Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.46776 * 2 1 4 4 H 1.09003 * 108.44722 * 52.69415 * 3 2 1 5 5 C 1.52573 * 108.51160 * 170.23468 * 3 2 1 6 6 C 1.50879 * 109.35947 * 206.26738 * 5 3 2 7 7 C 1.53599 * 109.95699 * 268.02571 * 6 5 3 8 8 N 1.47604 * 112.33822 * 40.83243 * 7 6 5 9 9 C 1.34783 * 118.64532 * 222.04177 * 8 7 6 10 10 O 1.21366 * 119.99689 * 1.57005 * 9 8 7 11 11 C 1.49300 * 120.00105 * 181.57337 * 9 8 7 12 12 O 1.21414 * 120.00117 * 353.82503 * 11 9 8 13 13 N 1.34776 * 120.00136 * 173.83128 * 11 9 8 14 14 C 1.40294 * 120.00342 * 180.02562 * 13 11 9 15 15 C 1.40723 * 126.09952 * 0.02562 * 14 13 11 16 16 N 1.30874 * 108.38038 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.43333 * 0.02562 * 16 15 14 18 18 C 1.37293 * 126.05771 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00322 * 180.02562 * 18 17 16 20 20 C 1.39005 * 119.99553 * 0.02562 * 18 17 16 21 21 N 1.31277 * 120.00287 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47141 * 59.99972 * 22 20 18 24 24 H 1.48495 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47288 * 300.00237 * 22 20 18 26 26 C 1.35783 * 126.10189 * 180.02562 * 14 13 11 27 27 C 1.44582 * 122.71433 * 41.75937 * 8 7 6 28 28 C 1.47085 * 108.51611 * 295.00291 * 3 2 1 29 29 H 1.08997 * 109.47487 * 299.99439 * 1 2 3 30 30 H 1.08998 * 109.47884 * 59.99741 * 1 2 3 31 31 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47159 * 240.00854 * 2 1 3 33 33 H 1.08998 * 109.47884 * 120.00259 * 2 1 3 34 34 H 1.08999 * 109.48594 * 326.23498 * 5 3 2 35 35 H 1.08999 * 109.48992 * 86.30329 * 5 3 2 36 36 H 1.09000 * 109.36445 * 28.30694 * 6 5 3 37 37 H 1.09004 * 109.36552 * 147.92063 * 6 5 3 38 38 H 1.08994 * 108.93666 * 280.02985 * 7 6 5 39 39 H 1.09000 * 108.75533 * 161.51045 * 7 6 5 40 40 H 0.97001 * 119.99537 * 359.97438 * 13 11 9 41 41 H 1.08003 * 125.81141 * 0.27180 * 15 14 13 42 42 H 0.97003 * 120.00041 * 180.02562 * 21 20 18 43 43 H 1.07999 * 126.24791 * 359.97438 * 26 14 13 44 44 H 1.08997 * 109.45055 * 29.56655 * 27 8 7 45 45 H 1.08997 * 109.45251 * 149.51891 * 27 8 7 46 46 H 1.08997 * 109.32778 * 55.68065 * 28 3 2 47 47 H 1.09004 * 109.33162 * 296.20738 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5640 1.9767 0.8225 5 6 3.5456 1.4241 0.2454 6 6 3.9653 2.7280 0.8779 7 6 4.3787 3.7297 -0.2107 8 7 3.4835 3.6848 -1.3834 9 6 4.0284 3.7443 -2.6148 10 8 5.2338 3.8041 -2.7427 11 6 3.1491 3.7367 -3.8214 12 8 1.9534 3.5643 -3.7001 13 7 3.6826 3.9211 -5.0452 14 6 2.8563 3.9144 -6.1790 15 6 1.4614 3.7283 -6.1873 16 7 1.0448 3.7857 -7.4266 17 7 2.1513 4.0091 -8.2559 18 6 2.1251 4.1298 -9.6233 19 1 3.0417 4.3015 -10.1679 20 6 0.9186 4.0310 -10.3066 21 7 -0.1957 3.8228 -9.6445 22 14 0.8829 4.1945 -12.1671 23 1 1.7266 3.1336 -12.7735 24 1 -0.5142 4.0528 -12.6498 25 1 1.4080 5.5278 -12.5571 26 6 3.2597 4.0865 -7.4640 27 6 2.0468 3.5737 -1.2660 28 6 1.6397 2.0795 -1.2640 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.7952 0.5992 0.9127 35 1 4.0671 1.2956 -0.7031 36 1 3.1328 3.1362 1.4511 37 1 4.8088 2.5510 1.5454 38 1 5.3951 3.5030 -0.5324 39 1 4.3585 4.7344 0.2116 40 1 4.6378 4.0591 -5.1420 41 1 0.8399 3.5695 -5.3185 42 1 -1.0375 3.7535 -10.1215 43 1 4.2731 4.2533 -7.7983 44 1 1.7215 4.0395 -0.3358 45 1 1.5736 4.0772 -2.1090 46 1 0.5591 1.9997 -1.3819 47 1 2.1291 1.5712 -2.0949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746405766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = 20.274996 kcal Electronic energy + Delta-G solvation = -29400.863435 eV Core-core repulsion = 25393.007553 eV Total energy + Delta-G solvation = -4007.855882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.98208 -39.71920 -38.59311 -37.82487 -35.46806 -34.31670 -33.28092 -32.91765 -30.69410 -30.32895 -28.18381 -27.34446 -25.65293 -25.09074 -23.96340 -22.60955 -21.31181 -20.78038 -20.24760 -19.51917 -19.20837 -17.73223 -17.26942 -16.72788 -15.98210 -15.57337 -15.38507 -15.17891 -14.92122 -14.88240 -14.56007 -14.12448 -13.94981 -13.68714 -13.45551 -13.22029 -13.02544 -12.88827 -12.85120 -12.46711 -12.22229 -11.89832 -11.73075 -11.52548 -11.37405 -11.27651 -11.17520 -11.10451 -11.01216 -10.84952 -10.58800 -10.57237 -10.40197 -10.38085 -10.16913 -9.23014 -8.92406 -8.84545 -8.56466 -8.13583 -6.78014 -6.61017 -4.28297 1.67340 2.57134 2.93911 3.03188 3.06820 3.31583 3.70275 3.71067 3.88383 4.36587 4.41086 4.55452 4.61322 4.67248 4.88558 4.93450 4.97582 4.98452 5.10121 5.18349 5.32211 5.39660 5.47152 5.53151 5.57547 5.66151 5.76375 5.82649 5.90604 5.92479 5.97452 6.02451 6.12244 6.18671 6.21304 6.30268 6.35436 6.43557 6.54666 6.75961 6.87851 7.00534 7.16228 7.18814 7.73906 7.84244 8.11643 8.18193 8.49385 8.69410 9.30462 9.59307 10.34671 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002642 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.933039 B =10595.622839 C =11676.281719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.087 4.087 4 H 0.064 0.936 5 C -0.113 4.113 6 C -0.129 4.129 7 C 0.107 3.893 8 N -0.574 5.574 9 C 0.508 3.492 10 O -0.534 6.534 11 C 0.483 3.517 12 O -0.512 6.512 13 N -0.583 5.583 14 C -0.069 4.069 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.117 0.883 20 C 0.047 3.953 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.078 4.078 27 C 0.083 3.917 28 C -0.122 4.122 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.408 0.592 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.148 0.852 44 H 0.064 0.936 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -2.816 18.243 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.106 4.106 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.167 4.167 7 C -0.014 4.014 8 N -0.307 5.307 9 C 0.291 3.709 10 O -0.411 6.411 11 C 0.265 3.735 12 O -0.390 6.390 13 N -0.225 5.225 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.040 4.040 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.243 0.757 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.083 0.917 45 H 0.150 0.850 46 H 0.098 0.902 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.535 -2.995 17.478 18.082 hybrid contribution 1.270 0.105 -0.178 1.287 sum 4.806 -2.890 17.300 18.186 Atomic orbital electron populations 1.21864 0.95900 1.01458 1.02083 1.21706 0.95997 0.96580 1.01675 1.20205 0.95258 0.96228 0.98864 0.91780 1.21164 0.95954 0.96831 1.01135 1.21686 1.01947 0.95717 0.97310 1.21852 0.94865 0.99219 0.85509 1.47563 1.08283 1.70185 1.04711 1.20358 0.88057 0.77494 0.84954 1.90707 1.14761 1.49277 1.86404 1.19652 0.88131 0.81616 0.84079 1.90487 1.14930 1.49437 1.84181 1.42186 1.10864 1.65556 1.03859 1.17248 0.91243 1.24207 0.84776 1.24144 0.92138 1.07150 0.96721 1.78260 1.07595 1.24853 0.98440 1.44550 1.02877 1.37625 1.05437 1.19872 0.96412 1.51753 0.77416 0.86514 1.25653 0.94648 0.95391 1.01384 1.70193 0.98485 1.34130 1.36583 0.85878 0.78280 0.79543 0.80380 1.19100 1.20093 1.19101 1.21309 0.93264 1.18828 0.89541 1.22517 0.78776 0.97761 1.04915 1.21208 1.02141 0.95512 0.97137 0.92966 0.91958 0.93066 0.92075 0.92438 0.91885 0.91713 0.91425 0.90649 0.89136 0.91718 0.75679 0.80497 0.91310 0.83423 0.91717 0.84979 0.90248 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.62 37.15 0.36 -1.01 16 2 C -0.12 -1.11 5.27 -26.73 -0.14 -1.25 16 3 C -0.09 -0.82 1.67 -93.67 -0.16 -0.97 16 4 H 0.06 0.56 7.33 -51.93 -0.38 0.18 16 5 C -0.11 -1.03 4.93 -28.01 -0.14 -1.17 16 6 C -0.13 -1.02 5.70 -27.48 -0.16 -1.17 16 7 C 0.11 1.08 6.08 -3.13 -0.02 1.06 16 8 N -0.57 -7.22 2.25 -173.32 -0.39 -7.61 16 9 C 0.51 7.88 7.68 -11.65 -0.09 7.80 16 10 O -0.53 -9.04 15.76 5.48 0.09 -8.95 16 11 C 0.48 8.55 7.70 -11.66 -0.09 8.46 16 12 O -0.51 -9.56 9.36 5.44 0.05 -9.51 16 13 N -0.58 -10.88 5.45 -10.46 -0.06 -10.93 16 14 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 15 C -0.03 -0.65 10.84 -17.02 -0.18 -0.84 16 16 N -0.26 -7.36 10.39 30.81 0.32 -7.04 16 17 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 18 C -0.32 -8.38 10.25 -14.82 -0.15 -8.53 16 19 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -20.99 11.81 55.50 0.66 -20.33 16 22 Si 0.94 18.59 29.55 -169.99 -5.02 13.57 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 26 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 27 C 0.08 0.98 4.98 -4.08 -0.02 0.96 16 28 C -0.12 -1.40 4.23 -28.59 -0.12 -1.52 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.60 6.38 -51.93 -0.33 0.26 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 34 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 35 H 0.06 0.74 7.48 -51.93 -0.39 0.35 16 36 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.01 6.94 -51.93 -0.36 0.65 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.41 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.18 4.27 5.92 -52.48 -0.31 3.96 16 42 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 44 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 45 H 0.13 1.88 4.88 -53.62 -0.26 1.62 16 46 H 0.08 0.90 6.13 -51.93 -0.32 0.58 16 47 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -30.66 369.40 -7.39 -38.05 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.78 Total: 12.21 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.77 Total: -1.24 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.49 Total: -49.69 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.14 Total: -18.46 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.66 -7.39 -38.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.323 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds