Wall clock time and date at job start Tue Mar 31 2020 19:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99920 * 2 1 4 4 C 1.53005 * 109.46732 * 125.00166 * 3 2 1 5 5 H 1.08996 * 109.46933 * 55.00342 * 4 3 2 6 6 C 1.53006 * 109.46991 * 174.99929 * 4 3 2 7 7 C 1.52997 * 109.47127 * 184.99870 * 6 4 3 8 8 N 1.46490 * 109.47280 * 294.99936 * 4 3 2 9 9 C 1.34777 * 120.00429 * 155.00115 * 8 4 3 10 10 O 1.21367 * 119.99671 * 0.02562 * 9 8 4 11 11 C 1.49299 * 120.00496 * 180.02562 * 9 8 4 12 12 O 1.21398 * 120.00067 * 0.02562 * 11 9 8 13 13 N 1.34782 * 120.00124 * 179.97438 * 11 9 8 14 14 C 1.39200 * 120.00069 * 180.02562 * 13 11 9 15 15 C 1.36223 * 126.26881 * 359.69069 * 14 13 11 16 16 C 1.39695 * 107.85135 * 179.84953 * 15 14 13 17 17 C 1.50703 * 125.76781 * 180.16917 * 16 15 14 18 18 N 1.30846 * 108.46605 * 0.42006 * 16 15 14 19 19 N 1.35846 * 126.27400 * 180.02562 * 14 13 11 20 20 C 1.46506 * 126.09595 * 359.97438 * 19 14 13 21 21 C 1.50698 * 109.46958 * 90.00261 * 20 19 14 22 22 H 1.08005 * 120.00344 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00272 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00110 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99427 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47241 * 90.00071 * 25 23 21 27 27 H 1.48504 * 109.46646 * 209.99487 * 25 23 21 28 28 H 1.48496 * 109.47110 * 329.99434 * 25 23 21 29 29 H 1.07999 * 120.00243 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00542 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00482 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47308 * 5.00329 * 3 2 1 33 33 H 1.08999 * 109.47226 * 245.00293 * 3 2 1 34 34 H 1.08998 * 109.46505 * 64.99741 * 6 4 3 35 35 H 1.08996 * 109.46884 * 305.00622 * 6 4 3 36 36 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46832 * 60.00321 * 7 6 4 38 38 H 1.09004 * 109.47261 * 300.00303 * 7 6 4 39 39 H 0.97001 * 120.00176 * 335.00323 * 8 4 3 40 40 H 0.96992 * 119.99815 * 0.02562 * 13 11 9 41 41 H 1.07987 * 126.07240 * 0.02562 * 15 14 13 42 42 H 1.09003 * 109.46659 * 270.27526 * 17 16 15 43 43 H 1.08997 * 109.47274 * 30.26899 * 17 16 15 44 44 H 1.08995 * 109.47630 * 150.27005 * 17 16 15 45 45 H 1.09005 * 109.47194 * 210.00234 * 20 19 14 46 46 H 1.08995 * 109.47041 * 330.00198 * 20 19 14 47 47 H 0.97002 * 119.99982 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6826 0.4573 1.1403 6 6 3.8876 2.6016 1.1111 7 6 4.9419 2.5697 2.2193 8 7 2.2786 1.3222 2.4361 9 6 2.8473 0.8473 3.5620 10 8 3.9864 0.4291 3.5366 11 6 2.0762 0.8358 4.8404 12 8 0.9367 1.2537 4.8658 13 7 2.6449 0.3604 5.9661 14 6 1.9258 0.3491 7.1579 15 6 0.6488 0.7902 7.3329 16 6 0.3088 0.5964 8.6739 17 6 -1.0152 0.9415 9.3056 18 7 1.3359 0.0696 9.2899 19 7 2.3709 -0.0979 8.3610 20 6 3.6968 -0.6563 8.6375 21 6 4.6358 0.4528 9.0364 22 1 4.2804 1.4718 9.0800 23 6 5.9484 0.1668 9.3467 24 7 6.7679 1.1348 9.6942 25 14 6.5629 -1.5957 9.2719 26 1 7.0824 -1.8815 7.9105 27 1 7.6501 -1.7833 10.2660 28 1 5.4449 -2.5232 9.5800 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.2496 3.4757 1.2415 35 1 4.3815 2.6538 0.1409 36 1 5.5490 3.4736 2.1693 37 1 5.5798 1.6955 2.0888 38 1 4.4479 2.5175 3.1895 39 1 1.3683 1.6568 2.4566 40 1 3.5552 0.0261 5.9458 41 1 0.0116 1.2118 6.5698 42 1 -0.9840 1.9653 9.6785 43 1 -1.8073 0.8496 8.5625 44 1 -1.2121 0.2594 10.1326 45 1 3.6241 -1.3803 9.4492 46 1 4.0768 -1.1501 7.7432 47 1 7.6915 0.9336 9.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619646434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:04 Heat of formation + Delta-G solvation = 2.910454 kcal Electronic energy + Delta-G solvation = -29016.101640 eV Core-core repulsion = 25007.492775 eV Total energy + Delta-G solvation = -4008.608865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.67916 -41.65315 -39.99211 -37.99772 -36.46283 -35.69520 -34.70765 -34.02957 -33.40427 -31.21367 -30.24756 -29.74626 -28.04172 -26.50614 -24.73379 -24.33998 -22.75693 -21.72205 -21.48119 -21.04052 -20.52288 -19.31771 -19.23697 -18.31093 -17.95561 -17.45038 -17.07840 -16.60927 -16.25533 -16.01068 -15.77067 -15.48110 -15.23688 -14.94234 -14.60596 -14.50210 -14.43268 -14.21176 -14.16708 -13.80840 -13.56933 -13.42278 -13.17757 -13.07997 -13.00094 -12.77943 -12.57934 -12.46528 -12.22365 -12.01598 -11.93053 -11.85377 -11.77945 -11.70582 -11.44188 -10.94789 -10.82810 -10.34851 -10.09644 -9.69166 -9.21029 -8.45825 -6.58197 -0.03374 0.80118 1.07327 1.31225 1.32758 1.42865 1.43915 1.76614 1.80689 2.11579 2.21703 2.41949 2.85743 3.20586 3.68234 3.72220 3.93841 4.08962 4.14758 4.27526 4.36109 4.39390 4.46178 4.51048 4.59025 4.62355 4.68413 4.77871 4.87248 4.89602 4.90378 4.99413 5.06394 5.07739 5.11496 5.14978 5.17494 5.17765 5.33160 5.45194 5.76390 5.80254 5.82393 5.90387 5.90600 6.08070 6.24451 6.44383 6.53711 6.80873 6.88731 7.06442 8.70602 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003621 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.767392 B = 7730.819679 C = 9648.942378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C -0.092 4.092 4 C 0.145 3.855 5 H 0.084 0.916 6 C -0.129 4.129 7 C -0.151 4.151 8 N -0.672 5.672 9 C 0.521 3.479 10 O -0.527 6.527 11 C 0.512 3.488 12 O -0.499 6.499 13 N -0.616 5.616 14 C 0.291 3.709 15 C -0.290 4.290 16 C 0.062 3.938 17 C -0.062 4.062 18 N -0.319 5.319 19 N -0.367 5.367 20 C 0.239 3.761 21 C -0.555 4.555 22 H 0.025 0.975 23 C 0.025 3.975 24 N -0.932 5.932 25 Si 0.947 3.053 26 H -0.253 1.253 27 H -0.274 1.274 28 H -0.244 1.244 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.419 0.581 40 H 0.425 0.575 41 H 0.178 0.822 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 -0.998 -22.375 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.129 4.129 4 C 0.042 3.958 5 H 0.102 0.898 6 C -0.167 4.167 7 C -0.208 4.208 8 N -0.325 5.325 9 C 0.300 3.700 10 O -0.404 6.404 11 C 0.294 3.706 12 O -0.373 6.373 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.322 4.322 16 C -0.103 4.103 17 C -0.120 4.120 18 N -0.144 5.144 19 N -0.152 5.152 20 C 0.119 3.881 21 C -0.594 4.594 22 H 0.043 0.957 23 C -0.175 4.175 24 N -0.570 5.570 25 Si 0.767 3.233 26 H -0.177 1.177 27 H -0.199 1.199 28 H -0.167 1.167 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.257 0.743 40 H 0.263 0.737 41 H 0.195 0.805 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.465 -1.425 -21.289 24.222 hybrid contribution 0.831 -0.139 -0.021 0.843 sum -10.634 -1.563 -21.310 23.867 Atomic orbital electron populations 1.24017 0.95977 1.02572 1.00310 1.22991 0.96307 0.98605 1.00611 1.21065 0.98208 0.96151 0.97487 1.21366 0.93325 0.99665 0.81434 0.89784 1.21987 0.97206 0.97316 1.00174 1.21826 0.99261 1.01302 0.98458 1.45755 1.18755 1.60749 1.07265 1.19313 0.86178 0.79886 0.84575 1.90832 1.17769 1.46398 1.85380 1.20518 0.87020 0.78326 0.84714 1.90667 1.17512 1.43893 1.85191 1.42455 1.18273 1.60354 1.05322 1.18372 0.92544 1.00837 0.81332 1.21564 0.95229 1.16889 0.98496 1.22929 0.96858 0.97638 0.92893 1.20269 0.88244 1.02470 1.01027 1.77322 0.96496 1.25997 1.14601 1.49006 1.12796 1.49650 1.03763 1.19741 0.75554 0.94307 0.98547 1.21216 0.95310 0.93431 1.49394 0.95701 1.25808 0.96010 1.02796 0.92904 1.70019 1.06387 1.35047 1.45528 0.85740 0.79375 0.78402 0.79762 1.17672 1.19942 1.16717 0.88600 0.87437 0.87904 0.89164 0.86896 0.90517 0.88100 0.92702 0.93196 0.95333 0.74287 0.73673 0.80474 0.89769 0.88043 0.90438 0.92556 0.92263 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 14.32 67.79 0.97 -1.21 16 2 C -0.17 -1.94 9.25 25.65 0.24 -1.71 16 3 C -0.09 -0.80 5.20 29.85 0.16 -0.64 16 4 C 0.15 2.10 2.24 45.00 0.10 2.20 16 5 H 0.08 1.48 7.58 -2.39 -0.02 1.46 16 6 C -0.13 -1.81 5.61 30.60 0.17 -1.64 16 7 C -0.15 -3.37 8.51 71.98 0.61 -2.76 16 8 N -0.67 -12.61 4.74 -444.02 -2.10 -14.71 16 9 C 0.52 14.05 6.45 87.22 0.56 14.62 16 10 O -0.53 -16.60 13.61 -3.30 -0.04 -16.64 16 11 C 0.51 16.26 7.85 87.22 0.68 16.94 16 12 O -0.50 -15.98 13.60 -3.40 -0.05 -16.03 16 13 N -0.62 -22.82 5.40 -309.57 -1.67 -24.49 16 14 C 0.29 12.28 7.68 131.25 1.01 13.29 16 15 C -0.29 -11.26 9.58 22.15 0.21 -11.05 16 16 C 0.06 2.38 7.20 43.06 0.31 2.69 16 17 C -0.06 -1.60 10.44 71.24 0.74 -0.86 16 18 N -0.32 -14.71 12.56 -47.49 -0.60 -15.31 16 19 N -0.37 -17.31 3.62 -348.38 -1.26 -18.57 16 20 C 0.24 11.60 5.09 85.63 0.44 12.04 16 21 C -0.56 -32.32 9.94 25.60 0.25 -32.07 16 22 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 23 C 0.03 1.44 5.47 84.66 0.46 1.91 16 24 N -0.93 -57.19 13.96 21.45 0.30 -56.89 16 25 Si 0.95 41.49 27.47 68.60 1.88 43.38 16 26 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 29 H 0.10 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.11 0.98 7.84 -2.91 -0.02 0.96 16 31 H 0.10 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.09 0.58 7.79 -2.39 -0.02 0.56 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.22 7.85 -2.39 -0.02 1.20 16 38 H 0.03 0.78 5.64 -2.38 -0.01 0.77 16 39 H 0.42 6.70 8.07 -92.71 -0.75 5.95 16 40 H 0.43 15.81 7.46 -92.71 -0.69 15.12 16 41 H 0.18 6.29 5.83 -2.92 -0.02 6.27 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 2.71 7.20 -2.38 -0.02 2.70 16 46 H 0.06 2.58 6.95 -2.39 -0.02 2.57 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.67 392.23 2.89 -71.78 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.49 Total: 35.73 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.92 Total: 11.75 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.33 Total: -129.97 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.09 Total: -32.67 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.38 kcal Total: -74.67 2.89 -71.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619646434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.695 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds