Wall clock time and date at job start Tue Mar 31 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 120.00180 * 2 1 4 4 C 1.39709 * 120.00414 * 179.97438 * 2 1 3 5 5 C 1.38994 * 120.44859 * 0.02562 * 4 2 1 6 6 N 1.31801 * 120.82085 * 179.97438 * 5 4 2 7 7 C 1.31804 * 121.87122 * 359.97438 * 6 5 4 8 8 C 1.38956 * 120.82581 * 359.97438 * 7 6 5 9 9 N 1.39752 * 120.45586 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00073 * 212.79654 * 9 8 7 11 11 O 1.21379 * 120.00154 * 5.27224 * 10 9 8 12 12 C 1.49355 * 119.99705 * 185.27184 * 10 9 8 13 13 O 1.21357 * 120.00131 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99727 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00239 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47470 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46662 * 299.99817 * 16 15 14 18 18 C 1.52994 * 109.47290 * 59.99820 * 16 15 14 19 19 C 1.50704 * 109.47034 * 180.02562 * 16 15 14 20 20 H 1.07993 * 119.99953 * 359.97438 * 19 16 15 21 21 C 1.37876 * 119.99798 * 179.97438 * 19 16 15 22 22 N 1.31519 * 120.00142 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 119.99938 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46928 * 90.00264 * 23 21 19 25 25 H 1.48501 * 109.47186 * 210.00310 * 23 21 19 26 26 H 1.48502 * 109.47095 * 330.00336 * 23 21 19 27 27 C 1.39123 * 120.45332 * 179.97438 * 4 2 1 28 28 H 1.08997 * 109.47212 * 270.00252 * 1 2 3 29 29 H 1.08997 * 109.47277 * 30.00330 * 1 2 3 30 30 H 1.09003 * 109.46971 * 150.00509 * 1 2 3 31 31 H 1.09000 * 109.46842 * 239.99913 * 3 2 1 32 32 H 1.08995 * 109.46455 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47495 * 119.99378 * 3 2 1 34 34 H 1.08004 * 119.59211 * 359.97438 * 5 4 2 35 35 H 1.08007 * 119.58446 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99813 * 32.80154 * 9 8 7 37 37 H 0.96999 * 120.00202 * 0.02562 * 14 12 10 38 38 H 1.09005 * 109.47040 * 300.00972 * 15 14 12 39 39 H 1.08998 * 109.47098 * 60.00040 * 15 14 12 40 40 H 1.08997 * 109.47359 * 60.00379 * 17 16 15 41 41 H 1.09002 * 109.46628 * 179.97438 * 17 16 15 42 42 H 1.08991 * 109.47485 * 299.99804 * 17 16 15 43 43 H 1.08997 * 109.47316 * 60.00374 * 18 16 15 44 44 H 1.09002 * 109.47428 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.47671 * 300.00218 * 18 16 15 46 46 H 0.96993 * 120.00231 * 179.97438 * 22 21 19 47 47 H 1.07993 * 120.85679 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 1.4781 -2.4190 0.0005 6 7 2.1298 -3.5647 0.0005 7 6 3.4468 -3.6162 0.0000 8 6 4.2049 -2.4517 -0.0010 9 7 5.6010 -2.5153 -0.0010 10 6 6.3189 -1.5653 0.6303 11 8 5.7543 -0.7086 1.2789 12 6 7.8092 -1.5666 0.5318 13 8 8.3736 -2.4228 -0.1171 14 7 8.5270 -0.6163 1.1627 15 6 9.9888 -0.6172 1.0656 16 6 10.5539 0.5571 1.8672 17 6 10.0062 1.8698 1.3036 18 6 10.1401 0.4197 3.3337 19 6 12.0576 0.5565 1.7668 20 1 12.5599 -0.2055 1.1895 21 6 12.7920 1.5287 2.4122 22 7 12.1803 2.4563 3.1157 23 14 14.6558 1.5275 2.2883 24 1 15.0746 2.3394 1.1175 25 1 15.2345 2.1088 3.5263 26 1 15.1400 0.1335 2.1228 27 6 3.5547 -1.2208 0.0000 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.8241 1.3264 -0.8900 32 1 1.4891 2.0971 -0.0005 33 1 2.8241 1.3266 0.8900 34 1 0.3981 -2.4199 0.0005 35 1 3.9429 -4.5756 0.0005 36 1 6.0533 -3.2432 -0.4555 37 1 8.0758 0.0683 1.6810 38 1 10.3790 -1.5523 1.4674 39 1 10.2836 -0.5197 0.0208 40 1 8.9186 1.8705 1.3758 41 1 10.4085 2.7064 1.8749 42 1 10.3010 1.9677 0.2589 43 1 10.5303 -0.5155 3.7353 44 1 10.5423 1.2565 3.9047 45 1 9.0525 0.4204 3.4060 46 1 12.6969 3.1401 3.5700 47 1 4.1159 -0.2981 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602056193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:48 Heat of formation + Delta-G solvation = -38.153680 kcal Electronic energy + Delta-G solvation = -28499.622498 eV Core-core repulsion = 24489.232958 eV Total energy + Delta-G solvation = -4010.389540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31358 -41.14218 -39.80773 -38.24052 -37.87269 -36.39708 -35.01738 -32.77413 -32.38633 -31.07176 -29.23819 -27.97360 -27.59449 -27.24121 -26.17996 -25.56139 -23.86286 -22.38573 -21.51390 -20.74516 -20.00152 -18.72431 -18.22025 -17.83314 -17.64587 -17.32965 -16.91916 -16.67597 -16.47823 -16.22117 -16.04831 -15.57206 -15.24165 -15.13666 -14.78701 -14.61716 -14.40031 -14.16379 -14.05844 -13.54377 -13.36334 -13.23827 -13.22511 -13.13450 -12.86812 -12.70900 -12.59702 -12.53730 -12.28470 -12.15538 -12.12499 -11.51525 -11.39902 -11.32705 -11.02961 -10.73012 -10.46425 -10.41710 -10.17279 -9.65826 -8.41075 -8.02028 -6.18288 -0.21778 0.38550 0.48854 1.14454 1.44265 1.47621 1.55339 2.00121 2.08216 2.43421 2.56841 2.85196 3.22196 3.29682 3.69100 3.86570 3.93481 3.96270 4.12051 4.32640 4.32940 4.46678 4.47006 4.49611 4.67004 4.73616 4.81992 4.85696 4.89344 4.91327 4.98630 5.02930 5.03794 5.08320 5.16508 5.17654 5.46388 5.52267 5.64185 5.67561 5.78178 6.10999 6.14936 6.18036 6.26848 6.29478 6.40638 6.57664 6.81920 6.88842 7.02111 7.49859 8.97220 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002274 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.947960 B =12307.806129 C =13241.526464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.631 5.631 3 C 0.090 3.910 4 C 0.181 3.819 5 C 0.009 3.991 6 N -0.440 5.440 7 C 0.016 3.984 8 C 0.134 3.866 9 N -0.628 5.628 10 C 0.517 3.483 11 O -0.514 6.514 12 C 0.504 3.496 13 O -0.544 6.544 14 N -0.677 5.677 15 C 0.142 3.858 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.525 4.525 20 H 0.052 0.948 21 C 0.026 3.974 22 N -0.901 5.901 23 Si 0.947 3.053 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.178 4.178 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.435 0.565 37 H 0.414 0.586 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.260 0.740 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.617 -5.133 -6.767 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C -0.053 4.053 4 C 0.074 3.926 5 C -0.155 4.155 6 N -0.147 5.147 7 C -0.145 4.145 8 C 0.037 3.963 9 N -0.276 5.276 10 C 0.299 3.701 11 O -0.389 6.389 12 C 0.284 3.716 13 O -0.422 6.422 14 N -0.329 5.329 15 C 0.020 3.980 16 C 0.050 3.950 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.563 4.563 20 H 0.071 0.929 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.774 3.226 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.211 4.211 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.063 0.937 34 H 0.196 0.804 35 H 0.195 0.805 36 H 0.276 0.724 37 H 0.252 0.748 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.077 -5.520 -6.646 25.580 hybrid contribution 1.971 1.062 0.153 2.244 sum -22.106 -4.458 -6.493 23.467 Atomic orbital electron populations 1.21962 0.76965 1.04413 1.02365 1.46580 1.06466 1.02409 1.78612 1.21753 0.97708 0.84968 1.00899 1.18818 0.90880 0.88477 0.94387 1.22706 1.01196 0.85538 1.06054 1.67536 1.09087 1.28844 1.09265 1.22586 0.89258 0.97181 1.05469 1.18664 0.82545 0.95141 0.99973 1.42971 1.04295 1.28007 1.52285 1.20240 0.88230 0.82164 0.79455 1.90776 1.72166 1.36980 1.38971 1.19932 0.87650 0.82897 0.81138 1.90746 1.72301 1.37685 1.41486 1.46050 1.08560 1.29122 1.49195 1.21600 0.76149 0.99985 1.00312 1.18379 0.94264 0.90406 0.91960 1.21713 0.96738 1.00903 0.98880 1.21716 0.96937 1.00717 0.98910 1.21242 0.91533 1.12252 1.31304 0.92948 1.25489 1.01851 0.95184 0.94834 1.69921 1.35998 1.15384 1.32701 0.85723 0.81485 0.78126 0.77252 1.20530 1.21193 1.19755 1.21098 0.93319 0.98141 1.08528 0.92407 0.89230 0.90130 0.93108 0.87889 0.93706 0.80390 0.80539 0.72423 0.74805 0.92454 0.92399 0.95089 0.91832 0.95679 0.95711 0.91829 0.95139 0.93075 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.17 127.77 1.30 2.00 16 2 N -0.63 -9.85 3.41 -746.96 -2.55 -12.39 16 3 C 0.09 1.29 9.43 127.77 1.20 2.49 16 4 C 0.18 3.71 6.56 38.28 0.25 3.96 16 5 C 0.01 0.16 10.38 84.88 0.88 1.04 16 6 N -0.44 -9.63 10.35 -194.70 -2.01 -11.64 16 7 C 0.02 0.34 11.11 84.87 0.94 1.28 16 8 C 0.13 3.10 6.31 38.28 0.24 3.34 16 9 N -0.63 -14.43 5.34 -304.58 -1.63 -16.06 16 10 C 0.52 14.71 7.65 87.24 0.67 15.38 16 11 O -0.51 -16.33 14.16 -3.34 -0.05 -16.38 16 12 C 0.50 16.27 7.89 87.24 0.69 16.96 16 13 O -0.54 -19.21 16.48 -3.27 -0.05 -19.26 16 14 N -0.68 -23.36 4.95 -464.51 -2.30 -25.66 16 15 C 0.14 5.67 4.50 86.38 0.39 6.06 16 16 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 17 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 18 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 19 C -0.52 -26.77 8.01 25.60 0.21 -26.56 16 20 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 21 C 0.03 1.35 5.15 84.65 0.44 1.79 16 22 N -0.90 -47.73 9.35 21.45 0.20 -47.53 16 23 Si 0.95 41.75 29.54 68.60 2.03 43.77 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C -0.18 -4.32 8.00 22.72 0.18 -4.14 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.41 7.92 -2.39 -0.02 0.39 16 30 H 0.08 0.50 6.22 -2.39 -0.01 0.49 16 31 H 0.05 0.77 7.99 -2.39 -0.02 0.75 16 32 H 0.10 0.88 7.79 -2.39 -0.02 0.86 16 33 H 0.04 0.80 7.99 -2.39 -0.02 0.78 16 34 H 0.18 2.33 6.15 -2.91 -0.02 2.31 16 35 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.44 8.23 8.30 -92.71 -0.77 7.46 16 37 H 0.41 13.88 5.63 -92.71 -0.52 13.36 16 38 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 41 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 42 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 47 H 0.13 3.55 5.30 -2.91 -0.02 3.54 16 Total: -1.00 -61.86 380.68 1.89 -59.97 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.27 Total: 29.22 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 8.52 Total: 15.96 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -8.29 Total: -113.28 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.10 Total: -35.64 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -61.86 1.89 -59.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602056193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.815 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds