Wall clock time and date at job start Tue Mar 31 2020 19:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99920 * 2 1 4 4 C 1.53005 * 109.46732 * 125.00166 * 3 2 1 5 5 H 1.08996 * 109.46933 * 55.00342 * 4 3 2 6 6 C 1.53006 * 109.46991 * 174.99929 * 4 3 2 7 7 C 1.52997 * 109.47127 * 184.99870 * 6 4 3 8 8 N 1.46490 * 109.47280 * 294.99936 * 4 3 2 9 9 C 1.34777 * 120.00429 * 155.00115 * 8 4 3 10 10 O 1.21367 * 119.99671 * 0.02562 * 9 8 4 11 11 C 1.49299 * 120.00496 * 180.02562 * 9 8 4 12 12 O 1.21398 * 120.00067 * 0.02562 * 11 9 8 13 13 N 1.34782 * 120.00124 * 179.97438 * 11 9 8 14 14 C 1.39200 * 120.00069 * 180.02562 * 13 11 9 15 15 C 1.36223 * 126.26881 * 359.69069 * 14 13 11 16 16 C 1.39695 * 107.85135 * 179.84953 * 15 14 13 17 17 C 1.50703 * 125.76781 * 180.16917 * 16 15 14 18 18 N 1.30846 * 108.46605 * 0.42006 * 16 15 14 19 19 N 1.35846 * 126.27400 * 180.02562 * 14 13 11 20 20 C 1.46506 * 126.09595 * 359.97438 * 19 14 13 21 21 C 1.50698 * 109.46958 * 90.00261 * 20 19 14 22 22 H 1.08005 * 120.00344 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00272 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00110 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99427 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47241 * 90.00071 * 25 23 21 27 27 H 1.48504 * 109.46646 * 209.99487 * 25 23 21 28 28 H 1.48496 * 109.47110 * 329.99434 * 25 23 21 29 29 H 1.07999 * 120.00243 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00542 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00482 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47308 * 5.00329 * 3 2 1 33 33 H 1.08999 * 109.47226 * 245.00293 * 3 2 1 34 34 H 1.08998 * 109.46505 * 64.99741 * 6 4 3 35 35 H 1.08996 * 109.46884 * 305.00622 * 6 4 3 36 36 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46832 * 60.00321 * 7 6 4 38 38 H 1.09004 * 109.47261 * 300.00303 * 7 6 4 39 39 H 0.97001 * 120.00176 * 335.00323 * 8 4 3 40 40 H 0.96992 * 119.99815 * 0.02562 * 13 11 9 41 41 H 1.07987 * 126.07240 * 0.02562 * 15 14 13 42 42 H 1.09003 * 109.46659 * 270.27526 * 17 16 15 43 43 H 1.08997 * 109.47274 * 30.26899 * 17 16 15 44 44 H 1.08995 * 109.47630 * 150.27005 * 17 16 15 45 45 H 1.09005 * 109.47194 * 210.00234 * 20 19 14 46 46 H 1.08995 * 109.47041 * 330.00198 * 20 19 14 47 47 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6826 0.4573 1.1403 6 6 3.8876 2.6016 1.1111 7 6 4.9419 2.5697 2.2193 8 7 2.2786 1.3222 2.4361 9 6 2.8473 0.8473 3.5620 10 8 3.9864 0.4291 3.5366 11 6 2.0762 0.8358 4.8404 12 8 0.9367 1.2537 4.8658 13 7 2.6449 0.3604 5.9661 14 6 1.9258 0.3491 7.1579 15 6 0.6488 0.7902 7.3329 16 6 0.3088 0.5964 8.6739 17 6 -1.0152 0.9415 9.3056 18 7 1.3359 0.0696 9.2899 19 7 2.3709 -0.0979 8.3610 20 6 3.6968 -0.6563 8.6375 21 6 4.6358 0.4528 9.0364 22 1 4.2804 1.4718 9.0800 23 6 5.9484 0.1668 9.3467 24 7 6.7679 1.1348 9.6942 25 14 6.5629 -1.5957 9.2719 26 1 7.0824 -1.8815 7.9105 27 1 7.6501 -1.7833 10.2660 28 1 5.4449 -2.5232 9.5800 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.2496 3.4757 1.2415 35 1 4.3815 2.6538 0.1409 36 1 5.5490 3.4736 2.1693 37 1 5.5798 1.6955 2.0888 38 1 4.4479 2.5175 3.1895 39 1 1.3683 1.6568 2.4566 40 1 3.5552 0.0261 5.9458 41 1 0.0116 1.2118 6.5698 42 1 -0.9840 1.9653 9.6785 43 1 -1.8073 0.8496 8.5625 44 1 -1.2121 0.2594 10.1326 45 1 3.6241 -1.3803 9.4492 46 1 4.0768 -1.1501 7.7432 47 1 7.6915 0.9336 9.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619646434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:05 Heat of formation + Delta-G solvation = 25.087321 kcal Electronic energy + Delta-G solvation = -29015.139979 eV Core-core repulsion = 25007.492775 eV Total energy + Delta-G solvation = -4007.647204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26585 -40.37444 -38.77317 -37.12426 -35.04829 -34.09171 -33.77041 -32.51992 -32.16088 -29.61473 -29.15854 -28.58159 -26.35236 -25.34332 -23.92392 -22.52987 -21.52379 -20.86496 -20.17117 -19.93325 -19.54387 -17.94659 -17.18459 -17.13188 -16.50646 -16.29152 -15.99340 -15.23318 -15.06637 -14.67982 -14.47851 -14.14764 -14.01944 -13.86532 -13.73991 -13.26083 -13.18859 -12.77973 -12.74775 -12.62648 -12.41046 -12.34454 -11.96194 -11.90089 -11.73415 -11.53694 -11.37482 -11.15431 -11.12265 -10.97681 -10.80381 -10.60818 -10.24684 -9.91514 -9.75123 -9.72319 -9.54048 -9.30894 -8.83102 -8.02417 -7.62019 -6.30824 -4.35600 1.22921 1.95063 2.08451 2.56909 3.10998 3.15951 3.19600 3.20542 3.25312 3.51273 3.73285 4.17819 4.26640 4.36444 4.54052 4.74075 4.90765 4.94719 4.97717 5.13222 5.23256 5.25618 5.37265 5.48859 5.54258 5.57605 5.74126 5.86441 5.94966 5.97194 5.97891 5.99266 6.09761 6.13764 6.19572 6.29107 6.32546 6.35110 6.41666 6.49592 6.68856 6.97123 7.21158 7.32719 7.39783 7.50997 7.78698 7.98441 8.25112 8.48075 8.74023 9.23645 10.81356 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003621 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.767392 B = 7730.819679 C = 9648.942378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.096 0.904 6 C -0.135 4.135 7 C -0.150 4.150 8 N -0.692 5.692 9 C 0.516 3.484 10 O -0.504 6.504 11 C 0.511 3.489 12 O -0.497 6.497 13 N -0.609 5.609 14 C 0.297 3.703 15 C -0.285 4.285 16 C 0.054 3.946 17 C -0.063 4.063 18 N -0.275 5.275 19 N -0.341 5.341 20 C 0.229 3.771 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.082 3.918 24 N -0.882 5.882 25 Si 0.870 3.130 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.412 0.588 40 H 0.427 0.573 41 H 0.164 0.836 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -0.190 -20.091 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.175 4.175 3 C -0.139 4.139 4 C 0.043 3.957 5 H 0.114 0.886 6 C -0.173 4.173 7 C -0.207 4.207 8 N -0.346 5.346 9 C 0.296 3.704 10 O -0.379 6.379 11 C 0.292 3.708 12 O -0.370 6.370 13 N -0.257 5.257 14 C 0.076 3.924 15 C -0.316 4.316 16 C -0.111 4.111 17 C -0.122 4.122 18 N -0.100 5.100 19 N -0.126 5.126 20 C 0.110 3.890 21 C -0.585 4.585 22 H 0.100 0.900 23 C -0.123 4.123 24 N -0.518 5.518 25 Si 0.696 3.304 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.248 0.752 40 H 0.265 0.735 41 H 0.182 0.818 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.025 -0.642 -18.954 21.451 hybrid contribution 0.510 -0.549 -0.668 1.004 sum -9.515 -1.191 -19.622 21.840 Atomic orbital electron populations 1.23879 0.95886 1.02049 1.00697 1.22904 0.96114 0.98253 1.00241 1.21090 0.98497 0.96270 0.98068 1.21175 0.92861 0.99941 0.81734 0.88644 1.21999 0.97957 0.97184 1.00201 1.21837 0.98554 1.01702 0.98617 1.45715 1.18485 1.62675 1.07707 1.19693 0.86676 0.79308 0.84687 1.90834 1.16980 1.44779 1.85284 1.19994 0.86944 0.79352 0.84499 1.90698 1.17253 1.44025 1.85019 1.42300 1.18323 1.59636 1.05399 1.17962 0.91879 1.01471 0.81125 1.21290 0.95493 1.16910 0.97928 1.22045 0.95958 1.00165 0.92940 1.20046 0.90431 1.01647 1.00060 1.77374 0.95525 1.23657 1.13465 1.49121 1.12861 1.47846 1.02768 1.19997 0.75425 0.95823 0.97800 1.21163 0.93939 0.94683 1.48762 0.90031 1.24804 0.96187 0.97410 0.93912 1.69863 1.05716 1.32055 1.44190 0.86933 0.79610 0.84915 0.78936 1.19456 1.20327 1.18751 0.88451 0.88470 0.87272 0.90569 0.89007 0.91565 0.90760 0.93144 0.91873 0.92513 0.75190 0.73455 0.81831 0.91067 0.91006 0.91416 0.92560 0.94571 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 14.32 29.02 0.42 -0.85 16 2 C -0.16 -1.08 9.25 -36.02 -0.33 -1.42 16 3 C -0.10 -0.60 5.20 -27.88 -0.15 -0.74 16 4 C 0.15 1.21 2.24 -67.93 -0.15 1.06 16 5 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 6 C -0.13 -1.11 5.61 -26.73 -0.15 -1.26 16 7 C -0.15 -1.70 8.51 37.16 0.32 -1.38 16 8 N -0.69 -6.98 4.74 -54.29 -0.26 -7.24 16 9 C 0.52 7.03 6.45 -11.66 -0.08 6.96 16 10 O -0.50 -7.85 13.61 5.48 0.07 -7.77 16 11 C 0.51 8.14 7.85 -11.65 -0.09 8.05 16 12 O -0.50 -8.17 13.60 5.45 0.07 -8.10 16 13 N -0.61 -11.07 5.40 -11.80 -0.06 -11.14 16 14 C 0.30 6.19 7.68 -152.86 -1.17 5.02 16 15 C -0.28 -5.58 9.58 -39.76 -0.38 -5.96 16 16 C 0.05 1.05 7.20 -82.47 -0.59 0.45 16 17 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 18 N -0.28 -6.24 12.56 33.64 0.42 -5.82 16 19 N -0.34 -7.86 3.62 -61.47 -0.22 -8.08 16 20 C 0.23 5.47 5.09 -5.19 -0.03 5.45 16 21 C -0.55 -15.27 9.94 -34.44 -0.34 -15.61 16 22 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 23 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 24 N -0.88 -26.13 13.96 55.43 0.77 -25.35 16 25 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 29 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.10 0.57 7.84 -52.48 -0.41 0.16 16 31 H 0.11 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.08 0.39 7.79 -51.93 -0.40 -0.01 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 38 H 0.06 0.78 5.64 -51.93 -0.29 0.48 16 39 H 0.41 3.71 8.07 -40.82 -0.33 3.38 16 40 H 0.43 7.70 7.46 -40.82 -0.30 7.40 16 41 H 0.16 3.01 5.83 -52.49 -0.31 2.70 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.36 7.20 -51.93 -0.37 0.98 16 46 H 0.04 0.80 6.95 -51.93 -0.36 0.44 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -32.57 392.23 -7.39 -39.96 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.98 Total: 10.78 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.45 Total: 1.43 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.65 Total: -57.63 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.15 Total: -15.87 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.57 -7.39 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619646434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.045 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds