Wall clock time and date at job start Tue Mar 31 2020 18:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47370 * 2 1 4 4 H 1.09000 * 109.46866 * 304.99971 * 3 2 1 5 5 C 1.52997 * 109.46974 * 64.99746 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 C 1.52999 * 109.47000 * 185.00156 * 3 2 1 10 10 H 1.09000 * 109.47160 * 299.99635 * 9 3 2 11 11 N 1.46492 * 109.47381 * 59.99854 * 9 3 2 12 12 C 1.34781 * 119.99920 * 204.99632 * 11 9 3 13 13 O 1.21362 * 120.00071 * 0.02562 * 12 11 9 14 14 C 1.49305 * 119.99891 * 180.02562 * 12 11 9 15 15 O 1.21408 * 120.00214 * 0.02562 * 14 12 11 16 16 N 1.34781 * 119.99891 * 180.02562 * 14 12 11 17 17 C 1.40295 * 119.99797 * 179.97438 * 16 14 12 18 18 C 1.40723 * 126.10146 * 359.69558 * 17 16 14 19 19 N 1.30878 * 108.37523 * 179.85239 * 18 17 16 20 20 N 1.40062 * 108.43560 * 0.40261 * 19 18 17 21 21 C 1.37295 * 126.05573 * 179.74105 * 20 19 18 22 22 H 1.07995 * 120.00202 * 180.02562 * 21 20 19 23 23 C 1.39005 * 120.00072 * 0.02562 * 21 20 19 24 24 N 1.31288 * 119.99920 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00273 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47187 * 89.99904 * 25 23 21 27 27 H 1.48500 * 109.47689 * 209.99768 * 25 23 21 28 28 H 1.48502 * 109.47284 * 330.00273 * 25 23 21 29 29 C 1.35785 * 126.09876 * 180.02562 * 17 16 14 30 30 H 1.09003 * 109.46520 * 60.00311 * 1 2 3 31 31 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47190 * 300.00339 * 1 2 3 33 33 H 1.09006 * 109.47416 * 239.99817 * 2 1 3 34 34 H 1.08998 * 109.47077 * 120.00142 * 2 1 3 35 35 H 1.09000 * 109.47140 * 60.00393 * 5 3 2 36 36 H 1.09001 * 109.47375 * 300.00376 * 5 3 2 37 37 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 38 38 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 39 39 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 40 40 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.46922 * 180.02562 * 8 7 6 42 42 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 43 43 H 0.96998 * 120.00176 * 25.00271 * 11 9 3 44 44 H 0.96998 * 119.99903 * 0.02562 * 16 14 12 45 45 H 1.08006 * 125.81407 * 359.97438 * 18 17 16 46 46 H 0.96999 * 119.99831 * 180.02562 * 24 23 21 47 47 H 1.07996 * 126.24911 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.1448 3.5692 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0744 2.8875 -0.1263 9 6 3.5649 1.4443 -0.1258 10 1 3.9995 0.9053 0.7161 11 7 3.9524 0.7893 -1.3775 12 6 5.1698 0.2224 -1.4926 13 8 5.9447 0.2541 -0.5591 14 6 5.5650 -0.4447 -2.7686 15 8 4.7900 -0.4760 -3.7026 16 7 6.7821 -1.0120 -2.8835 17 6 7.1533 -1.6393 -4.0823 18 6 6.3584 -1.7561 -5.2376 19 7 7.0448 -2.3997 -6.1473 20 7 8.2960 -2.7265 -5.6093 21 6 9.2990 -3.4084 -6.2526 22 1 10.2294 -3.6087 -5.7421 23 6 9.1172 -3.8410 -7.5611 24 7 7.9864 -3.5971 -8.1819 25 14 10.4821 -4.7681 -8.4365 26 1 10.3244 -6.2251 -8.1958 27 1 10.4089 -4.4966 -9.8947 28 1 11.7984 -4.3200 -7.9151 29 6 8.3412 -2.2475 -4.3326 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0699 1.5876 2.1491 36 1 0.5490 2.1253 1.3969 37 1 1.8568 4.0564 2.2385 38 1 1.7099 4.1080 0.4653 39 1 4.1045 3.0327 2.0229 40 1 4.0327 4.5993 1.1813 41 1 5.1607 2.8888 -0.2157 42 1 3.6395 3.4263 -0.9681 43 1 3.3330 0.7637 -2.1235 44 1 7.4012 -0.9873 -2.1372 45 1 5.3537 -1.3772 -5.3545 46 1 7.8593 -3.8993 -9.0948 47 1 9.1702 -2.3364 -3.6462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746355391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:59 Heat of formation + Delta-G solvation = -32.564214 kcal Electronic energy + Delta-G solvation = -28460.543920 eV Core-core repulsion = 24450.396757 eV Total energy + Delta-G solvation = -4010.147162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.09576 -41.36831 -40.13819 -39.00653 -36.29500 -35.35391 -34.90212 -34.75554 -32.30608 -30.79861 -29.96119 -29.65145 -27.20551 -25.62799 -24.83125 -23.22966 -22.78835 -21.73976 -21.55159 -21.30740 -20.86856 -19.56783 -19.11095 -17.78680 -17.46066 -16.94914 -16.88706 -16.73903 -15.86271 -15.75352 -15.57331 -15.51537 -15.01958 -14.97602 -14.86242 -14.84603 -14.40679 -14.15770 -13.79155 -13.51930 -13.44425 -13.39082 -12.97301 -12.91455 -12.62582 -12.53122 -12.35113 -12.21445 -12.09055 -12.00103 -11.97577 -11.67164 -11.39288 -11.27200 -11.07543 -11.05786 -10.88093 -10.53546 -10.18136 -10.14774 -8.63310 -8.49546 -6.27288 0.28252 1.28857 1.30373 1.41972 1.58403 1.72054 2.03714 2.11590 2.52717 2.57630 2.92876 3.06992 3.49919 3.57526 3.72776 3.89607 4.13867 4.21794 4.33400 4.38666 4.40722 4.47511 4.51146 4.51505 4.56351 4.70808 4.83112 4.87156 4.94786 4.97313 4.99970 5.06576 5.16030 5.19369 5.20743 5.24959 5.26690 5.29821 5.32651 5.35549 5.41575 5.51398 5.59253 5.89829 6.01963 6.24554 6.48147 6.66644 6.80911 7.06471 7.40442 7.61884 8.49683 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002076 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.872671 B =13487.168062 C =14030.894957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.085 0.915 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.148 3.852 10 H 0.079 0.921 11 N -0.683 5.683 12 C 0.525 3.475 13 O -0.541 6.541 14 C 0.485 3.515 15 O -0.543 6.543 16 N -0.583 5.583 17 C -0.056 4.056 18 C -0.049 4.049 19 N -0.307 5.307 20 N -0.163 5.163 21 C -0.353 4.353 22 H 0.142 0.858 23 C -0.006 4.006 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.245 1.245 29 C -0.076 4.076 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.417 0.583 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 11.472 18.935 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.105 4.105 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.168 4.168 9 C 0.045 3.955 10 H 0.098 0.902 11 N -0.334 5.334 12 C 0.305 3.695 13 O -0.418 6.418 14 C 0.267 3.733 15 O -0.421 6.421 16 N -0.228 5.228 17 C -0.163 4.163 18 C -0.224 4.224 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.484 4.484 22 H 0.159 0.841 23 C -0.218 4.218 24 N -0.448 5.448 25 Si 0.839 3.161 26 H -0.189 1.189 27 H -0.201 1.201 28 H -0.168 1.168 29 C -0.226 4.226 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.254 0.746 44 H 0.260 0.740 45 H 0.192 0.808 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.020 11.000 17.571 23.477 hybrid contribution 0.549 -0.195 0.093 0.589 sum -10.472 10.805 17.664 23.204 Atomic orbital electron populations 1.21789 0.94521 1.01834 1.02547 1.21596 0.97023 0.95848 1.01717 1.21446 0.91651 0.96890 1.00540 0.89649 1.21594 1.01918 0.95462 0.95617 1.21571 0.94585 0.96637 1.02809 1.21484 0.96907 1.00673 0.96078 1.21929 1.00400 0.94671 0.99771 1.21317 0.96102 0.93113 0.84985 0.90245 1.45850 1.14816 1.54572 1.18209 1.19650 0.83490 0.79491 0.86822 1.90728 1.51574 1.59471 1.40057 1.20337 0.82589 0.81415 0.89001 1.90644 1.51589 1.59309 1.40593 1.42096 1.15546 1.51334 1.13781 1.17295 0.96479 1.13259 0.89229 1.24250 1.01366 1.04955 0.91833 1.78157 0.92303 1.21840 1.21608 1.44844 1.09789 1.31163 1.07296 1.20655 0.95164 1.34479 0.98079 0.84092 1.26897 1.00379 0.97301 0.97213 1.70379 1.25127 1.37097 1.12242 0.84578 0.76924 0.77821 0.76809 1.18858 1.20107 1.16785 1.22000 1.00469 1.09866 0.90312 0.92436 0.93054 0.91253 0.93123 0.92197 0.91717 0.89740 0.90527 0.91402 0.91972 0.90966 0.93314 0.91040 0.74603 0.73966 0.80756 0.91227 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 71.98 0.70 -1.10 16 2 C -0.12 -1.84 5.32 30.60 0.16 -1.67 16 3 C -0.09 -1.14 1.76 -10.79 -0.02 -1.15 16 4 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.11 -1.07 4.96 30.59 0.15 -0.92 16 6 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 7 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 8 C -0.13 -2.20 5.50 30.61 0.17 -2.03 16 9 C 0.15 2.69 1.90 45.01 0.09 2.77 16 10 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 11 N -0.68 -15.59 4.30 -443.94 -1.91 -17.50 16 12 C 0.53 15.54 7.85 87.22 0.68 16.22 16 13 O -0.54 -17.31 16.14 -3.29 -0.05 -17.37 16 14 C 0.48 17.49 7.85 87.22 0.69 18.17 16 15 O -0.54 -22.17 13.62 -3.43 -0.05 -22.21 16 16 N -0.58 -21.84 5.45 -305.32 -1.66 -23.51 16 17 C -0.06 -2.62 6.90 37.82 0.26 -2.36 16 18 C -0.05 -2.61 10.84 85.44 0.93 -1.68 16 19 N -0.31 -18.33 10.39 -56.43 -0.59 -18.91 16 20 N -0.16 -9.02 3.73 -189.99 -0.71 -9.73 16 21 C -0.35 -18.55 10.25 84.02 0.86 -17.69 16 22 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 23 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 24 N -0.82 -46.83 11.81 21.66 0.26 -46.57 16 25 Si 1.02 38.21 29.55 68.60 2.03 40.24 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.28 -10.23 7.11 99.48 0.71 -9.53 16 28 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 29 C -0.08 -3.54 11.50 83.41 0.96 -2.58 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.65 6.56 -2.39 -0.02 0.63 16 33 H 0.05 0.92 7.30 -2.38 -0.02 0.90 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.65 6.57 -2.39 -0.02 0.63 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.42 8.96 7.86 -92.71 -0.73 8.23 16 44 H 0.42 13.40 8.29 -92.71 -0.77 12.64 16 45 H 0.18 9.18 5.92 -2.91 -0.02 9.16 16 46 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.19 7.01 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -71.07 381.79 3.28 -67.79 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.49 Total: 43.79 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.45 Total: 3.97 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.61 Total: -116.22 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -71.07 3.28 -67.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746355391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.228 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds