Wall clock time and date at job start Tue Mar 31 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47086 * 2 1 4 4 C 1.50704 * 109.46697 * 119.99988 * 2 1 3 5 5 N 1.30501 * 125.64948 * 300.17172 * 4 2 1 6 6 C 1.34127 * 109.25722 * 180.29419 * 5 4 2 7 7 C 1.34671 * 108.02123 * 359.72417 * 6 5 4 8 8 N 1.35043 * 125.65159 * 119.99940 * 4 2 1 9 9 C 1.46497 * 126.39641 * 359.97438 * 8 4 2 10 10 C 1.50701 * 109.47054 * 84.71500 * 9 8 4 11 11 O 1.21282 * 120.00381 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99884 * 180.02562 * 10 9 8 13 13 C 1.46968 * 120.59452 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63820 * 235.20309 * 13 12 10 15 15 N 1.46966 * 108.63402 * 310.57615 * 14 13 12 16 16 C 1.34777 * 120.59464 * 235.20106 * 15 14 13 17 17 O 1.21686 * 119.99982 * 5.22418 * 16 15 14 18 18 C 1.46371 * 120.00043 * 185.21833 * 16 15 14 19 19 H 1.07992 * 120.00360 * 354.99064 * 18 16 15 20 20 C 1.40054 * 119.99966 * 174.98237 * 18 16 15 21 21 N 1.30673 * 119.99691 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00179 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47393 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47198 * 300.00255 * 22 20 18 25 25 H 1.48507 * 109.47275 * 60.00111 * 22 20 18 26 26 C 1.46966 * 118.81172 * 55.47838 * 15 14 13 27 27 C 1.46966 * 120.59464 * 359.97438 * 12 10 9 28 28 H 1.08999 * 109.47003 * 300.00404 * 1 2 3 29 29 H 1.08999 * 109.46611 * 60.00107 * 1 2 3 30 30 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47003 * 239.99596 * 2 1 3 32 32 H 1.08999 * 109.47308 * 299.99466 * 3 2 1 33 33 H 1.08999 * 109.47530 * 59.99919 * 3 2 1 34 34 H 1.09005 * 109.46760 * 179.97438 * 3 2 1 35 35 H 1.07997 * 125.99404 * 179.72949 * 6 5 4 36 36 H 1.07995 * 126.59735 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47577 * 324.71737 * 9 8 4 38 38 H 1.08997 * 109.47582 * 204.71346 * 9 8 4 39 39 H 1.09002 * 109.60813 * 115.45439 * 13 12 10 40 40 H 1.08999 * 109.60718 * 354.94867 * 13 12 10 41 41 H 1.08998 * 109.61339 * 190.82833 * 14 13 12 42 42 H 1.09007 * 109.60981 * 70.31545 * 14 13 12 43 43 H 0.97000 * 119.99587 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.61294 * 64.26706 * 26 15 14 45 45 H 1.09002 * 109.60786 * 184.78204 * 26 15 14 46 46 H 1.09007 * 109.60611 * 244.54055 * 27 12 10 47 47 H 1.08995 * 109.60794 * 4.88011 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7833 -0.3639 2.4638 6 6 2.3967 -1.2184 3.2959 7 6 3.0458 -2.1327 2.5500 8 7 2.8119 -1.8131 1.2397 9 6 3.3180 -2.5297 0.0664 10 6 4.5862 -1.8730 -0.4148 11 8 5.0239 -0.9018 0.1649 12 7 5.2334 -2.3645 -1.4900 13 6 6.4708 -1.7341 -1.9709 14 6 6.2935 -1.3720 -3.4506 15 7 5.7747 -2.5482 -4.1629 16 6 6.4219 -3.0396 -5.2381 17 8 7.4939 -2.5694 -5.5705 18 6 5.8354 -4.1391 -6.0060 19 1 4.9253 -4.6104 -5.6655 20 6 6.4543 -4.5798 -7.1825 21 7 7.5556 -4.0098 -7.5944 22 14 5.7055 -5.9824 -8.1629 23 1 6.5451 -6.2555 -9.3568 24 1 5.6397 -7.1995 -7.3146 25 1 4.3358 -5.6071 -8.5971 26 6 4.5342 -3.1752 -3.6855 27 6 4.7143 -3.5403 -2.2026 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4424 0.0005 35 1 2.3742 -1.1800 4.3750 36 1 3.6375 -2.9590 2.9153 37 1 2.5708 -2.5016 -0.7267 38 1 3.5245 -3.5657 0.3346 39 1 7.3024 -2.4303 -1.8617 40 1 6.6689 -0.8305 -1.3944 41 1 7.2551 -1.0825 -3.8742 42 1 5.5869 -0.5472 -3.5433 43 1 7.9841 -4.3148 -8.4094 44 1 3.7053 -2.4758 -3.7945 45 1 4.3338 -4.0769 -4.2642 46 1 5.4206 -4.3654 -2.1100 47 1 3.7539 -3.8314 -1.7772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602123044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:57 Heat of formation + Delta-G solvation = 3.117608 kcal Electronic energy + Delta-G solvation = -29565.193864 eV Core-core repulsion = 25556.593982 eV Total energy + Delta-G solvation = -4008.599882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30978 -40.10310 -38.10023 -36.02767 -35.47509 -34.20919 -33.20590 -32.60493 -31.30122 -29.01855 -28.33091 -27.27303 -27.25862 -25.90563 -23.44525 -23.00257 -22.36311 -21.40836 -20.35605 -19.22229 -18.67592 -17.74450 -17.36569 -16.35097 -16.10004 -15.67415 -15.52671 -14.99799 -14.95282 -14.66811 -14.41340 -14.30683 -14.19213 -13.80260 -13.66979 -13.55742 -13.33284 -12.98800 -12.73906 -12.51263 -12.24829 -12.14826 -11.76979 -11.63136 -11.55366 -11.32393 -11.31084 -11.17810 -11.09443 -11.06327 -10.89360 -10.39615 -10.35227 -10.22238 -10.01240 -9.49490 -9.03575 -8.85748 -8.40413 -7.77469 -7.41479 -6.34939 -4.81979 1.85978 2.35593 2.45433 2.97623 3.04415 3.10393 3.11965 3.12527 3.93847 4.15694 4.21518 4.29735 4.34614 4.40581 4.51461 4.63206 4.88919 4.99641 5.00170 5.10548 5.11560 5.33333 5.37828 5.43219 5.44943 5.53711 5.55166 5.69725 5.74182 5.75915 5.78142 5.83010 5.86480 6.06155 6.11745 6.18358 6.19532 6.24302 6.36942 6.50659 6.69536 7.01819 7.26378 7.29226 7.35766 7.91480 7.95270 8.05666 8.13668 8.86037 9.21871 10.40137 10.58737 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002693 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.698794 B =10394.846278 C =10602.319417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.138 4.138 4 C 0.230 3.770 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.053 4.053 8 N -0.441 5.441 9 C 0.084 3.916 10 C 0.495 3.505 11 O -0.527 6.527 12 N -0.599 5.599 13 C 0.100 3.900 14 C 0.108 3.892 15 N -0.643 5.643 16 C 0.558 3.442 17 O -0.574 6.574 18 C -0.546 4.546 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.765 5.765 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.109 3.891 27 C 0.085 3.915 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.271 0.729 44 H 0.049 0.951 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 0.309 14.163 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.196 4.196 4 C -0.032 4.032 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.185 4.185 8 N -0.123 5.123 9 C -0.043 4.043 10 C 0.281 3.719 11 O -0.403 6.403 12 N -0.333 5.333 13 C -0.023 4.023 14 C -0.017 4.017 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.456 6.456 18 C -0.582 4.582 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.393 5.393 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.192 1.192 25 H -0.192 1.192 26 C -0.016 4.016 27 C -0.039 4.039 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.126 0.874 46 H 0.098 0.902 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.853 1.682 14.264 18.622 hybrid contribution 0.259 -1.708 -0.643 1.844 sum -11.593 -0.027 13.622 17.887 Atomic orbital electron populations 1.21788 0.93065 1.02038 1.02794 1.19540 0.96423 0.96191 0.90709 1.21749 1.01735 0.93802 1.02363 1.23157 0.96313 0.88135 0.95642 1.70169 1.24603 1.26897 0.98925 1.22201 1.01365 0.94547 0.99450 1.22609 1.08080 1.05220 0.82603 1.44891 1.38295 1.23289 1.05852 1.21743 0.96233 0.97453 0.88859 1.20601 0.85667 0.84805 0.80870 1.90760 1.67100 1.26372 1.56109 1.48095 1.26128 1.30749 1.28340 1.22140 0.85023 0.98946 0.96160 1.21510 1.01276 0.89271 0.89645 1.48211 1.26152 1.31125 1.32700 1.18296 0.83974 0.83377 0.77867 1.90609 1.22662 1.63349 1.68957 1.20892 1.11085 1.17800 1.08429 0.90922 1.25732 0.93937 0.96498 0.97109 1.69989 1.14368 1.35639 1.19345 0.86430 0.79664 0.81455 0.79241 1.20488 1.19191 1.19194 1.21874 0.88177 0.99813 0.91781 1.22487 0.99308 0.87611 0.94464 0.91328 0.91778 0.92837 0.90582 0.91965 0.91532 0.92179 0.81472 0.81174 0.86111 0.85990 0.91017 0.88920 0.88397 0.93431 0.91831 0.93310 0.87370 0.90202 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.55 9.17 37.15 0.34 -1.21 16 4 C 0.23 2.97 6.39 -155.41 -0.99 1.98 16 5 N -0.49 -6.91 11.25 -10.81 -0.12 -7.03 16 6 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 7 C -0.05 -0.60 11.58 -16.56 -0.19 -0.79 16 8 N -0.44 -5.17 2.24 -115.19 -0.26 -5.43 16 9 C 0.08 0.79 4.51 -5.19 -0.02 0.76 16 10 C 0.50 6.48 7.77 -10.98 -0.09 6.39 16 11 O -0.53 -8.99 15.82 5.56 0.09 -8.90 16 12 N -0.60 -7.92 2.95 -172.24 -0.51 -8.43 16 13 C 0.10 1.54 6.59 -3.60 -0.02 1.52 16 14 C 0.11 1.95 6.60 -3.60 -0.02 1.93 16 15 N -0.64 -13.01 2.94 -173.90 -0.51 -13.52 16 16 C 0.56 14.61 7.62 -12.99 -0.10 14.51 16 17 O -0.57 -17.47 14.45 5.20 0.08 -17.40 16 18 C -0.55 -13.95 8.87 -35.63 -0.32 -14.27 16 19 H 0.07 1.63 5.66 -52.49 -0.30 1.33 16 20 C 0.09 2.28 5.50 -17.36 -0.10 2.18 16 21 N -0.77 -21.73 11.84 55.55 0.66 -21.07 16 22 Si 0.91 18.61 29.56 -169.99 -5.02 13.59 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 C 0.11 1.64 6.51 -3.39 -0.02 1.62 16 27 C 0.09 0.98 6.52 -3.39 -0.02 0.96 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.77 6.85 -51.93 -0.36 0.41 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 0.87 6.88 -51.93 -0.36 0.51 16 38 H 0.12 0.80 7.90 -51.93 -0.41 0.39 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.43 6.99 -51.93 -0.36 1.06 16 41 H 0.10 2.00 6.99 -51.93 -0.36 1.63 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 1.68 5.34 -51.93 -0.28 1.40 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.59 5.91 -51.93 -0.31 0.29 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -36.33 382.65 -8.50 -44.83 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.94 Total: 3.86 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -1.72 Total: 13.73 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.74 Total: -55.48 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: 0.16 Total: -26.30 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.33 -8.50 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602123044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.951 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds