Wall clock time and date at job start Tue Mar 31 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.53002 * 109.47217 * 119.99511 * 2 1 3 5 5 C 1.53009 * 109.46789 * 65.38478 * 4 2 1 6 6 N 1.46494 * 115.54935 * 55.75869 * 5 4 2 7 7 C 1.34777 * 120.00030 * 60.71105 * 6 5 4 8 8 O 1.21366 * 119.99740 * 355.12258 * 7 6 5 9 9 C 1.49342 * 120.00454 * 175.12464 * 7 6 5 10 10 O 1.21379 * 119.99610 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00039 * 179.97438 * 9 7 6 12 12 C 1.39930 * 119.99624 * 179.97438 * 11 9 7 13 13 C 1.40458 * 125.98338 * 0.02562 * 12 11 9 14 14 C 1.35210 * 107.86834 * 179.97438 * 13 12 11 15 15 N 1.34994 * 107.87660 * 0.22095 * 14 13 12 16 16 C 1.46500 * 125.97038 * 179.73735 * 15 14 13 17 17 C 1.50695 * 109.46958 * 125.00648 * 16 15 14 18 18 H 1.08002 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00077 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99791 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00244 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47034 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47301 * 119.99979 * 21 19 17 24 24 H 1.48504 * 109.47541 * 239.99720 * 21 19 17 25 25 N 1.31279 * 125.97778 * 179.97438 * 12 11 9 26 26 C 1.52996 * 117.49765 * 201.43503 * 5 4 2 27 27 C 1.52999 * 117.49573 * 270.09408 * 5 4 2 28 28 H 1.09001 * 109.46660 * 63.21741 * 1 2 3 29 29 H 1.08996 * 109.47054 * 183.21275 * 1 2 3 30 30 H 1.08994 * 109.47120 * 303.22114 * 1 2 3 31 31 H 1.09005 * 109.47529 * 240.00015 * 2 1 3 32 32 H 1.09001 * 109.47672 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47014 * 299.99546 * 3 2 1 34 34 H 1.08998 * 109.47409 * 59.99473 * 3 2 1 35 35 H 1.09001 * 109.47109 * 305.38787 * 4 2 1 36 36 H 1.08994 * 109.47402 * 185.38466 * 4 2 1 37 37 H 0.96996 * 120.00252 * 240.70414 * 6 5 4 38 38 H 0.96999 * 120.00190 * 0.02562 * 11 9 7 39 39 H 1.08002 * 126.06478 * 359.95468 * 13 12 11 40 40 H 1.08003 * 126.06458 * 179.97438 * 14 13 12 41 41 H 1.09005 * 109.46808 * 245.00341 * 16 15 14 42 42 H 1.09000 * 109.47338 * 4.99986 * 16 15 14 43 43 H 0.97008 * 120.00353 * 180.02562 * 20 19 17 44 44 H 1.09000 * 117.49789 * 214.99923 * 26 5 4 45 45 H 1.08997 * 117.50076 * 0.02562 * 26 5 4 46 46 H 1.08997 * 117.50208 * 359.97387 * 27 5 4 47 47 H 1.09004 * 117.49898 * 144.97250 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6435 -2.1975 1.1835 6 7 2.0852 -2.9176 -0.0133 7 6 3.4003 -3.0259 -0.2877 8 8 4.2142 -2.4528 0.4067 9 6 3.8561 -3.8509 -1.4461 10 8 3.0421 -4.4243 -2.1403 11 7 5.1712 -3.9587 -1.7207 12 6 5.5982 -4.7322 -2.8058 13 6 4.7696 -5.4457 -3.6874 14 6 5.5613 -6.0604 -4.5949 15 7 6.8430 -5.7554 -4.3007 16 6 8.0267 -6.2181 -5.0294 17 6 8.8481 -5.0301 -5.4593 18 1 8.5210 -4.0304 -5.2146 19 6 10.0168 -5.2194 -6.1660 20 7 10.4149 -6.4368 -6.4644 21 14 11.0347 -3.7468 -6.6995 22 1 10.3743 -2.4973 -6.2436 23 1 12.3900 -3.8383 -6.0994 24 1 11.1489 -3.7341 -8.1801 25 7 6.8433 -4.9173 -3.1785 26 6 1.5977 -2.9760 2.4998 27 6 0.2962 -2.5947 1.7900 28 1 -0.3633 0.4631 -0.9174 29 1 -0.3633 -1.0260 0.0576 30 1 -0.3633 0.5630 0.8597 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6000 -0.2660 2.1366 36 1 3.1257 -0.6384 1.2989 37 1 1.4312 -3.3166 -0.6083 38 1 5.8217 -3.5007 -1.1657 39 1 3.6915 -5.4948 -3.6474 40 1 5.2277 -6.6878 -5.4083 41 1 8.6252 -6.8583 -4.3812 42 1 7.7148 -6.7816 -5.9088 43 1 11.2374 -6.5701 -6.9613 44 1 1.8963 -4.0240 2.4753 45 1 1.8496 -2.4364 3.4127 46 1 -0.3075 -1.8045 2.2362 47 1 -0.2617 -3.3917 1.2983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595200052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:13 Heat of formation + Delta-G solvation = 30.344187 kcal Electronic energy + Delta-G solvation = -28237.810416 eV Core-core repulsion = 24230.391167 eV Total energy + Delta-G solvation = -4007.419249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18465 -40.42521 -39.17441 -37.83841 -35.50389 -35.04356 -33.43336 -33.03113 -31.05108 -29.42942 -27.94429 -27.44889 -27.04354 -25.44155 -23.09371 -22.86770 -21.79290 -20.89091 -20.50168 -19.76063 -19.67546 -18.34476 -16.90390 -16.62459 -16.43771 -16.25148 -16.08576 -15.45721 -15.22624 -14.95649 -14.45526 -14.37391 -14.16872 -14.07606 -13.74701 -13.63639 -12.96670 -12.61269 -12.54970 -12.42447 -12.31482 -12.14760 -11.98756 -11.92412 -11.86824 -11.54821 -11.39669 -11.08256 -10.93439 -10.87419 -10.79863 -10.55556 -10.40098 -10.28819 -10.01249 -9.54775 -9.52123 -9.35997 -8.66125 -8.24454 -7.59598 -6.26906 -4.31975 1.18644 1.98226 2.64648 3.00343 3.12441 3.21699 3.28679 3.29457 3.36517 3.65118 3.80906 4.12905 4.29001 4.35979 4.39711 4.44857 4.68419 4.81151 4.85885 5.08578 5.18726 5.23817 5.33637 5.36073 5.41264 5.43144 5.49444 5.56642 5.64361 5.68087 5.69916 5.76741 5.94777 5.99471 6.06734 6.08791 6.14961 6.31118 6.39956 6.78047 6.90133 7.01033 7.22835 7.35494 7.62794 7.68670 7.83840 7.93886 7.96388 8.52768 8.76993 9.34033 10.81955 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.002224 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.111490 B =12585.174802 C =13389.264084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.087 4.087 5 C 0.105 3.895 6 N -0.670 5.670 7 C 0.520 3.480 8 O -0.506 6.506 9 C 0.512 3.488 10 O -0.500 6.500 11 N -0.598 5.598 12 C 0.250 3.750 13 C -0.286 4.286 14 C 0.053 3.947 15 N -0.314 5.314 16 C 0.257 3.743 17 C -0.529 4.529 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.294 5.294 26 C -0.175 4.175 27 C -0.168 4.168 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.267 0.733 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.015 8.906 15.417 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.125 4.125 5 C 0.018 3.982 6 N -0.323 5.323 7 C 0.301 3.699 8 O -0.380 6.380 9 C 0.292 3.708 10 O -0.373 6.373 11 N -0.246 5.246 12 C -0.003 4.003 13 C -0.317 4.317 14 C -0.097 4.097 15 N -0.096 5.096 16 C 0.139 3.861 17 C -0.567 4.567 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.125 5.125 26 C -0.213 4.213 27 C -0.205 4.205 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.252 0.748 38 H 0.260 0.740 39 H 0.178 0.822 40 H 0.188 0.812 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.526 9.024 15.511 27.265 hybrid contribution -0.106 0.408 -0.620 0.750 sum -20.632 9.432 14.891 27.137 Atomic orbital electron populations 1.21916 0.95228 1.01933 1.01485 1.21045 0.95831 0.96099 0.98292 1.21830 1.01281 0.95765 1.01603 1.21453 1.02993 0.89788 0.98277 1.20711 1.00262 0.92392 0.84863 1.44998 1.06554 1.55062 1.25722 1.19879 0.83400 0.81689 0.84975 1.90771 1.52926 1.44621 1.49633 1.19937 0.82645 0.82673 0.85568 1.90707 1.52805 1.44910 1.48921 1.41991 1.07397 1.47074 1.28138 1.19015 0.92586 0.97505 0.91163 1.21508 1.01163 1.09023 0.99979 1.22583 0.84842 1.01563 1.00686 1.49175 1.07022 1.33379 1.20066 1.19807 0.79476 0.96212 0.90566 1.21287 1.06891 0.92941 1.35625 0.91194 1.24947 0.97142 0.96568 0.95423 1.69926 1.23595 1.20334 1.39446 0.86268 0.79798 0.82247 0.78182 1.19517 1.20650 1.20751 1.77412 1.16232 1.14792 1.04086 1.23447 1.00342 1.01541 0.95990 1.23419 0.90425 1.03760 1.02931 0.92948 0.92229 0.92884 0.91278 0.92526 0.92694 0.92777 0.90747 0.89496 0.74809 0.73952 0.82180 0.81229 0.93537 0.92366 0.92340 0.88289 0.87799 0.87402 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.86 37.16 0.33 -0.60 16 2 C -0.09 -0.73 2.85 -90.62 -0.26 -0.99 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C -0.09 -0.69 4.38 -26.73 -0.12 -0.81 16 5 C 0.10 0.81 1.37 -131.82 -0.18 0.63 16 6 N -0.67 -6.17 4.83 -48.07 -0.23 -6.40 16 7 C 0.52 6.35 7.76 -11.64 -0.09 6.26 16 8 O -0.51 -7.03 14.94 5.48 0.08 -6.95 16 9 C 0.51 7.41 7.85 -11.64 -0.09 7.32 16 10 O -0.50 -7.79 13.61 5.47 0.07 -7.72 16 11 N -0.60 -9.74 5.43 -11.58 -0.06 -9.80 16 12 C 0.25 4.98 8.10 -154.55 -1.25 3.73 16 13 C -0.29 -5.42 9.60 -39.82 -0.38 -5.80 16 14 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 15 N -0.31 -7.18 3.67 -62.56 -0.23 -7.41 16 16 C 0.26 6.43 6.26 -5.20 -0.03 6.40 16 17 C -0.53 -14.62 9.23 -34.44 -0.32 -14.94 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 21 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 N -0.29 -6.74 12.42 31.41 0.39 -6.35 16 26 C -0.17 -1.22 10.18 -26.70 -0.27 -1.49 16 27 C -0.17 -0.90 8.35 -26.69 -0.22 -1.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 5.99 -51.93 -0.31 0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.09 0.89 6.73 -51.93 -0.35 0.54 16 37 H 0.41 3.34 8.31 -40.82 -0.34 3.00 16 38 H 0.42 6.34 8.29 -40.82 -0.34 6.00 16 39 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 40 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.11 0.45 8.12 -51.93 -0.42 0.02 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -31.36 394.55 -8.24 -39.60 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.08 Total: 6.94 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.84 Total: 0.25 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.60 Total: -54.39 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.16 Total: -14.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.36 -8.24 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595200052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.943 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds