Wall clock time and date at job start Tue Mar 31 2020 19:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 H 1.08997 * 109.46986 * 177.58878 * 3 2 1 5 5 C 1.50705 * 109.46676 * 57.59346 * 3 2 1 6 6 H 1.08001 * 119.99703 * 239.99275 * 5 3 2 7 7 C 1.37874 * 120.00186 * 60.00038 * 5 3 2 8 8 N 1.31513 * 120.00221 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99873 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47319 * 89.99801 * 9 7 5 11 11 H 1.48498 * 109.46926 * 209.99530 * 9 7 5 12 12 H 1.48498 * 109.47287 * 329.99614 * 9 7 5 13 13 N 1.46890 * 109.47571 * 297.59219 * 3 2 1 14 14 C 1.46907 * 110.99901 * 274.29917 * 13 3 2 15 15 C 1.53115 * 109.52174 * 274.51985 * 14 13 3 16 16 C 1.53040 * 109.27584 * 182.50385 * 15 14 13 17 17 N 1.46851 * 109.57327 * 59.08329 * 16 15 14 18 18 C 1.39705 * 110.99812 * 174.19362 * 17 16 15 19 19 C 1.39319 * 120.49548 * 304.21421 * 18 17 16 20 20 C 1.38486 * 118.36029 * 179.97438 * 19 18 17 21 21 C 1.38270 * 119.24341 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.54072 * 179.97438 * 21 20 19 23 23 O 1.21805 * 119.99509 * 0.02562 * 22 21 20 24 24 O 1.21794 * 120.00701 * 180.02562 * 22 21 20 25 25 N 1.31859 * 120.93077 * 0.02562 * 21 20 19 26 26 C 1.31816 * 121.79211 * 359.68179 * 25 21 20 27 27 C 1.46836 * 111.20261 * 298.29069 * 17 16 15 28 28 C 1.53045 * 109.52146 * 61.73977 * 27 17 16 29 29 H 1.09006 * 109.46465 * 294.51618 * 1 2 3 30 30 H 1.08996 * 109.47262 * 54.51049 * 1 2 3 31 31 H 1.09001 * 109.47170 * 174.51777 * 1 2 3 32 32 H 1.09000 * 109.46736 * 240.01008 * 2 1 3 33 33 H 1.08998 * 109.47689 * 120.00436 * 2 1 3 34 34 H 0.97002 * 120.00171 * 180.02562 * 8 7 5 35 35 H 1.00899 * 111.00111 * 150.34503 * 13 3 2 36 36 H 1.08994 * 109.51983 * 34.65062 * 14 13 3 37 37 H 1.09004 * 109.50432 * 302.38123 * 15 14 13 38 38 H 1.09001 * 109.49979 * 62.50076 * 15 14 13 39 39 H 1.09002 * 109.41368 * 299.07128 * 16 15 14 40 40 H 1.09001 * 109.45842 * 179.12663 * 16 15 14 41 41 H 1.07997 * 120.81618 * 359.97438 * 19 18 17 42 42 H 1.08005 * 120.37957 * 180.02562 * 20 19 18 43 43 H 1.08001 * 119.67104 * 180.31419 * 26 25 21 44 44 H 1.09004 * 109.46536 * 301.72914 * 27 17 16 45 45 H 1.08998 * 109.46636 * 181.75755 * 27 17 16 46 46 H 1.09001 * 109.50319 * 180.88309 * 28 27 17 47 47 H 1.09000 * 109.49975 * 60.76825 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0432 5 6 1.4895 2.1699 1.1996 6 1 0.8732 3.0464 1.0637 7 6 1.7726 1.7165 2.4705 8 7 2.5226 0.6490 2.6360 9 14 1.0895 2.6177 3.9574 10 1 -0.2336 2.0474 4.3171 11 1 2.0230 2.4628 5.1019 12 1 0.9362 4.0591 3.6352 13 7 1.5985 2.1181 -1.2274 14 6 2.5358 1.8701 -2.3311 15 6 3.6765 2.8898 -2.2725 16 6 4.6155 2.6661 -3.4601 17 7 3.8660 2.8127 -4.7144 18 6 4.7193 2.7442 -5.8184 19 6 5.8069 3.6082 -5.9261 20 6 6.6243 3.5014 -7.0388 21 6 6.3375 2.5484 -7.9987 22 7 7.2064 2.4288 -9.1908 23 8 8.1667 3.1667 -9.3209 24 8 6.9613 1.5926 -10.0418 25 7 5.3001 1.7451 -7.8674 26 6 4.5000 1.8092 -6.8218 27 6 2.7958 1.8123 -4.8136 28 6 1.8016 2.0115 -3.6673 29 1 -0.3632 0.4265 0.9351 30 1 -0.3633 0.5966 -0.8367 31 1 -0.3633 -1.0230 -0.0982 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.7215 0.3298 3.5302 35 1 1.4768 3.1075 -1.0717 36 1 2.9427 0.8627 -2.2439 37 1 3.2658 3.8984 -2.3195 38 1 4.2293 2.7643 -1.3415 39 1 5.0374 1.6625 -3.4044 40 1 5.4204 3.4005 -3.4299 41 1 6.0075 4.3432 -5.1606 42 1 7.4767 4.1544 -7.1552 43 1 3.6629 1.1310 -6.7467 44 1 3.2261 0.8127 -4.7515 45 1 2.2791 1.9265 -5.7665 46 1 1.0158 1.2589 -3.7322 47 1 1.3605 3.0058 -3.7368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602612742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:35 Heat of formation + Delta-G solvation = 29.008248 kcal Electronic energy + Delta-G solvation = -28625.022120 eV Core-core repulsion = 24617.544940 eV Total energy + Delta-G solvation = -4007.477180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.35593 -42.09916 -40.09715 -38.01300 -37.72184 -35.55839 -34.02183 -33.44806 -32.18797 -32.00340 -30.52784 -28.16091 -27.21599 -25.94431 -25.16743 -24.50325 -23.52575 -23.04413 -21.22284 -20.71065 -20.68545 -19.84516 -18.75580 -18.70213 -18.25325 -17.68369 -16.89921 -16.46301 -16.31532 -15.74950 -15.69118 -15.45686 -15.18965 -15.05146 -14.68466 -14.61941 -14.29958 -14.09473 -13.83805 -13.47001 -13.20451 -12.97222 -12.82187 -12.79552 -12.51160 -12.48366 -12.33702 -12.29079 -12.24617 -12.13935 -11.90567 -11.70598 -11.53562 -11.37125 -11.27353 -11.12386 -10.97320 -10.75101 -10.51311 -9.42823 -8.88289 -8.08303 -6.18857 -1.39489 -0.25677 0.09110 0.11769 1.41379 1.44492 1.51669 2.05836 2.37351 2.43243 2.93526 3.20517 3.21591 3.40348 3.45531 3.55305 3.78192 3.88183 4.08753 4.13854 4.23110 4.27683 4.30853 4.50507 4.54507 4.59925 4.63255 4.73593 4.77713 4.79693 4.83483 4.92248 4.98913 5.05668 5.18603 5.28696 5.32211 5.37781 5.47616 5.58953 5.64843 5.71748 5.74493 5.85538 5.94858 6.01101 6.31472 6.56258 6.58284 6.87292 7.09962 7.50259 8.96384 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028162 B = 0.002104 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.018050 B =13303.756145 C =13753.689855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.030 1.030 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.676 5.676 14 C 0.084 3.916 15 C -0.139 4.139 16 C 0.067 3.933 17 N -0.471 5.471 18 C 0.130 3.870 19 C -0.094 4.094 20 C -0.051 4.051 21 C 0.100 3.900 22 N 0.035 4.965 23 O -0.147 6.147 24 O -0.188 6.188 25 N -0.435 5.435 26 C 0.069 3.931 27 C 0.042 3.958 28 C -0.094 4.094 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.021 0.979 33 H 0.052 0.948 34 H 0.259 0.741 35 H 0.333 0.667 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.193 0.807 42 H 0.189 0.811 43 H 0.200 0.800 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 6.165 -15.806 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.118 3.882 4 H -0.013 1.013 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.774 3.226 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.306 5.306 14 C -0.027 4.027 15 C -0.179 4.179 16 C -0.058 4.058 17 N -0.183 5.183 18 C 0.026 3.974 19 C -0.122 4.122 20 C -0.073 4.073 21 C -0.116 4.116 22 N 0.551 4.449 23 O -0.364 6.364 24 O -0.397 6.397 25 N -0.147 5.147 26 C -0.097 4.097 27 C -0.084 4.084 28 C -0.132 4.132 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.210 0.790 42 H 0.206 0.794 43 H 0.217 0.783 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.668 5.424 -15.859 17.157 hybrid contribution 1.117 0.485 1.624 2.030 sum 4.785 5.909 -14.234 16.138 Atomic orbital electron populations 1.21305 0.96217 0.98296 1.00657 1.21322 0.96145 0.98110 0.98146 1.18829 0.91198 0.91771 0.86362 1.01283 1.21467 1.31030 1.11837 0.91375 0.92556 1.25549 0.95493 0.95696 1.01345 1.70009 1.38723 1.24396 1.22462 0.85726 0.78005 0.79360 0.79542 1.20653 1.21513 1.19215 1.60648 1.47720 1.15774 1.06410 1.21676 0.91215 0.97403 0.92405 1.22266 0.97754 1.00970 0.96864 1.22298 0.95738 1.02178 0.85560 1.58801 1.10716 1.47673 1.01104 1.20538 0.91036 0.92198 0.93670 1.21678 0.92699 0.99474 0.98390 1.21898 1.00703 0.94720 0.90028 1.21480 0.96611 1.03053 0.90479 1.43693 1.00321 0.98977 1.01869 1.94493 1.18671 1.40134 1.83123 1.94575 1.77436 1.30738 1.36981 1.66200 1.01998 1.22576 1.23957 1.23393 0.99573 0.98008 0.88749 1.22581 0.91779 0.92814 1.01261 1.21481 0.97207 1.03347 0.91152 0.95327 0.92360 0.95085 0.96081 0.92979 0.93229 0.84938 0.92922 0.90487 0.92647 0.92989 0.87500 0.79038 0.79386 0.78305 0.91826 0.87241 0.90238 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.45 71.98 0.68 -3.75 16 2 C -0.10 -4.42 5.55 30.60 0.17 -4.25 16 3 C 0.23 10.14 2.11 44.17 0.09 10.23 16 4 H -0.03 -1.52 7.17 -2.39 -0.02 -1.54 16 5 C -0.52 -25.78 7.32 25.60 0.19 -25.59 16 6 H 0.06 2.77 7.61 -2.91 -0.02 2.75 16 7 C 0.02 0.95 5.30 84.65 0.45 1.40 16 8 N -0.92 -50.02 11.34 21.45 0.24 -49.77 16 9 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 13 N -0.68 -23.56 5.31 -472.91 -2.51 -26.07 16 14 C 0.08 2.23 2.33 44.99 0.10 2.33 16 15 C -0.14 -3.17 5.34 30.65 0.16 -3.01 16 16 C 0.07 1.05 5.26 86.33 0.45 1.50 16 17 N -0.47 -6.55 4.71 -694.96 -3.27 -9.82 16 18 C 0.13 1.72 5.65 38.30 0.22 1.93 16 19 C -0.09 -0.98 9.29 22.59 0.21 -0.77 16 20 C -0.05 -0.67 9.58 22.34 0.21 -0.45 16 21 C 0.10 2.11 7.77 129.66 1.01 3.12 16 22 N 0.04 0.91 4.45 -49.89 -0.22 0.69 16 23 O -0.15 -3.54 18.42 18.88 0.35 -3.19 16 24 O -0.19 -5.65 19.02 18.89 0.36 -5.29 16 25 N -0.43 -9.48 10.03 -185.94 -1.87 -11.35 16 26 C 0.07 1.06 10.00 84.85 0.85 1.91 16 27 C 0.04 0.58 4.15 86.33 0.36 0.94 16 28 C -0.09 -1.83 5.71 30.65 0.17 -1.66 16 29 H 0.03 1.28 7.36 -2.38 -0.02 1.27 16 30 H 0.06 2.24 7.52 -2.39 -0.02 2.23 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.02 0.86 7.46 -2.39 -0.02 0.84 16 33 H 0.05 2.69 6.14 -2.39 -0.01 2.68 16 34 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.33 11.56 7.92 -89.69 -0.71 10.84 16 36 H 0.05 1.60 7.16 -2.39 -0.02 1.58 16 37 H 0.08 1.71 8.10 -2.38 -0.02 1.69 16 38 H 0.05 1.56 7.51 -2.39 -0.02 1.54 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 1.20 6.77 -2.39 -0.02 1.18 16 41 H 0.19 0.89 7.23 -2.91 -0.02 0.87 16 42 H 0.19 1.54 7.60 -2.91 -0.02 1.51 16 43 H 0.20 2.19 5.83 -2.91 -0.02 2.17 16 44 H 0.06 0.84 7.74 -2.38 -0.02 0.82 16 45 H 0.11 1.10 7.02 -2.39 -0.02 1.08 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.86 375.96 0.73 -62.13 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.29 Total: 15.38 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.33 Total: -16.10 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -7.63 Total: -96.33 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.71 Total: -8.48 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -62.86 0.73 -62.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602612742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.139 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds