Wall clock time and date at job start Tue Mar 31 2020 18:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35817 * 126.05154 * 2 1 4 4 C 1.35754 * 107.56285 * 180.15631 * 3 2 1 5 5 N 1.40767 * 126.08055 * 179.83627 * 4 3 2 6 6 C 1.46757 * 124.34793 * 179.71584 * 5 4 3 7 7 C 1.54482 * 105.47340 * 162.96274 * 6 5 4 8 8 H 1.09000 * 110.97387 * 267.26474 * 7 6 5 9 9 C 1.50699 * 110.96925 * 143.53368 * 7 6 5 10 10 O 1.21281 * 120.00209 * 359.72616 * 9 7 6 11 11 N 1.34775 * 119.99748 * 180.02562 * 9 7 6 12 12 C 1.46508 * 120.00048 * 179.72493 * 11 9 7 13 13 C 1.52991 * 109.47321 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47146 * 300.00069 * 13 12 11 15 15 C 1.53001 * 109.47337 * 59.99877 * 13 12 11 16 16 C 1.50697 * 109.47233 * 179.97438 * 13 12 11 17 17 H 1.07998 * 119.99715 * 357.01038 * 16 13 12 18 18 C 1.37885 * 120.00185 * 177.00381 * 16 13 12 19 19 N 1.31512 * 119.99721 * 5.54375 * 18 16 13 20 20 Si 1.86793 * 119.99957 * 185.54382 * 18 16 13 21 21 H 1.48500 * 109.47261 * 85.00152 * 20 18 16 22 22 H 1.48498 * 109.47188 * 205.00217 * 20 18 16 23 23 H 1.48497 * 109.47272 * 325.00352 * 20 18 16 24 24 C 1.54634 * 101.76348 * 25.41749 * 7 6 5 25 25 C 1.34416 * 124.34921 * 359.69342 * 5 4 3 26 26 O 1.21304 * 124.94115 * 0.43169 * 25 5 4 27 27 C 1.40252 * 107.83844 * 359.57943 * 4 3 2 28 28 N 1.30834 * 108.33650 * 0.26032 * 27 4 3 29 29 H 1.09000 * 109.47125 * 270.28597 * 1 2 3 30 30 H 1.09001 * 109.47355 * 30.29050 * 1 2 3 31 31 H 1.09003 * 109.46838 * 150.29070 * 1 2 3 32 32 H 1.07998 * 126.22050 * 359.97438 * 3 2 1 33 33 H 1.09003 * 110.24826 * 43.96544 * 6 5 4 34 34 H 1.08996 * 110.24980 * 281.96575 * 6 5 4 35 35 H 0.97000 * 120.00381 * 359.72691 * 11 9 7 36 36 H 1.09002 * 109.46611 * 300.00484 * 12 11 9 37 37 H 1.08997 * 109.46624 * 59.99738 * 12 11 9 38 38 H 1.08996 * 109.47260 * 53.93534 * 14 13 12 39 39 H 1.09001 * 109.47670 * 173.93075 * 14 13 12 40 40 H 1.09000 * 109.47098 * 293.93372 * 14 13 12 41 41 H 1.08999 * 109.46945 * 60.00298 * 15 13 12 42 42 H 1.08997 * 109.47364 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47299 * 299.99864 * 15 13 12 44 44 H 0.96996 * 119.99830 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.48522 * 93.87406 * 24 7 6 46 46 H 1.08999 * 110.48726 * 216.52149 * 24 7 6 47 47 H 1.07998 * 125.83191 * 180.29921 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0981 0.0000 4 6 3.5517 0.6676 -0.0035 5 7 4.6987 1.4836 -0.0080 6 6 6.0758 0.9764 -0.0057 7 6 6.9545 2.1674 -0.4483 8 1 7.1129 2.1559 -1.5267 9 6 8.2698 2.1699 0.2872 10 8 8.5087 1.3072 1.1055 11 7 9.1782 3.1343 0.0401 12 6 10.4545 3.1402 0.7595 13 6 11.2957 4.3311 0.2960 14 6 11.5580 4.2161 -1.2070 15 6 10.5419 5.6310 0.5841 16 6 12.6082 4.3375 1.0364 17 1 12.8015 3.5977 1.7991 18 6 13.5623 5.2878 0.7401 19 7 13.2870 6.2535 -0.1091 20 14 15.2459 5.2036 1.5449 21 1 16.1207 4.2889 0.7681 22 1 15.8494 6.5601 1.5735 23 1 15.1061 4.6947 2.9329 24 6 6.0837 3.3745 -0.0289 25 6 4.6733 2.8275 -0.0153 26 8 3.6660 3.5034 -0.0115 27 6 3.5358 -0.7348 0.0041 28 7 2.2894 -1.1323 0.0062 29 1 -0.3633 0.0051 1.0276 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9354 2.1268 -0.0004 33 1 6.1753 0.1516 -0.7115 34 1 6.3568 0.6522 0.9963 35 1 8.9871 3.8245 -0.6141 36 1 10.2676 3.2226 1.8302 37 1 10.9913 2.2140 0.5545 38 1 10.6104 4.1034 -1.7336 39 1 12.0636 5.1158 -1.5576 40 1 12.1869 3.3471 -1.4006 41 1 10.3551 5.7130 1.6548 42 1 11.1410 6.4794 0.2534 43 1 9.5924 5.6267 0.0488 44 1 13.9580 6.9222 -0.3173 45 1 6.3674 3.7228 0.9643 46 1 6.1733 4.1807 -0.7570 47 1 4.4042 -1.3769 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600002320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:30 Heat of formation + Delta-G solvation = 11.827715 kcal Electronic energy + Delta-G solvation = -28561.160660 eV Core-core repulsion = 24552.938476 eV Total energy + Delta-G solvation = -4008.222184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76841 -40.58424 -39.13439 -36.78345 -36.19775 -33.94570 -33.38737 -32.53586 -30.89525 -29.41727 -28.05934 -26.82195 -25.82922 -25.78545 -25.14172 -23.19563 -22.29013 -21.00780 -19.90855 -19.60484 -18.84767 -17.96270 -17.54375 -16.51116 -16.05669 -15.80941 -15.48928 -15.26099 -15.16764 -14.90997 -14.67308 -14.52358 -13.93575 -13.80073 -13.61956 -13.32328 -13.21373 -12.96928 -12.91403 -12.73908 -12.64029 -12.24287 -11.77222 -11.59747 -11.45421 -11.23156 -11.18571 -10.90304 -10.73626 -10.45378 -10.44053 -10.27812 -10.17633 -9.71980 -9.69041 -9.66551 -9.33159 -8.84898 -8.56005 -8.38376 -7.88804 -6.06860 -4.15779 1.50396 2.01991 2.03611 2.72539 2.80162 2.86250 3.26312 3.33204 3.35514 3.46834 4.00077 4.09075 4.31747 4.37046 4.60819 4.66660 4.72060 4.78844 4.83449 5.03936 5.12235 5.18442 5.20546 5.29027 5.35937 5.40051 5.53529 5.70475 5.87177 6.13990 6.24723 6.44130 6.47646 6.67702 6.68600 6.75241 6.82082 6.84747 6.91207 6.95360 7.29005 7.34624 7.50260 7.65619 7.87749 7.90197 7.94328 8.08128 8.32253 8.50468 8.84391 9.49961 10.95123 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002064 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.377747 B =13565.402023 C =14012.736821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.376 5.376 3 C 0.038 3.962 4 C 0.010 3.990 5 N -0.534 5.534 6 C 0.117 3.883 7 C -0.125 4.125 8 H 0.119 0.881 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.710 5.710 12 C 0.131 3.869 13 C 0.055 3.945 14 C -0.129 4.129 15 C -0.131 4.131 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.140 4.140 25 C 0.519 3.481 26 O -0.526 6.526 27 C 0.040 3.960 28 N -0.281 5.281 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.189 0.811 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.007 0.993 39 H 0.081 0.919 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.006 0.994 44 H 0.260 0.740 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.806 -8.522 -3.718 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.109 4.109 4 C -0.092 4.092 5 N -0.260 5.260 6 C -0.005 4.005 7 C -0.147 4.147 8 H 0.137 0.863 9 C 0.300 3.700 10 O -0.423 6.423 11 N -0.360 5.360 12 C 0.009 3.991 13 C 0.055 3.945 14 C -0.187 4.187 15 C -0.189 4.189 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.180 4.180 25 C 0.308 3.692 26 O -0.402 6.402 27 C -0.148 4.148 28 N -0.103 5.103 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.206 0.794 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.009 -9.609 -3.200 24.227 hybrid contribution 1.534 1.023 0.065 1.845 sum -20.475 -8.585 -3.135 22.422 Atomic orbital electron populations 1.21852 0.73497 1.04575 1.03486 1.48336 1.06592 1.03259 1.57936 1.22464 0.89521 0.93946 1.04968 1.17543 0.85972 0.90218 1.15504 1.45221 1.04935 1.05771 1.70095 1.22095 0.77615 0.96069 1.04709 1.22269 0.93828 0.95848 1.02717 0.86343 1.19888 0.84794 0.82263 0.83030 1.90697 1.78844 1.37746 1.35053 1.46305 1.18224 1.28427 1.43017 1.21768 0.81373 1.00780 0.95217 1.18367 0.93310 0.89415 0.93455 1.21812 0.97298 1.02474 0.97124 1.21856 0.96536 1.02193 0.98267 1.20945 0.98900 1.14280 1.20540 0.92429 1.24877 0.98509 0.94944 0.95120 1.69816 1.33945 1.13771 1.34722 0.86597 0.84288 0.77173 0.79871 1.20631 1.21339 1.19976 1.22302 0.91292 0.98292 1.06134 1.20875 0.91542 0.81405 0.75390 1.90663 1.37094 1.62215 1.50229 1.23694 0.95826 0.92633 1.02607 1.77293 1.00822 1.08718 1.23485 0.90674 0.89305 0.89181 0.79394 0.89205 0.88099 0.76465 0.92511 0.92448 0.97444 0.89988 0.95145 0.95409 0.89569 0.97526 0.92968 0.86702 0.86584 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.58 11.48 59.85 0.69 1.26 16 2 N -0.38 -3.75 4.04 -67.82 -0.27 -4.03 16 3 C 0.04 0.42 10.69 -16.68 -0.18 0.24 16 4 C 0.01 0.12 6.80 -83.88 -0.57 -0.45 16 5 N -0.53 -6.01 3.16 -112.49 -0.36 -6.36 16 6 C 0.12 1.17 6.29 -3.12 -0.02 1.15 16 7 C -0.12 -1.24 3.54 -90.14 -0.32 -1.56 16 8 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 9 C 0.52 7.29 7.06 -10.99 -0.08 7.21 16 10 O -0.54 -9.63 15.50 5.56 0.09 -9.54 16 11 N -0.71 -10.76 4.90 -60.29 -0.30 -11.06 16 12 C 0.13 2.53 4.50 -4.04 -0.02 2.51 16 13 C 0.06 1.20 0.50 -155.67 -0.08 1.12 16 14 C -0.13 -2.72 8.03 37.16 0.30 -2.42 16 15 C -0.13 -2.76 8.10 37.16 0.30 -2.46 16 16 C -0.51 -12.75 8.01 -34.44 -0.28 -13.03 16 17 H 0.06 1.46 7.75 -52.49 -0.41 1.06 16 18 C 0.07 1.71 5.13 -17.82 -0.09 1.62 16 19 N -0.88 -22.85 9.45 55.43 0.52 -22.33 16 20 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.14 -1.39 6.41 -26.74 -0.17 -1.56 16 25 C 0.52 6.33 7.98 -10.86 -0.09 6.25 16 26 O -0.53 -7.73 15.64 5.54 0.09 -7.64 16 27 C 0.04 0.43 11.53 -17.22 -0.20 0.23 16 28 N -0.28 -3.24 12.56 30.70 0.39 -2.85 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.19 2.05 6.51 -52.49 -0.34 1.71 16 33 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.10 1.15 6.96 -51.93 -0.36 0.79 16 35 H 0.40 5.39 6.16 -40.82 -0.25 5.13 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 39 H 0.08 1.93 6.25 -51.93 -0.32 1.60 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 2.05 6.10 -51.93 -0.32 1.74 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.53 8.31 -40.82 -0.34 6.20 16 45 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 46 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -31.33 381.14 -6.82 -38.15 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.90 Total: 4.61 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.80 Total: 0.10 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.02 Total: -46.63 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.18 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.33 -6.82 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds