Wall clock time and date at job start Tue Mar 31 2020 17:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47086 * 2 1 4 4 C 1.50704 * 109.46697 * 119.99988 * 2 1 3 5 5 N 1.30501 * 125.64948 * 300.17172 * 4 2 1 6 6 C 1.34127 * 109.25722 * 180.29419 * 5 4 2 7 7 C 1.34671 * 108.02123 * 359.72417 * 6 5 4 8 8 N 1.35043 * 125.65159 * 119.99940 * 4 2 1 9 9 C 1.46497 * 126.39641 * 359.97438 * 8 4 2 10 10 C 1.50701 * 109.47054 * 84.71500 * 9 8 4 11 11 O 1.21282 * 120.00381 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99884 * 180.02562 * 10 9 8 13 13 C 1.46968 * 120.59452 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63820 * 235.20309 * 13 12 10 15 15 N 1.46966 * 108.63402 * 310.57615 * 14 13 12 16 16 C 1.34777 * 120.59464 * 235.20106 * 15 14 13 17 17 O 1.21686 * 119.99982 * 5.22418 * 16 15 14 18 18 C 1.46371 * 120.00043 * 185.21833 * 16 15 14 19 19 H 1.07992 * 120.00360 * 354.99064 * 18 16 15 20 20 C 1.40054 * 119.99966 * 174.98237 * 18 16 15 21 21 N 1.30673 * 119.99691 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00179 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47393 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47198 * 300.00255 * 22 20 18 25 25 H 1.48507 * 109.47275 * 60.00111 * 22 20 18 26 26 C 1.46966 * 118.81172 * 55.47838 * 15 14 13 27 27 C 1.46966 * 120.59464 * 359.97438 * 12 10 9 28 28 H 1.08999 * 109.47003 * 300.00404 * 1 2 3 29 29 H 1.08999 * 109.46611 * 60.00107 * 1 2 3 30 30 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47003 * 239.99596 * 2 1 3 32 32 H 1.08999 * 109.47308 * 299.99466 * 3 2 1 33 33 H 1.08999 * 109.47530 * 59.99919 * 3 2 1 34 34 H 1.09005 * 109.46760 * 179.97438 * 3 2 1 35 35 H 1.07997 * 125.99404 * 179.72949 * 6 5 4 36 36 H 1.07995 * 126.59735 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47577 * 324.71737 * 9 8 4 38 38 H 1.08997 * 109.47582 * 204.71346 * 9 8 4 39 39 H 1.09002 * 109.60813 * 115.45439 * 13 12 10 40 40 H 1.08999 * 109.60718 * 354.94867 * 13 12 10 41 41 H 1.08998 * 109.61339 * 190.82833 * 14 13 12 42 42 H 1.09007 * 109.60981 * 70.31545 * 14 13 12 43 43 H 0.97000 * 119.99587 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.61294 * 64.26706 * 26 15 14 45 45 H 1.09002 * 109.60786 * 184.78204 * 26 15 14 46 46 H 1.09007 * 109.60611 * 244.54055 * 27 12 10 47 47 H 1.08995 * 109.60794 * 4.88011 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7833 -0.3639 2.4638 6 6 2.3967 -1.2184 3.2959 7 6 3.0458 -2.1327 2.5500 8 7 2.8119 -1.8131 1.2397 9 6 3.3180 -2.5297 0.0664 10 6 4.5862 -1.8730 -0.4148 11 8 5.0239 -0.9018 0.1649 12 7 5.2334 -2.3645 -1.4900 13 6 6.4708 -1.7341 -1.9709 14 6 6.2935 -1.3720 -3.4506 15 7 5.7747 -2.5482 -4.1629 16 6 6.4219 -3.0396 -5.2381 17 8 7.4939 -2.5694 -5.5705 18 6 5.8354 -4.1391 -6.0060 19 1 4.9253 -4.6104 -5.6655 20 6 6.4543 -4.5798 -7.1825 21 7 7.5556 -4.0098 -7.5944 22 14 5.7055 -5.9824 -8.1629 23 1 6.5451 -6.2555 -9.3568 24 1 5.6397 -7.1995 -7.3146 25 1 4.3358 -5.6071 -8.5971 26 6 4.5342 -3.1752 -3.6855 27 6 4.7143 -3.5403 -2.2026 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4424 0.0005 35 1 2.3742 -1.1800 4.3750 36 1 3.6375 -2.9590 2.9153 37 1 2.5708 -2.5016 -0.7267 38 1 3.5245 -3.5657 0.3346 39 1 7.3024 -2.4303 -1.8617 40 1 6.6689 -0.8305 -1.3944 41 1 7.2551 -1.0825 -3.8742 42 1 5.5869 -0.5472 -3.5433 43 1 7.9841 -4.3148 -8.4094 44 1 3.7053 -2.4758 -3.7945 45 1 4.3338 -4.0769 -4.2642 46 1 5.4206 -4.3654 -2.1100 47 1 3.7539 -3.8314 -1.7772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602123044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:56 Heat of formation + Delta-G solvation = -21.293419 kcal Electronic energy + Delta-G solvation = -29566.252405 eV Core-core repulsion = 25556.593982 eV Total energy + Delta-G solvation = -4009.658424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.16261 -41.24946 -39.66597 -37.57616 -36.27376 -35.15024 -34.77457 -34.45104 -32.58035 -29.89929 -29.40229 -28.79815 -28.04621 -27.39872 -24.71486 -23.93122 -23.60996 -22.33516 -21.67613 -20.40930 -19.78485 -18.92330 -18.32385 -17.97341 -17.46596 -16.98455 -16.63558 -16.18189 -16.01015 -15.95797 -15.77252 -15.62962 -15.23359 -14.74691 -14.73790 -14.49901 -14.43675 -14.19698 -13.80305 -13.66597 -13.46092 -13.31379 -13.12539 -13.01133 -12.86666 -12.67612 -12.40337 -12.36889 -12.35113 -12.12860 -12.02093 -11.96917 -11.89849 -11.39939 -10.90997 -10.89775 -10.45473 -10.14521 -9.78602 -9.25537 -9.02161 -8.27491 -6.82376 0.97563 1.37189 1.44398 1.46925 1.58442 1.62590 2.00222 2.23034 2.26159 2.48090 2.80898 3.25628 3.41671 3.60475 3.69718 3.75536 3.90921 3.92897 4.02347 4.13050 4.17164 4.20267 4.30954 4.35516 4.45693 4.49416 4.60933 4.64942 4.74163 4.76770 4.79356 4.84624 4.90061 4.95792 5.06197 5.08123 5.26921 5.28411 5.33146 5.42245 5.42791 5.72552 5.87966 6.13390 6.13655 6.27809 6.36409 6.90025 6.93497 7.18779 7.41308 8.47179 8.68511 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002693 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.698794 B =10394.846278 C =10602.319417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.133 4.133 4 C 0.215 3.785 5 N -0.522 5.522 6 C -0.055 4.055 7 C -0.050 4.050 8 N -0.445 5.445 9 C 0.085 3.915 10 C 0.498 3.502 11 O -0.572 6.572 12 N -0.598 5.598 13 C 0.114 3.886 14 C 0.112 3.888 15 N -0.645 5.645 16 C 0.541 3.459 17 O -0.634 6.634 18 C -0.564 4.564 19 H 0.104 0.896 20 C 0.028 3.972 21 N -0.826 5.826 22 Si 0.995 3.005 23 H -0.284 1.284 24 H -0.250 1.250 25 H -0.251 1.251 26 C 0.100 3.900 27 C 0.093 3.907 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.183 0.817 36 H 0.201 0.799 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.272 0.728 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 -2.368 14.727 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 C -0.191 4.191 4 C -0.048 4.048 5 N -0.241 5.241 6 C -0.201 4.201 7 C -0.182 4.182 8 N -0.127 5.127 9 C -0.040 4.040 10 C 0.286 3.714 11 O -0.451 6.451 12 N -0.331 5.331 13 C -0.010 4.010 14 C -0.013 4.013 15 N -0.382 5.382 16 C 0.347 3.653 17 O -0.521 6.521 18 C -0.600 4.600 19 H 0.122 0.878 20 C -0.187 4.187 21 N -0.455 5.455 22 Si 0.814 3.186 23 H -0.209 1.209 24 H -0.173 1.173 25 H -0.175 1.175 26 C -0.023 4.023 27 C -0.030 4.030 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.200 0.800 36 H 0.218 0.782 37 H 0.170 0.830 38 H 0.180 0.820 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.085 -1.010 14.888 21.219 hybrid contribution 1.248 -0.771 -0.725 1.637 sum -13.837 -1.781 14.164 19.880 Atomic orbital electron populations 1.21728 0.91647 1.02606 1.02941 1.19651 0.97560 0.95388 0.90453 1.21691 0.99806 0.94851 1.02788 1.23503 0.96727 0.88756 0.95825 1.70122 1.25875 1.28045 1.00016 1.22639 1.02051 0.94978 1.00463 1.23124 1.07241 1.05405 0.82411 1.45053 1.37904 1.23151 1.06621 1.22049 0.94503 0.98435 0.89062 1.21279 0.86292 0.83990 0.79867 1.90760 1.68456 1.28466 1.57375 1.48101 1.25239 1.31098 1.28692 1.21756 0.86334 0.98940 0.93967 1.21467 0.99717 0.89031 0.91094 1.48036 1.27375 1.31304 1.31488 1.18742 0.83646 0.83728 0.79152 1.90562 1.25304 1.65130 1.71073 1.21480 1.12086 1.17826 1.08584 0.87795 1.27014 0.93977 0.99392 0.98335 1.70197 1.16804 1.38239 1.20291 0.85108 0.78844 0.77543 0.77096 1.20921 1.17323 1.17527 1.22193 0.86168 0.99866 0.94112 1.22581 1.02097 0.86440 0.91887 0.92723 0.90063 0.92027 0.89423 0.90073 0.92574 0.94947 0.80003 0.78220 0.82988 0.81958 0.91916 0.89168 0.91867 0.92530 0.91774 0.91249 0.87505 0.90401 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.18 71.98 0.66 -1.39 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.24 16 3 C -0.13 -2.92 9.17 71.98 0.66 -2.26 16 4 C 0.21 5.15 6.39 138.13 0.88 6.03 16 5 N -0.52 -14.38 11.25 -188.13 -2.12 -16.49 16 6 C -0.05 -1.27 11.87 83.52 0.99 -0.28 16 7 C -0.05 -0.98 11.58 83.09 0.96 -0.01 16 8 N -0.45 -9.01 2.24 -518.35 -1.16 -10.17 16 9 C 0.08 1.17 4.51 85.63 0.39 1.55 16 10 C 0.50 11.49 7.77 87.66 0.68 12.17 16 11 O -0.57 -18.76 15.82 -3.04 -0.05 -18.81 16 12 N -0.60 -14.16 2.95 -817.22 -2.41 -16.57 16 13 C 0.11 3.50 6.59 86.41 0.57 4.07 16 14 C 0.11 4.14 6.60 86.41 0.57 4.71 16 15 N -0.65 -25.99 2.94 -822.32 -2.42 -28.41 16 16 C 0.54 28.99 7.62 86.36 0.66 29.65 16 17 O -0.63 -40.73 14.45 -4.30 -0.06 -40.79 16 18 C -0.56 -28.63 8.87 24.83 0.22 -28.41 16 19 H 0.10 4.42 5.66 -2.91 -0.02 4.41 16 20 C 0.03 1.44 5.50 85.31 0.47 1.91 16 21 N -0.83 -48.53 11.84 21.84 0.26 -48.27 16 22 Si 0.99 37.42 29.56 68.60 2.03 39.45 16 23 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 25 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 26 C 0.10 2.71 6.51 86.55 0.56 3.27 16 27 C 0.09 1.72 6.52 86.55 0.56 2.28 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.48 6.85 -2.39 -0.02 1.47 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.15 1.20 6.88 -2.39 -0.02 1.19 16 38 H 0.16 1.00 7.90 -2.39 -0.02 0.98 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.83 6.99 -2.39 -0.02 2.81 16 41 H 0.06 2.77 6.99 -2.39 -0.02 2.76 16 42 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.27 14.66 8.29 -92.71 -0.77 13.89 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.11 2.94 5.34 -2.39 -0.01 2.92 16 46 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.14 1.04 5.91 -2.39 -0.01 1.03 16 Total: -1.00 -86.23 382.65 3.85 -82.38 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.98 Total: 24.63 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 8.80 Total: 33.05 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -7.85 Total: -119.92 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -0.11 Total: -59.61 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -86.23 3.85 -82.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602123044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.088 kcal (2) G-P(sol) polarization free energy of solvation -86.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds