Wall clock time and date at job start Tue Mar 31 2020 18:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53013 * 109.46904 * 2 1 4 4 H 1.08999 * 109.46705 * 55.00679 * 3 2 1 5 5 C 1.52992 * 109.47279 * 295.00376 * 3 2 1 6 6 C 1.52999 * 109.46921 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 60.00100 * 6 5 3 8 8 C 1.53005 * 109.46995 * 299.99723 * 7 6 5 9 9 C 1.52999 * 109.46546 * 174.99938 * 3 2 1 10 10 H 1.08999 * 109.47014 * 60.00930 * 9 3 2 11 11 N 1.46499 * 109.47493 * 300.00331 * 9 3 2 12 12 C 1.34777 * 119.99665 * 155.28120 * 11 9 3 13 13 O 1.21363 * 120.00411 * 359.72017 * 12 11 9 14 14 C 1.49313 * 119.99574 * 179.72291 * 12 11 9 15 15 O 1.21403 * 120.00043 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99573 * 179.97438 * 14 12 11 17 17 C 1.40290 * 119.99703 * 180.02562 * 16 14 12 18 18 C 1.40729 * 126.10286 * 0.02801 * 17 16 14 19 19 N 1.30873 * 108.37770 * 179.97438 * 18 17 16 20 20 N 1.40060 * 108.43743 * 0.02562 * 19 18 17 21 21 C 1.37297 * 126.05749 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00018 * 180.02562 * 21 20 19 23 23 C 1.39005 * 119.99651 * 0.02562 * 21 20 19 24 24 N 1.31285 * 120.00359 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99994 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46969 * 89.99584 * 25 23 21 27 27 H 1.48498 * 109.47170 * 210.00039 * 25 23 21 28 28 H 1.48503 * 109.46915 * 330.00048 * 25 23 21 29 29 C 1.35790 * 126.10262 * 179.71597 * 17 16 14 30 30 H 1.09001 * 109.47303 * 59.99476 * 1 2 3 31 31 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46710 * 299.99588 * 1 2 3 33 33 H 1.09001 * 109.47214 * 240.00972 * 2 1 3 34 34 H 1.08992 * 109.47291 * 119.99922 * 2 1 3 35 35 H 1.08999 * 109.47499 * 299.99816 * 5 3 2 36 36 H 1.09006 * 109.47246 * 59.99826 * 5 3 2 37 37 H 1.09005 * 109.47368 * 180.02562 * 6 5 3 38 38 H 1.09000 * 109.47077 * 299.99701 * 6 5 3 39 39 H 1.08999 * 109.47056 * 60.00198 * 7 6 5 40 40 H 1.09000 * 109.46999 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.47108 * 300.00306 * 8 7 6 42 42 H 1.08995 * 109.46860 * 179.97438 * 8 7 6 43 43 H 0.97001 * 119.99790 * 334.99833 * 11 9 3 44 44 H 0.97000 * 120.00483 * 0.02562 * 16 14 12 45 45 H 1.07997 * 125.80891 * 0.02562 * 18 17 16 46 46 H 0.96993 * 120.00045 * 179.97438 * 24 23 21 47 47 H 1.07998 * 126.24447 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 2.1446 3.5694 -1.3069 7 6 3.6694 3.5718 -1.1809 8 6 4.0742 2.8877 0.1264 9 6 3.5648 1.4444 0.1257 10 1 3.9994 0.9055 -0.7162 11 7 3.9524 0.7893 1.3775 12 6 5.1718 0.2273 1.4944 13 8 5.9469 0.2595 0.5611 14 6 5.5692 -0.4349 2.7723 15 8 4.7936 -0.4675 3.7058 16 7 6.7884 -0.9973 2.8891 17 6 7.1615 -1.6200 4.0895 18 6 6.3688 -1.7320 5.2469 19 7 7.0552 -2.3755 6.1565 20 7 8.3080 -2.6984 5.6200 21 6 9.3138 -3.3743 6.2656 22 1 10.2455 -3.5713 5.7562 23 6 9.1327 -3.8050 7.5747 24 7 8.0002 -3.5651 8.1941 25 14 10.5007 -4.7252 8.4529 26 1 11.3778 -3.7549 9.1561 27 1 9.9109 -5.6651 9.4398 28 1 11.3010 -5.4871 7.4607 29 6 8.3499 -2.2274 4.3402 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 2.0697 1.5878 -2.1491 36 1 0.5488 2.1253 -1.3968 37 1 1.8558 4.0570 -2.2380 38 1 1.7096 4.1081 -0.4650 39 1 4.1044 3.0331 -2.0228 40 1 4.0323 4.5996 -1.1811 41 1 3.6392 3.4264 0.9682 42 1 5.1605 2.8890 0.2159 43 1 3.3329 0.7637 2.1235 44 1 7.4079 -0.9716 2.1431 45 1 5.3646 -1.3523 5.3641 46 1 7.8738 -3.8660 9.1074 47 1 9.1777 -2.3189 3.6526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746355393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:04 Heat of formation + Delta-G solvation = -12.051073 kcal Electronic energy + Delta-G solvation = -28459.130254 eV Core-core repulsion = 24449.872608 eV Total energy + Delta-G solvation = -4009.257646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.72103 -39.80873 -38.91731 -37.69976 -34.84021 -34.25862 -33.91674 -33.13165 -30.33800 -30.01721 -29.11022 -28.00284 -25.46736 -24.25038 -24.14531 -22.18802 -21.00562 -20.99195 -20.55364 -19.96305 -19.44074 -18.13423 -17.43472 -16.61620 -15.83178 -15.57638 -15.49802 -15.16502 -15.07184 -14.75896 -14.31991 -14.28434 -14.02625 -13.67395 -13.58252 -13.53693 -13.10625 -13.03837 -12.96505 -12.77520 -11.95684 -11.77800 -11.74410 -11.65437 -11.54433 -11.39882 -11.29224 -11.21974 -11.07791 -10.88550 -10.77729 -10.59990 -10.55819 -10.37196 -10.28797 -9.23371 -9.19937 -9.09596 -8.87443 -8.12978 -6.77773 -6.60551 -4.27806 1.67495 2.61335 2.93250 3.03688 3.08553 3.33703 3.72077 3.75456 3.97036 4.23502 4.35414 4.38412 4.51501 4.61694 4.73057 4.85633 4.95276 4.98068 5.01655 5.04741 5.12820 5.16706 5.18096 5.31367 5.41931 5.44514 5.66507 5.70683 5.73502 5.79347 5.83626 5.88868 5.94126 5.99653 6.07326 6.14689 6.20106 6.31770 6.36134 6.76180 6.88778 6.92707 7.16306 7.25591 7.77241 7.87614 8.11573 8.18581 8.49271 8.69748 9.31221 9.59879 10.35267 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002075 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.855413 B =13489.218850 C =14032.494438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.132 4.132 9 C 0.150 3.850 10 H 0.091 0.909 11 N -0.699 5.699 12 C 0.516 3.484 13 O -0.529 6.529 14 C 0.483 3.517 15 O -0.523 6.523 16 N -0.584 5.584 17 C -0.069 4.069 18 C -0.027 4.027 19 N -0.260 5.260 20 N -0.138 5.138 21 C -0.321 4.321 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.768 5.768 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.263 1.263 29 C -0.078 4.078 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.412 0.588 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 10.665 -17.120 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.113 4.113 4 H 0.096 0.904 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.170 4.170 9 C 0.045 3.955 10 H 0.109 0.891 11 N -0.352 5.352 12 C 0.297 3.703 13 O -0.405 6.405 14 C 0.263 3.737 15 O -0.401 6.401 16 N -0.226 5.226 17 C -0.175 4.175 18 C -0.203 4.203 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.136 0.864 23 C -0.172 4.172 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.187 1.187 29 C -0.229 4.229 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.137 10.150 -15.706 21.765 hybrid contribution 0.707 -0.049 -0.515 0.877 sum -10.429 10.101 -16.221 21.770 Atomic orbital electron populations 1.21809 0.95651 1.01738 1.01771 1.21607 0.96025 0.95760 1.02753 1.21471 0.93671 0.96912 0.99245 0.90381 1.21591 1.01035 0.95532 0.96753 1.21585 0.95799 0.96701 1.01878 1.21490 0.95785 1.00610 0.97521 1.21960 1.01799 0.95013 0.98257 1.21106 0.94433 0.93132 0.86789 0.89128 1.45806 1.16033 1.56181 1.17204 1.20283 0.82502 0.79074 0.88392 1.90724 1.51016 1.58445 1.40287 1.19697 0.83327 0.82472 0.88165 1.90652 1.51131 1.58793 1.39520 1.42152 1.14517 1.51409 1.14549 1.17256 0.97291 1.14416 0.88524 1.24146 1.01115 1.04274 0.90726 1.78258 0.90729 1.20260 1.19876 1.44563 1.09785 1.30238 1.05941 1.19921 0.94144 1.34307 0.97013 0.86441 1.25669 0.97812 0.96919 0.96759 1.70206 1.22289 1.35266 1.11639 0.85804 0.79738 0.79153 0.79338 1.19529 1.20046 1.18738 1.21308 0.99401 1.11522 0.90676 0.92608 0.92731 0.92672 0.91831 0.91365 0.91644 0.91180 0.91880 0.91865 0.91705 0.91706 0.91544 0.91157 0.75147 0.75617 0.80569 0.91358 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.12 -0.99 5.32 -26.72 -0.14 -1.14 16 3 C -0.09 -0.70 1.76 -90.62 -0.16 -0.86 16 4 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.11 -0.70 4.96 -26.74 -0.13 -0.83 16 6 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 7 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 8 C -0.13 -1.20 5.49 -26.70 -0.15 -1.35 16 9 C 0.15 1.44 1.90 -67.90 -0.13 1.31 16 10 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 11 N -0.70 -8.23 4.30 -54.25 -0.23 -8.47 16 12 C 0.52 7.78 7.85 -11.65 -0.09 7.69 16 13 O -0.53 -8.67 16.14 5.49 0.09 -8.58 16 14 C 0.48 8.74 7.85 -11.65 -0.09 8.65 16 15 O -0.52 -10.56 13.62 5.45 0.07 -10.49 16 16 N -0.58 -11.08 5.45 -10.45 -0.06 -11.14 16 17 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 18 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 19 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 20 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 21 C -0.32 -8.42 10.25 -14.82 -0.15 -8.58 16 22 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 23 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.20 11.81 55.50 0.66 -20.54 16 25 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 28 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 29 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 30 H 0.05 0.33 6.56 -51.93 -0.34 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.64 7.30 -51.93 -0.38 0.26 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.41 4.57 7.86 -40.82 -0.32 4.25 16 44 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 45 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 46 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -31.77 381.79 -7.56 -39.33 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.04 Total: 13.12 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.05 Total: -1.70 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.64 Total: -51.13 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.16 Total: -19.08 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.77 -7.56 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746355393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.280 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds