Wall clock time and date at job start Tue Mar 31 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 120.00180 * 2 1 4 4 C 1.39709 * 120.00414 * 179.97438 * 2 1 3 5 5 C 1.38994 * 120.44859 * 0.02562 * 4 2 1 6 6 N 1.31801 * 120.82085 * 179.97438 * 5 4 2 7 7 C 1.31804 * 121.87122 * 359.97438 * 6 5 4 8 8 C 1.38956 * 120.82581 * 359.97438 * 7 6 5 9 9 N 1.39752 * 120.45586 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00073 * 212.79654 * 9 8 7 11 11 O 1.21379 * 120.00154 * 5.27224 * 10 9 8 12 12 C 1.49355 * 119.99705 * 185.27184 * 10 9 8 13 13 O 1.21357 * 120.00131 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99727 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00239 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47470 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46662 * 299.99817 * 16 15 14 18 18 C 1.52994 * 109.47290 * 59.99820 * 16 15 14 19 19 C 1.50704 * 109.47034 * 180.02562 * 16 15 14 20 20 H 1.07993 * 119.99953 * 359.97438 * 19 16 15 21 21 C 1.37876 * 119.99798 * 179.97438 * 19 16 15 22 22 N 1.31519 * 120.00142 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 119.99938 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46928 * 90.00264 * 23 21 19 25 25 H 1.48501 * 109.47186 * 210.00310 * 23 21 19 26 26 H 1.48502 * 109.47095 * 330.00336 * 23 21 19 27 27 C 1.39123 * 120.45332 * 179.97438 * 4 2 1 28 28 H 1.08997 * 109.47212 * 270.00252 * 1 2 3 29 29 H 1.08997 * 109.47277 * 30.00330 * 1 2 3 30 30 H 1.09003 * 109.46971 * 150.00509 * 1 2 3 31 31 H 1.09000 * 109.46842 * 239.99913 * 3 2 1 32 32 H 1.08995 * 109.46455 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47495 * 119.99378 * 3 2 1 34 34 H 1.08004 * 119.59211 * 359.97438 * 5 4 2 35 35 H 1.08007 * 119.58446 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99813 * 32.80154 * 9 8 7 37 37 H 0.96999 * 120.00202 * 0.02562 * 14 12 10 38 38 H 1.09005 * 109.47040 * 300.00972 * 15 14 12 39 39 H 1.08998 * 109.47098 * 60.00040 * 15 14 12 40 40 H 1.08997 * 109.47359 * 60.00379 * 17 16 15 41 41 H 1.09002 * 109.46628 * 179.97438 * 17 16 15 42 42 H 1.08991 * 109.47485 * 299.99804 * 17 16 15 43 43 H 1.08997 * 109.47316 * 60.00374 * 18 16 15 44 44 H 1.09002 * 109.47428 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.47671 * 300.00218 * 18 16 15 46 46 H 0.96993 * 120.00231 * 179.97438 * 22 21 19 47 47 H 1.07993 * 120.85679 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 1.4781 -2.4190 0.0005 6 7 2.1298 -3.5647 0.0005 7 6 3.4468 -3.6162 0.0000 8 6 4.2049 -2.4517 -0.0010 9 7 5.6010 -2.5153 -0.0010 10 6 6.3189 -1.5653 0.6303 11 8 5.7543 -0.7086 1.2789 12 6 7.8092 -1.5666 0.5318 13 8 8.3736 -2.4228 -0.1171 14 7 8.5270 -0.6163 1.1627 15 6 9.9888 -0.6172 1.0656 16 6 10.5539 0.5571 1.8672 17 6 10.0062 1.8698 1.3036 18 6 10.1401 0.4197 3.3337 19 6 12.0576 0.5565 1.7668 20 1 12.5599 -0.2055 1.1895 21 6 12.7920 1.5287 2.4122 22 7 12.1803 2.4563 3.1157 23 14 14.6558 1.5275 2.2883 24 1 15.0746 2.3394 1.1175 25 1 15.2345 2.1088 3.5263 26 1 15.1400 0.1335 2.1228 27 6 3.5547 -1.2208 0.0000 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.8241 1.3264 -0.8900 32 1 1.4891 2.0971 -0.0005 33 1 2.8241 1.3266 0.8900 34 1 0.3981 -2.4199 0.0005 35 1 3.9429 -4.5756 0.0005 36 1 6.0533 -3.2432 -0.4555 37 1 8.0758 0.0683 1.6810 38 1 10.3790 -1.5523 1.4674 39 1 10.2836 -0.5197 0.0208 40 1 8.9186 1.8705 1.3758 41 1 10.4085 2.7064 1.8749 42 1 10.3010 1.9677 0.2589 43 1 10.5303 -0.5155 3.7353 44 1 10.5423 1.2565 3.9047 45 1 9.0525 0.4204 3.4060 46 1 12.6969 3.1401 3.5700 47 1 4.1159 -0.2981 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602056193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:49 Heat of formation + Delta-G solvation = -18.841181 kcal Electronic energy + Delta-G solvation = -28498.785045 eV Core-core repulsion = 24489.232958 eV Total energy + Delta-G solvation = -4009.552087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25047 -40.08028 -38.54780 -37.13918 -36.57871 -35.33212 -33.39198 -31.55711 -30.95852 -30.23717 -28.61848 -26.50813 -25.78102 -25.49694 -25.35787 -24.30743 -22.83461 -21.51487 -20.30459 -19.16861 -18.65168 -17.78943 -17.13992 -16.77580 -16.36837 -15.89180 -15.72168 -15.55396 -15.46955 -14.96592 -14.68703 -14.54304 -14.23629 -13.71102 -13.69386 -13.36414 -13.00058 -12.98556 -12.83395 -12.72673 -12.59088 -12.28654 -12.03963 -11.59395 -11.46140 -11.24002 -11.17595 -10.92449 -10.74378 -10.63206 -10.45604 -10.24907 -9.98349 -9.71283 -9.57212 -9.29985 -8.85852 -8.75451 -8.68487 -8.41951 -7.69698 -6.06977 -4.17906 0.78721 1.23802 1.60669 2.31476 2.72227 3.25304 3.26509 3.32711 3.35967 3.68748 3.73370 4.34914 4.41380 4.58064 4.60088 4.70443 4.74973 4.81901 4.98051 5.06765 5.10364 5.19880 5.25481 5.29208 5.46727 5.70856 5.76939 5.95878 6.03470 6.16513 6.37040 6.40208 6.52392 6.71735 6.78240 6.78583 6.85008 6.88606 6.94320 7.01714 7.27129 7.49278 7.49434 7.64169 7.78212 7.86126 7.94745 8.05672 8.20382 8.33594 8.82346 9.48309 10.94494 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002274 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.947960 B =12307.806129 C =13241.526464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.629 5.629 3 C 0.092 3.908 4 C 0.185 3.815 5 C 0.007 3.993 6 N -0.425 5.425 7 C 0.019 3.981 8 C 0.148 3.852 9 N -0.645 5.645 10 C 0.509 3.491 11 O -0.498 6.498 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.677 5.677 15 C 0.127 3.873 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.508 4.508 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.885 5.885 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.161 4.161 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.426 0.574 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.008 0.992 41 H 0.087 0.913 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.261 0.739 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 -4.623 -6.221 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.341 5.341 3 C -0.051 4.051 4 C 0.080 3.920 5 C -0.156 4.156 6 N -0.132 5.132 7 C -0.143 4.143 8 C 0.050 3.950 9 N -0.292 5.292 10 C 0.292 3.708 11 O -0.370 6.370 12 C 0.277 3.723 13 O -0.408 6.408 14 N -0.328 5.328 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.546 4.546 20 H 0.077 0.923 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.265 0.735 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.106 0.894 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.106 0.894 45 H 0.027 0.973 46 H 0.071 0.929 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.194 -4.998 -6.082 23.548 hybrid contribution 1.524 0.895 0.012 1.767 sum -20.670 -4.103 -6.069 21.930 Atomic orbital electron populations 1.21721 0.79006 1.02873 1.01510 1.46303 1.05134 1.02958 1.79655 1.21700 0.97143 0.84357 1.01949 1.18699 0.91247 0.87296 0.94770 1.22285 1.00023 0.86053 1.07288 1.67473 1.08848 1.28212 1.08704 1.22296 0.89326 0.96700 1.06025 1.18562 0.82930 0.94696 0.98802 1.43144 1.04126 1.28687 1.53246 1.20745 0.89341 0.81677 0.79060 1.90772 1.72306 1.36082 1.37876 1.19688 0.86762 0.83760 0.82082 1.90754 1.71656 1.37281 1.41068 1.46230 1.09561 1.28467 1.48561 1.21999 0.74700 1.01459 1.01288 1.18385 0.95364 0.89296 0.91410 1.21863 0.95438 1.02115 0.99744 1.21862 0.95690 1.02126 0.99510 1.20938 0.89768 1.12447 1.31469 0.92302 1.24884 0.98529 0.95243 0.94840 1.69802 1.35049 1.15114 1.32312 0.86548 0.85409 0.78311 0.77463 1.20690 1.21242 1.19875 1.21062 0.92398 0.98441 1.07382 0.93015 0.91191 0.91150 0.92628 0.90577 0.92025 0.82884 0.82590 0.73506 0.75131 0.91789 0.91810 0.97352 0.89388 0.95298 0.95267 0.89395 0.97316 0.92903 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.17 59.84 0.61 1.11 16 2 N -0.63 -5.47 3.41 -187.45 -0.64 -6.11 16 3 C 0.09 0.71 9.43 59.85 0.56 1.27 16 4 C 0.19 2.02 6.56 -83.66 -0.55 1.47 16 5 C 0.01 0.07 10.38 -17.28 -0.18 -0.11 16 6 N -0.43 -5.03 10.35 -12.89 -0.13 -5.16 16 7 C 0.02 0.21 11.11 -17.30 -0.19 0.01 16 8 C 0.15 1.78 6.31 -83.62 -0.53 1.25 16 9 N -0.64 -7.71 5.34 -10.22 -0.05 -7.77 16 10 C 0.51 7.43 7.65 -11.63 -0.09 7.34 16 11 O -0.50 -8.01 14.16 5.47 0.08 -7.93 16 12 C 0.50 8.24 7.89 -11.63 -0.09 8.15 16 13 O -0.53 -9.58 16.48 5.49 0.09 -9.49 16 14 N -0.68 -11.91 4.95 -60.76 -0.30 -12.21 16 15 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 16 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 17 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 18 C -0.13 -2.99 8.08 37.15 0.30 -2.69 16 19 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 22 N -0.88 -23.21 9.35 55.43 0.52 -22.69 16 23 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.16 -1.99 8.00 -38.89 -0.31 -2.30 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 30 H 0.07 0.33 6.22 -51.93 -0.32 0.00 16 31 H 0.06 0.44 7.99 -51.93 -0.41 0.02 16 32 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 33 H 0.06 0.55 7.99 -51.93 -0.41 0.14 16 34 H 0.15 1.21 6.15 -52.48 -0.32 0.89 16 35 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.43 4.28 8.30 -40.82 -0.34 3.95 16 37 H 0.41 7.09 5.63 -40.82 -0.23 6.86 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 41 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 45 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 46 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 47 H 0.15 1.93 5.30 -52.49 -0.28 1.65 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -29.25 380.68 -6.92 -36.16 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.56 Total: 9.15 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.63 Total: 5.03 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.61 Total: -53.94 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.25 -6.92 -36.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602056193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.321 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds