Wall clock time and date at job start Tue Mar 31 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35817 * 126.05154 * 2 1 4 4 C 1.35754 * 107.56285 * 180.15631 * 3 2 1 5 5 N 1.40767 * 126.08055 * 179.83627 * 4 3 2 6 6 C 1.46757 * 124.34793 * 179.71584 * 5 4 3 7 7 C 1.54482 * 105.47340 * 162.96274 * 6 5 4 8 8 H 1.09000 * 110.97387 * 267.26474 * 7 6 5 9 9 C 1.50699 * 110.96925 * 143.53368 * 7 6 5 10 10 O 1.21281 * 120.00209 * 359.72616 * 9 7 6 11 11 N 1.34775 * 119.99748 * 180.02562 * 9 7 6 12 12 C 1.46508 * 120.00048 * 179.72493 * 11 9 7 13 13 C 1.52991 * 109.47321 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47146 * 300.00069 * 13 12 11 15 15 C 1.53001 * 109.47337 * 59.99877 * 13 12 11 16 16 C 1.50697 * 109.47233 * 179.97438 * 13 12 11 17 17 H 1.07998 * 119.99715 * 357.01038 * 16 13 12 18 18 C 1.37885 * 120.00185 * 177.00381 * 16 13 12 19 19 N 1.31512 * 119.99721 * 5.54375 * 18 16 13 20 20 Si 1.86793 * 119.99957 * 185.54382 * 18 16 13 21 21 H 1.48500 * 109.47261 * 85.00152 * 20 18 16 22 22 H 1.48498 * 109.47188 * 205.00217 * 20 18 16 23 23 H 1.48497 * 109.47272 * 325.00352 * 20 18 16 24 24 C 1.54634 * 101.76348 * 25.41749 * 7 6 5 25 25 C 1.34416 * 124.34921 * 359.69342 * 5 4 3 26 26 O 1.21304 * 124.94115 * 0.43169 * 25 5 4 27 27 C 1.40252 * 107.83844 * 359.57943 * 4 3 2 28 28 N 1.30834 * 108.33650 * 0.26032 * 27 4 3 29 29 H 1.09000 * 109.47125 * 270.28597 * 1 2 3 30 30 H 1.09001 * 109.47355 * 30.29050 * 1 2 3 31 31 H 1.09003 * 109.46838 * 150.29070 * 1 2 3 32 32 H 1.07998 * 126.22050 * 359.97438 * 3 2 1 33 33 H 1.09003 * 110.24826 * 43.96544 * 6 5 4 34 34 H 1.08996 * 110.24980 * 281.96575 * 6 5 4 35 35 H 0.97000 * 120.00381 * 359.72691 * 11 9 7 36 36 H 1.09002 * 109.46611 * 300.00484 * 12 11 9 37 37 H 1.08997 * 109.46624 * 59.99738 * 12 11 9 38 38 H 1.08996 * 109.47260 * 53.93534 * 14 13 12 39 39 H 1.09001 * 109.47670 * 173.93075 * 14 13 12 40 40 H 1.09000 * 109.47098 * 293.93372 * 14 13 12 41 41 H 1.08999 * 109.46945 * 60.00298 * 15 13 12 42 42 H 1.08997 * 109.47364 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47299 * 299.99864 * 15 13 12 44 44 H 0.96996 * 119.99830 * 179.97438 * 19 18 16 45 45 H 1.09002 * 110.48522 * 93.87406 * 24 7 6 46 46 H 1.08999 * 110.48726 * 216.52149 * 24 7 6 47 47 H 1.07998 * 125.83191 * 180.29921 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0981 0.0000 4 6 3.5517 0.6676 -0.0035 5 7 4.6987 1.4836 -0.0080 6 6 6.0758 0.9764 -0.0057 7 6 6.9545 2.1674 -0.4483 8 1 7.1129 2.1559 -1.5267 9 6 8.2698 2.1699 0.2872 10 8 8.5087 1.3072 1.1055 11 7 9.1782 3.1343 0.0401 12 6 10.4545 3.1402 0.7595 13 6 11.2957 4.3311 0.2960 14 6 11.5580 4.2161 -1.2070 15 6 10.5419 5.6310 0.5841 16 6 12.6082 4.3375 1.0364 17 1 12.8015 3.5977 1.7991 18 6 13.5623 5.2878 0.7401 19 7 13.2870 6.2535 -0.1091 20 14 15.2459 5.2036 1.5449 21 1 16.1207 4.2889 0.7681 22 1 15.8494 6.5601 1.5735 23 1 15.1061 4.6947 2.9329 24 6 6.0837 3.3745 -0.0289 25 6 4.6733 2.8275 -0.0153 26 8 3.6660 3.5034 -0.0115 27 6 3.5358 -0.7348 0.0041 28 7 2.2894 -1.1323 0.0062 29 1 -0.3633 0.0051 1.0276 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9354 2.1268 -0.0004 33 1 6.1753 0.1516 -0.7115 34 1 6.3568 0.6522 0.9963 35 1 8.9871 3.8245 -0.6141 36 1 10.2676 3.2226 1.8302 37 1 10.9913 2.2140 0.5545 38 1 10.6104 4.1034 -1.7336 39 1 12.0636 5.1158 -1.5576 40 1 12.1869 3.3471 -1.4006 41 1 10.3551 5.7130 1.6548 42 1 11.1410 6.4794 0.2534 43 1 9.5924 5.6267 0.0488 44 1 13.9580 6.9222 -0.3173 45 1 6.3674 3.7228 0.9643 46 1 6.1733 4.1807 -0.7570 47 1 4.4042 -1.3769 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600002320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:29 Heat of formation + Delta-G solvation = -8.087868 kcal Electronic energy + Delta-G solvation = -28562.024264 eV Core-core repulsion = 24552.938476 eV Total energy + Delta-G solvation = -4009.085788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58795 -41.50660 -40.29307 -38.19149 -37.35078 -35.02945 -34.59292 -33.40773 -32.54637 -30.23430 -28.92450 -27.57190 -27.49448 -27.33886 -26.79427 -24.27269 -23.08810 -21.87751 -20.98396 -20.56619 -20.41667 -18.90405 -18.49358 -17.76181 -17.33491 -16.85398 -16.62826 -16.50636 -16.20536 -16.01332 -15.96082 -15.42231 -14.97121 -14.86695 -14.65790 -14.55927 -14.36936 -14.03243 -13.91040 -13.81228 -13.54225 -13.35526 -13.17749 -13.02801 -12.67901 -12.58419 -12.52861 -12.41503 -12.17769 -12.11038 -11.97751 -11.41609 -11.28289 -11.26191 -11.11090 -10.73825 -10.61859 -10.46876 -10.34986 -9.87965 -8.71559 -7.99673 -6.13195 0.69736 1.16432 1.33979 1.44223 1.47723 1.54175 1.65260 1.95640 2.00669 2.32069 2.51243 3.14037 3.24657 3.27940 3.64887 3.79838 3.85703 3.92470 4.20730 4.22742 4.40883 4.43010 4.50278 4.54154 4.59400 4.63612 4.65955 4.68349 4.78670 4.79864 4.92752 5.08284 5.11197 5.12983 5.16721 5.26673 5.42823 5.65393 5.70254 5.72570 5.74442 5.89968 6.02159 6.21445 6.28028 6.47955 6.56515 6.70210 6.91638 6.99431 7.33839 7.53971 8.99287 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002064 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.377747 B =13565.402023 C =14012.736821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.375 5.375 3 C 0.033 3.967 4 C -0.012 4.012 5 N -0.530 5.530 6 C 0.118 3.882 7 C -0.108 4.108 8 H 0.154 0.846 9 C 0.521 3.479 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.148 3.852 13 C 0.049 3.951 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.527 4.527 17 H 0.044 0.956 18 C 0.028 3.972 19 N -0.897 5.897 20 Si 0.940 3.060 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.133 4.133 25 C 0.512 3.488 26 O -0.557 6.557 27 C 0.040 3.960 28 N -0.304 5.304 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.259 0.741 45 H 0.110 0.890 46 H 0.140 0.860 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.015 -8.949 -4.839 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.160 5.160 3 C -0.115 4.115 4 C -0.115 4.115 5 N -0.256 5.256 6 C -0.004 4.004 7 C -0.129 4.129 8 H 0.172 0.828 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.356 5.356 12 C 0.024 3.976 13 C 0.049 3.951 14 C -0.177 4.177 15 C -0.179 4.179 16 C -0.565 4.565 17 H 0.062 0.938 18 C -0.172 4.172 19 N -0.536 5.536 20 Si 0.767 3.233 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.174 4.174 25 C 0.302 3.698 26 O -0.436 6.436 27 C -0.147 4.147 28 N -0.127 5.127 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.205 0.795 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.249 0.751 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.128 0.872 46 H 0.158 0.842 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -23.242 -10.052 -4.335 25.691 hybrid contribution 1.828 1.111 0.459 2.188 sum -21.414 -8.941 -3.876 23.527 Atomic orbital electron populations 1.22223 0.71232 1.06127 1.04770 1.48722 1.07899 1.02500 1.56873 1.22556 0.89906 0.94240 1.04795 1.17807 0.86273 0.90807 1.16606 1.45274 1.05298 1.05593 1.69406 1.22143 0.76909 0.96755 1.04610 1.22200 0.90925 0.95877 1.03931 0.82817 1.20474 0.85576 0.80917 0.82306 1.90696 1.79742 1.39041 1.36634 1.46085 1.17067 1.29336 1.43064 1.21252 0.82839 0.98928 0.94582 1.18372 0.92484 0.90658 0.93635 1.21651 0.98686 1.00601 0.96775 1.21692 0.97656 1.00604 0.97953 1.21273 1.00823 1.13833 1.20608 0.93761 1.25420 1.00909 0.95000 0.95825 1.69923 1.34375 1.13955 1.35328 0.85856 0.81470 0.76986 0.78961 1.20521 1.21178 1.20208 1.22320 0.89605 0.98760 1.06668 1.21241 0.91983 0.81597 0.74969 1.90645 1.38209 1.62895 1.51820 1.24033 0.96290 0.92537 1.01876 1.77249 1.01462 1.09654 1.24307 0.89503 0.87262 0.88187 0.79529 0.86780 0.89677 0.75084 0.94238 0.93913 0.93759 0.92483 0.96306 0.96434 0.92249 0.93944 0.93175 0.87209 0.84154 0.77404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.48 127.77 1.47 2.35 16 2 N -0.37 -7.05 4.04 -368.48 -1.49 -8.53 16 3 C 0.03 0.70 10.69 83.50 0.89 1.59 16 4 C -0.01 -0.27 6.80 37.62 0.26 -0.02 16 5 N -0.53 -11.01 3.16 -628.38 -1.99 -13.00 16 6 C 0.12 2.07 6.29 86.83 0.55 2.61 16 7 C -0.11 -1.79 3.54 -10.48 -0.04 -1.83 16 8 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 9 C 0.52 13.53 7.06 87.66 0.62 14.15 16 10 O -0.58 -19.89 15.50 -3.03 -0.05 -19.93 16 11 N -0.70 -19.69 4.90 -463.06 -2.27 -21.96 16 12 C 0.15 5.60 4.50 86.38 0.39 5.99 16 13 C 0.05 2.10 0.50 -52.93 -0.03 2.07 16 14 C -0.12 -4.87 8.03 71.98 0.58 -4.29 16 15 C -0.12 -4.99 8.10 71.98 0.58 -4.41 16 16 C -0.53 -26.65 8.01 25.60 0.20 -26.44 16 17 H 0.04 2.29 7.75 -2.91 -0.02 2.27 16 18 C 0.03 1.45 5.13 84.66 0.43 1.89 16 19 N -0.90 -46.50 9.45 21.45 0.20 -46.30 16 20 Si 0.94 41.68 29.54 68.60 2.03 43.70 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.13 -2.28 6.41 30.59 0.20 -2.08 16 25 C 0.51 11.63 7.98 87.90 0.70 12.33 16 26 O -0.56 -15.83 15.64 -3.11 -0.05 -15.88 16 27 C 0.04 0.79 11.53 85.33 0.98 1.77 16 28 N -0.30 -6.65 12.56 -56.77 -0.71 -7.36 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.19 3.99 6.51 -2.91 -0.02 3.97 16 33 H 0.11 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.09 1.82 6.96 -2.39 -0.02 1.80 16 35 H 0.41 9.57 6.16 -92.71 -0.57 8.99 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.43 6.71 -2.39 -0.02 1.42 16 39 H 0.06 2.63 6.25 -2.39 -0.01 2.62 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 2.79 6.10 -2.39 -0.01 2.78 16 43 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 44 H 0.26 13.03 8.31 -92.71 -0.77 12.25 16 45 H 0.11 2.05 7.89 -2.39 -0.02 2.03 16 46 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.69 381.14 3.88 -64.81 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.42 Total: 18.78 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 7.79 Total: 5.69 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -6.26 Total: -97.16 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.10 Total: -35.82 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -68.69 3.88 -64.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.719 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds