 27.880 hybrid contribution -0.064 0.926 -0.170 0.943 sum 19.330 -14.598 12.485 27.251 Atomic orbital electron populations 1.21821 0.96379 1.01083 1.01382 1.21928 0.95421 0.94952 1.04078 1.20871 0.93262 0.93766 0.85155 0.90146 1.45794 1.14432 1.54243 1.18284 1.19348 0.83854 0.79960 0.86501 1.90804 1.51415 1.58551 1.39645 1.20515 0.81180 0.79444 0.89371 1.90685 1.50596 1.56815 1.39939 1.42134 1.16901 1.52770 1.13220 1.19204 0.93453 0.97680 0.88428 1.21459 1.03843 1.14945 0.92048 1.21816 0.86104 0.97338 0.98766 1.20498 1.02219 1.03668 0.87634 1.48864 1.13735 1.41617 1.07863 1.19296 0.83043 0.90238 0.91912 1.21392 1.12498 0.91225 1.34088 0.93183 1.25723 0.94025 1.04054 0.93998 1.69990 1.14528 1.37219 1.33781 0.85422 0.78510 0.78299 0.78359 1.18854 1.19756 1.20252 1.77250 1.20833 1.21604 0.98765 1.22528 0.92277 0.99429 1.04235 1.23086 1.03284 1.02879 0.90573 1.22988 1.02486 0.94033 1.02336 0.93165 0.94764 0.92314 0.90506 0.88665 0.74193 0.73397 0.80708 0.89654 0.87167 0.91255 0.92614 0.95782 0.91708 0.85182 0.88802 0.86740 0.87316 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.51 71.98 0.61 -2.00 16 2 C -0.13 -1.51 5.59 30.60 0.17 -1.34 16 3 C 0.17 2.29 2.45 44.99 0.11 2.40 16 4 H 0.08 1.33 7.34 -2.38 -0.02 1.32 16 5 N -0.67 -11.28 4.90 -443.97 -2.18 -13.45 16 6 C 0.52 12.28 6.45 87.24 0.56 12.85 16 7 O -0.53 -14.13 13.61 -3.26 -0.04 -14.17 16 8 C 0.51 14.71 7.85 87.24 0.69 15.40 16 9 O -0.51 -15.50 13.60 -3.36 -0.05 -15.55 16 10 N -0.60 -19.80 5.43 -308.89 -1.68 -21.48 16 11 C 0.27 10.89 8.10 133.40 1.08 11.97 16 12 C -0.29 -11.46 9.51 22.11 0.21 -11.25 16 13 C 0.09 3.69 6.92 41.37 0.29 3.98 16 14 C -0.08 -2.61 10.11 71.23 0.72 -1.89 16 15 N -0.34 -16.29 3.59 -338.44 -1.22 -17.50 16 16 C 0.27 14.43 5.99 85.63 0.51 14.94 16 17 C -0.55 -30.97 9.39 25.60 0.24 -30.73 16 18 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 19 C 0.02 1.27 5.46 84.65 0.46 1.73 16 20 N -0.92 -51.72 13.29 21.45 0.28 -51.43 16 21 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 N -0.35 -16.87 12.60 -54.53 -0.69 -17.56 16 26 C -0.17 -1.47 5.22 -10.79 -0.06 -1.53 16 27 C -0.16 -1.32 10.18 30.62 0.31 -1.01 16 28 C -0.18 -1.84 10.13 30.62 0.31 -1.53 16 29 H 0.05 0.99 7.85 -2.39 -0.02 0.97 16 30 H 0.03 0.74 5.64 -2.38 -0.01 0.73 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.42 6.09 8.07 -92.71 -0.75 5.34 16 35 H 0.43 13.02 8.29 -92.71 -0.77 12.25 16 36 H 0.18 6.26 5.91 -2.91 -0.02 6.24 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.07 2.27 7.07 -2.39 -0.02 2.25 16 40 H 0.06 2.88 7.04 -2.39 -0.02 2.86 16 41 H 0.02 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.13 0.77 8.11 -2.39 -0.02 0.75 16 44 H 0.09 0.86 8.05 -2.38 -0.02 0.84 16 45 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.57 392.53 2.18 -65.39 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.50 Total: 28.72 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.22 Total: 11.98 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -5.47 Total: -121.43 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.09 Total: -29.72 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.57 2.18 -65.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595173337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.675 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds