Wall clock time and date at job start Tue Mar 31 2020 19:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 H 1.08997 * 109.46986 * 177.58878 * 3 2 1 5 5 C 1.50705 * 109.46676 * 57.59346 * 3 2 1 6 6 H 1.08001 * 119.99703 * 239.99275 * 5 3 2 7 7 C 1.37874 * 120.00186 * 60.00038 * 5 3 2 8 8 N 1.31513 * 120.00221 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99873 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47319 * 89.99801 * 9 7 5 11 11 H 1.48498 * 109.46926 * 209.99530 * 9 7 5 12 12 H 1.48498 * 109.47287 * 329.99614 * 9 7 5 13 13 N 1.46890 * 109.47571 * 297.59219 * 3 2 1 14 14 C 1.46907 * 110.99901 * 274.29917 * 13 3 2 15 15 C 1.53115 * 109.52174 * 274.51985 * 14 13 3 16 16 C 1.53040 * 109.27584 * 182.50385 * 15 14 13 17 17 N 1.46851 * 109.57327 * 59.08329 * 16 15 14 18 18 C 1.39705 * 110.99812 * 174.19362 * 17 16 15 19 19 C 1.39319 * 120.49548 * 304.21421 * 18 17 16 20 20 C 1.38486 * 118.36029 * 179.97438 * 19 18 17 21 21 C 1.38270 * 119.24341 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.54072 * 179.97438 * 21 20 19 23 23 O 1.21805 * 119.99509 * 0.02562 * 22 21 20 24 24 O 1.21794 * 120.00701 * 180.02562 * 22 21 20 25 25 N 1.31859 * 120.93077 * 0.02562 * 21 20 19 26 26 C 1.31816 * 121.79211 * 359.68179 * 25 21 20 27 27 C 1.46836 * 111.20261 * 298.29069 * 17 16 15 28 28 C 1.53045 * 109.52146 * 61.73977 * 27 17 16 29 29 H 1.09006 * 109.46465 * 294.51618 * 1 2 3 30 30 H 1.08996 * 109.47262 * 54.51049 * 1 2 3 31 31 H 1.09001 * 109.47170 * 174.51777 * 1 2 3 32 32 H 1.09000 * 109.46736 * 240.01008 * 2 1 3 33 33 H 1.08998 * 109.47689 * 120.00436 * 2 1 3 34 34 H 0.97002 * 120.00171 * 180.02562 * 8 7 5 35 35 H 1.00899 * 111.00111 * 150.34503 * 13 3 2 36 36 H 1.08994 * 109.51983 * 34.65062 * 14 13 3 37 37 H 1.09004 * 109.50432 * 302.38123 * 15 14 13 38 38 H 1.09001 * 109.49979 * 62.50076 * 15 14 13 39 39 H 1.09002 * 109.41368 * 299.07128 * 16 15 14 40 40 H 1.09001 * 109.45842 * 179.12663 * 16 15 14 41 41 H 1.07997 * 120.81618 * 359.97438 * 19 18 17 42 42 H 1.08005 * 120.37957 * 180.02562 * 20 19 18 43 43 H 1.08001 * 119.67104 * 180.31419 * 26 25 21 44 44 H 1.09004 * 109.46536 * 301.72914 * 27 17 16 45 45 H 1.08998 * 109.46636 * 181.75755 * 27 17 16 46 46 H 1.09001 * 109.50319 * 180.88309 * 28 27 17 47 47 H 1.09000 * 109.49975 * 60.76825 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0432 5 6 1.4895 2.1699 1.1996 6 1 0.8732 3.0464 1.0637 7 6 1.7726 1.7165 2.4705 8 7 2.5226 0.6490 2.6360 9 14 1.0895 2.6177 3.9574 10 1 -0.2336 2.0474 4.3171 11 1 2.0230 2.4628 5.1019 12 1 0.9362 4.0591 3.6352 13 7 1.5985 2.1181 -1.2274 14 6 2.5358 1.8701 -2.3311 15 6 3.6765 2.8898 -2.2725 16 6 4.6155 2.6661 -3.4601 17 7 3.8660 2.8127 -4.7144 18 6 4.7193 2.7442 -5.8184 19 6 5.8069 3.6082 -5.9261 20 6 6.6243 3.5014 -7.0388 21 6 6.3375 2.5484 -7.9987 22 7 7.2064 2.4288 -9.1908 23 8 8.1667 3.1667 -9.3209 24 8 6.9613 1.5926 -10.0418 25 7 5.3001 1.7451 -7.8674 26 6 4.5000 1.8092 -6.8218 27 6 2.7958 1.8123 -4.8136 28 6 1.8016 2.0115 -3.6673 29 1 -0.3632 0.4265 0.9351 30 1 -0.3633 0.5966 -0.8367 31 1 -0.3633 -1.0230 -0.0982 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7215 0.3298 3.5302 35 1 1.4768 3.1075 -1.0717 36 1 2.9427 0.8627 -2.2439 37 1 3.2658 3.8984 -2.3195 38 1 4.2293 2.7643 -1.3415 39 1 5.0374 1.6625 -3.4044 40 1 5.4204 3.4005 -3.4299 41 1 6.0075 4.3432 -5.1606 42 1 7.4767 4.1544 -7.1552 43 1 3.6629 1.1310 -6.7467 44 1 3.2261 0.8127 -4.7515 45 1 2.2791 1.9265 -5.7665 46 1 1.0158 1.2589 -3.7322 47 1 1.3605 3.0058 -3.7368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602612742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:36 Heat of formation + Delta-G solvation = 44.714265 kcal Electronic energy + Delta-G solvation = -28624.341056 eV Core-core repulsion = 24617.544940 eV Total energy + Delta-G solvation = -4006.796116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.47180 -41.34029 -39.20385 -36.78079 -36.63998 -34.22419 -33.26502 -31.94147 -31.19087 -30.89390 -29.30682 -26.82509 -25.97188 -25.11022 -23.76268 -23.24186 -22.70128 -22.15497 -20.13625 -19.86377 -19.08604 -18.92357 -17.93889 -17.83148 -17.01456 -16.47248 -15.79737 -15.50541 -15.06695 -14.76970 -14.60916 -14.42354 -14.15393 -13.92709 -13.77890 -13.49780 -13.11271 -12.93177 -12.38046 -12.12061 -11.90107 -11.82975 -11.62174 -11.58045 -11.38169 -11.33366 -11.21140 -11.02143 -10.87434 -10.77337 -10.63877 -10.52373 -10.36046 -10.25973 -10.08243 -9.77587 -9.47857 -8.90294 -8.72786 -8.58149 -7.39193 -6.12839 -4.18385 -0.55829 0.36518 0.91588 0.94483 2.76969 3.07199 3.21442 3.29064 3.30850 3.61180 3.88598 4.01568 4.12475 4.29719 4.44514 4.65074 4.73961 4.81246 4.88481 4.95710 5.04019 5.12298 5.17878 5.20618 5.38257 5.42301 5.51924 5.69121 5.71122 5.86452 6.02881 6.07792 6.21185 6.36060 6.40880 6.44079 6.48570 6.59640 6.75024 6.76461 7.11532 7.18682 7.38572 7.50621 7.61894 7.68794 7.72247 8.13299 8.25378 8.52914 8.90350 9.47086 10.93059 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028162 B = 0.002104 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.018050 B =13303.756145 C =13753.689855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.086 3.914 15 C -0.147 4.147 16 C 0.061 3.939 17 N -0.474 5.474 18 C 0.127 3.873 19 C -0.105 4.105 20 C -0.064 4.064 21 C 0.124 3.876 22 N 0.035 4.965 23 O -0.165 6.165 24 O -0.129 6.129 25 N -0.404 5.404 26 C 0.066 3.934 27 C 0.041 3.959 28 C -0.104 4.104 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.333 0.667 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.184 0.816 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 4.555 -15.372 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.308 5.308 14 C -0.025 4.025 15 C -0.187 4.187 16 C -0.063 4.063 17 N -0.186 5.186 18 C 0.022 3.978 19 C -0.134 4.134 20 C -0.087 4.087 21 C -0.094 4.094 22 N 0.556 4.444 23 O -0.375 6.375 24 O -0.352 6.352 25 N -0.116 5.116 26 C -0.099 4.099 27 C -0.085 4.085 28 C -0.142 4.142 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.200 0.800 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.978 3.886 -15.338 16.315 hybrid contribution 1.031 0.913 1.416 1.975 sum 5.009 4.799 -13.922 15.554 Atomic orbital electron populations 1.21438 0.97454 0.97150 1.01612 1.21442 0.95169 0.98260 0.99176 1.19121 0.93277 0.91543 0.85066 0.98182 1.21159 1.31740 1.12019 0.90339 0.92349 1.24873 0.95024 0.94999 0.98875 1.69876 1.37415 1.23115 1.22289 0.86593 0.78892 0.80082 0.82411 1.20616 1.21336 1.19991 1.60741 1.46509 1.16137 1.07396 1.21592 0.90798 0.97792 0.92322 1.22463 0.98139 1.01583 0.96500 1.22374 0.96005 1.01398 0.86571 1.58843 1.10771 1.47653 1.01327 1.20506 0.90848 0.92198 0.94229 1.21345 0.93870 0.99741 0.98432 1.21619 1.00208 0.95794 0.91070 1.21319 0.96130 1.01385 0.90545 1.43342 1.00218 0.99479 1.01375 1.94543 1.18707 1.41024 1.83191 1.94574 1.76278 1.29090 1.35265 1.66296 1.01121 1.21485 1.22659 1.23096 0.99671 0.97742 0.89397 1.22560 0.92140 0.92417 1.01414 1.21625 0.96971 1.03394 0.92257 0.92920 0.93449 0.96884 0.97335 0.89728 0.92916 0.84941 0.91149 0.90824 0.90067 0.92834 0.89936 0.81971 0.81714 0.79953 0.92532 0.89515 0.89996 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.45 37.16 0.35 -2.14 16 2 C -0.10 -2.27 5.55 -26.73 -0.15 -2.42 16 3 C 0.22 4.79 2.11 -68.87 -0.15 4.65 16 4 H 0.00 0.01 7.17 -51.93 -0.37 -0.36 16 5 C -0.51 -12.68 7.32 -34.44 -0.25 -12.93 16 6 H 0.06 1.44 7.61 -52.49 -0.40 1.04 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -23.72 11.34 55.43 0.63 -23.10 16 9 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.68 -11.99 5.31 -100.83 -0.54 -12.52 16 14 C 0.09 1.19 2.33 -67.59 -0.16 1.04 16 15 C -0.15 -1.78 5.34 -26.65 -0.14 -1.92 16 16 C 0.06 0.57 5.26 -3.83 -0.02 0.55 16 17 N -0.47 -4.13 4.71 -171.01 -0.81 -4.94 16 18 C 0.13 1.06 5.65 -83.63 -0.47 0.59 16 19 C -0.11 -0.76 9.29 -39.09 -0.36 -1.13 16 20 C -0.06 -0.52 9.58 -39.48 -0.38 -0.90 16 21 C 0.12 1.39 7.77 -146.19 -1.14 0.26 16 22 N 0.03 0.45 4.45 32.88 0.15 0.60 16 23 O -0.17 -2.08 18.42 -29.46 -0.54 -2.62 16 24 O -0.13 -1.86 19.02 -29.46 -0.56 -2.42 16 25 N -0.40 -4.64 10.03 -10.12 -0.10 -4.75 16 26 C 0.07 0.60 10.00 -17.32 -0.17 0.42 16 27 C 0.04 0.35 4.15 -3.84 -0.02 0.33 16 28 C -0.10 -1.14 5.71 -26.65 -0.15 -1.29 16 29 H 0.05 1.20 7.36 -51.93 -0.38 0.82 16 30 H 0.05 0.94 7.52 -51.93 -0.39 0.55 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.01 0.17 7.46 -51.93 -0.39 -0.22 16 33 H 0.08 2.14 6.14 -51.93 -0.32 1.82 16 34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.33 5.89 7.92 -39.29 -0.31 5.57 16 36 H 0.07 1.09 7.16 -51.93 -0.37 0.71 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.08 1.14 7.51 -51.93 -0.39 0.75 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.63 6.77 -51.93 -0.35 0.28 16 41 H 0.16 0.82 7.23 -52.49 -0.38 0.44 16 42 H 0.17 0.99 7.60 -52.48 -0.40 0.59 16 43 H 0.18 1.26 5.83 -52.49 -0.31 0.96 16 44 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 45 H 0.09 0.60 7.02 -51.93 -0.36 0.24 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -28.00 375.96 -11.20 -39.20 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.77 Total: 3.15 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -3.30 Total: -13.35 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.67 Total: -44.70 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -1.10 Total: -5.04 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.00 -11.20 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602612742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.911 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds