Wall clock time and date at job start Tue Mar 31 2020 18:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.46776 * 2 1 4 4 H 1.09003 * 108.44722 * 52.69415 * 3 2 1 5 5 C 1.52573 * 108.51160 * 170.23468 * 3 2 1 6 6 C 1.50879 * 109.35947 * 206.26738 * 5 3 2 7 7 C 1.53599 * 109.95699 * 268.02571 * 6 5 3 8 8 N 1.47604 * 112.33822 * 40.83243 * 7 6 5 9 9 C 1.34783 * 118.64532 * 222.04177 * 8 7 6 10 10 O 1.21366 * 119.99689 * 1.57005 * 9 8 7 11 11 C 1.49300 * 120.00105 * 181.57337 * 9 8 7 12 12 O 1.21414 * 120.00117 * 353.82503 * 11 9 8 13 13 N 1.34776 * 120.00136 * 173.83128 * 11 9 8 14 14 C 1.40294 * 120.00342 * 180.02562 * 13 11 9 15 15 C 1.40723 * 126.09952 * 0.02562 * 14 13 11 16 16 N 1.30874 * 108.38038 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.43333 * 0.02562 * 16 15 14 18 18 C 1.37293 * 126.05771 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00322 * 180.02562 * 18 17 16 20 20 C 1.39005 * 119.99553 * 0.02562 * 18 17 16 21 21 N 1.31277 * 120.00287 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47141 * 59.99972 * 22 20 18 24 24 H 1.48495 * 109.47268 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47288 * 300.00237 * 22 20 18 26 26 C 1.35783 * 126.10189 * 180.02562 * 14 13 11 27 27 C 1.44582 * 122.71433 * 41.75937 * 8 7 6 28 28 C 1.47085 * 108.51611 * 295.00291 * 3 2 1 29 29 H 1.08997 * 109.47487 * 299.99439 * 1 2 3 30 30 H 1.08998 * 109.47884 * 59.99741 * 1 2 3 31 31 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47159 * 240.00854 * 2 1 3 33 33 H 1.08998 * 109.47884 * 120.00259 * 2 1 3 34 34 H 1.08999 * 109.48594 * 326.23498 * 5 3 2 35 35 H 1.08999 * 109.48992 * 86.30329 * 5 3 2 36 36 H 1.09000 * 109.36445 * 28.30694 * 6 5 3 37 37 H 1.09004 * 109.36552 * 147.92063 * 6 5 3 38 38 H 1.08994 * 108.93666 * 280.02985 * 7 6 5 39 39 H 1.09000 * 108.75533 * 161.51045 * 7 6 5 40 40 H 0.97001 * 119.99537 * 359.97438 * 13 11 9 41 41 H 1.08003 * 125.81141 * 0.27180 * 15 14 13 42 42 H 0.97003 * 120.00041 * 180.02562 * 21 20 18 43 43 H 1.07999 * 126.24791 * 359.97438 * 26 14 13 44 44 H 1.08997 * 109.45055 * 29.56655 * 27 8 7 45 45 H 1.08997 * 109.45251 * 149.51891 * 27 8 7 46 46 H 1.08997 * 109.32778 * 55.68065 * 28 3 2 47 47 H 1.09004 * 109.33162 * 296.20738 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5640 1.9767 0.8225 5 6 3.5456 1.4241 0.2454 6 6 3.9653 2.7280 0.8779 7 6 4.3787 3.7297 -0.2107 8 7 3.4835 3.6848 -1.3834 9 6 4.0284 3.7443 -2.6148 10 8 5.2338 3.8041 -2.7427 11 6 3.1491 3.7367 -3.8214 12 8 1.9534 3.5643 -3.7001 13 7 3.6826 3.9211 -5.0452 14 6 2.8563 3.9144 -6.1790 15 6 1.4614 3.7283 -6.1873 16 7 1.0448 3.7857 -7.4266 17 7 2.1513 4.0091 -8.2559 18 6 2.1251 4.1298 -9.6233 19 1 3.0417 4.3015 -10.1679 20 6 0.9186 4.0310 -10.3066 21 7 -0.1957 3.8228 -9.6445 22 14 0.8829 4.1945 -12.1671 23 1 1.7266 3.1336 -12.7735 24 1 -0.5142 4.0528 -12.6498 25 1 1.4080 5.5278 -12.5571 26 6 3.2597 4.0865 -7.4640 27 6 2.0468 3.5737 -1.2660 28 6 1.6397 2.0795 -1.2640 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.7952 0.5992 0.9127 35 1 4.0671 1.2956 -0.7031 36 1 3.1328 3.1362 1.4511 37 1 4.8088 2.5510 1.5454 38 1 5.3951 3.5030 -0.5324 39 1 4.3585 4.7344 0.2116 40 1 4.6378 4.0591 -5.1420 41 1 0.8399 3.5695 -5.3185 42 1 -1.0375 3.7535 -10.1215 43 1 4.2731 4.2533 -7.7983 44 1 1.7215 4.0395 -0.3358 45 1 1.5736 4.0772 -2.1090 46 1 0.5591 1.9997 -1.3819 47 1 2.1291 1.5712 -2.0949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746405766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:42 Heat of formation + Delta-G solvation = 1.708494 kcal Electronic energy + Delta-G solvation = -29401.668539 eV Core-core repulsion = 25393.007553 eV Total energy + Delta-G solvation = -4008.660986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.29454 -41.42280 -39.81887 -39.11017 -36.61378 -35.78907 -34.96862 -33.88016 -32.28296 -31.54264 -29.92407 -28.42520 -27.10535 -26.26098 -25.30025 -23.56683 -22.94911 -22.10450 -21.30339 -21.02257 -20.41616 -19.40514 -18.64029 -17.95286 -17.44404 -17.16979 -16.74291 -16.55998 -16.07031 -15.81128 -15.66305 -15.53372 -15.26309 -15.10156 -14.87275 -14.63979 -14.27594 -13.93246 -13.73059 -13.50003 -13.43348 -13.26851 -13.07027 -12.91972 -12.88588 -12.66242 -12.26338 -12.25012 -12.13282 -11.94973 -11.86892 -11.77334 -11.36947 -11.17822 -11.12952 -11.02409 -10.85726 -10.15180 -10.12949 -9.70861 -8.59981 -8.48358 -6.25783 0.30604 1.30810 1.31026 1.42047 1.56804 1.72843 2.04462 2.11969 2.49530 2.54524 2.86788 3.07940 3.43225 3.69199 3.84174 3.91153 4.08052 4.17536 4.30263 4.39861 4.40163 4.51617 4.53366 4.61855 4.69599 4.72419 4.78149 4.88785 4.96468 4.97537 4.99078 4.99227 5.13688 5.16733 5.20310 5.23766 5.26833 5.32954 5.35564 5.41744 5.50105 5.59827 5.62649 5.91739 6.00340 6.23953 6.43905 6.68586 6.79218 7.10035 7.41656 7.64150 8.50558 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002642 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.933039 B =10595.622839 C =11676.281719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.084 0.916 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.102 3.898 8 N -0.561 5.561 9 C 0.511 3.489 10 O -0.550 6.550 11 C 0.484 3.516 12 O -0.521 6.521 13 N -0.585 5.585 14 C -0.054 4.054 15 C -0.045 4.045 16 N -0.307 5.307 17 N -0.164 5.164 18 C -0.355 4.355 19 H 0.140 0.860 20 C -0.004 4.004 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.254 1.254 26 C -0.078 4.078 27 C 0.082 3.918 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.420 0.580 41 H 0.179 0.821 42 H 0.278 0.722 43 H 0.185 0.815 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -2.540 20.055 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.019 4.019 8 N -0.293 5.293 9 C 0.293 3.707 10 O -0.429 6.429 11 C 0.266 3.734 12 O -0.399 6.399 13 N -0.230 5.230 14 C -0.160 4.160 15 C -0.220 4.220 16 N -0.139 5.139 17 N 0.068 4.932 18 C -0.486 4.486 19 H 0.157 0.843 20 C -0.216 4.216 21 N -0.448 5.448 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.178 1.178 26 C -0.229 4.229 27 C -0.040 4.040 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.257 0.743 41 H 0.196 0.804 42 H 0.088 0.912 43 H 0.202 0.798 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.910 -2.720 19.351 20.148 hybrid contribution 0.884 -0.005 -0.508 1.020 sum 5.794 -2.724 18.843 19.901 Atomic orbital electron populations 1.21856 0.95714 1.01695 1.01988 1.21693 0.96152 0.96430 1.01533 1.20180 0.95813 0.96300 0.97969 0.89808 1.21160 0.95200 0.98380 1.00239 1.21691 1.03492 0.94090 0.96584 1.22139 0.93659 1.01228 0.84841 1.47680 1.08944 1.68156 1.04489 1.19872 0.87389 0.78313 0.85115 1.90703 1.14936 1.50681 1.86549 1.20257 0.88369 0.80182 0.84587 1.90511 1.15779 1.49010 1.84628 1.42142 1.11084 1.66594 1.03165 1.17280 0.90701 1.22065 0.85999 1.24267 0.93607 1.07996 0.96167 1.78152 1.09564 1.26496 0.99675 1.44816 1.03294 1.38999 1.06057 1.20592 0.97867 1.52530 0.77588 0.84278 1.26853 0.93765 0.94118 1.06859 1.70364 0.99327 1.36126 1.38955 0.84661 0.78268 0.80159 0.73193 1.17854 1.20136 1.17793 1.21982 0.94151 1.17281 0.89452 1.22480 0.78170 0.97936 1.05411 1.21132 1.01712 0.95082 0.97321 0.91631 0.93409 0.92756 0.93926 0.90839 0.90319 0.94498 0.89679 0.88406 0.90246 0.89694 0.74263 0.80438 0.91244 0.79816 0.88486 0.87499 0.90421 0.94933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.62 71.98 0.69 -1.84 16 2 C -0.12 -2.02 5.27 30.59 0.16 -1.86 16 3 C -0.08 -1.41 1.67 -12.77 -0.02 -1.43 16 4 H 0.08 1.13 7.33 -2.39 -0.02 1.11 16 5 C -0.11 -1.78 4.93 29.76 0.15 -1.63 16 6 C -0.12 -1.46 5.70 30.11 0.17 -1.28 16 7 C 0.10 1.77 6.08 86.37 0.52 2.30 16 8 N -0.56 -13.35 2.25 -820.61 -1.84 -15.19 16 9 C 0.51 15.64 7.68 87.22 0.67 16.31 16 10 O -0.55 -18.23 15.76 -3.30 -0.05 -18.28 16 11 C 0.48 17.32 7.70 87.22 0.67 17.99 16 12 O -0.52 -20.07 9.36 -3.45 -0.03 -20.10 16 13 N -0.59 -21.95 5.45 -305.33 -1.66 -23.61 16 14 C -0.05 -2.50 6.90 37.82 0.26 -2.24 16 15 C -0.04 -2.36 10.84 85.44 0.93 -1.43 16 16 N -0.31 -18.12 10.39 -56.43 -0.59 -18.71 16 17 N -0.16 -9.03 3.73 -189.98 -0.71 -9.74 16 18 C -0.35 -18.68 10.25 84.02 0.86 -17.82 16 19 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 20 C 0.00 -0.19 5.50 84.96 0.47 0.28 16 21 N -0.82 -46.57 11.81 21.66 0.26 -46.31 16 22 Si 1.02 38.19 29.55 68.60 2.03 40.22 16 23 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 24 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 26 C -0.08 -3.64 11.50 83.41 0.96 -2.69 16 27 C 0.08 1.84 4.98 87.37 0.44 2.28 16 28 C -0.11 -2.58 4.23 29.39 0.12 -2.45 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.91 6.38 -2.39 -0.02 0.89 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.07 1.01 7.82 -2.39 -0.02 0.99 16 34 H 0.08 1.03 7.64 -2.39 -0.02 1.01 16 35 H 0.04 0.80 7.48 -2.39 -0.02 0.78 16 36 H 0.08 0.80 7.31 -2.39 -0.02 0.78 16 37 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 1.62 6.94 -2.39 -0.02 1.60 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.42 13.60 8.31 -92.71 -0.77 12.82 16 41 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 42 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.18 6.97 8.06 -2.91 -0.02 6.95 16 44 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 45 H 0.11 3.04 4.88 -29.10 -0.14 2.90 16 46 H 0.08 1.77 6.13 -2.39 -0.01 1.76 16 47 H 0.03 0.94 7.83 -2.39 -0.02 0.92 16 Total: -1.00 -70.07 369.40 4.55 -65.52 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.10 Total: 41.72 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 7.05 Total: 4.48 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.55 Total: -113.56 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.08 Total: -38.38 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -70.07 4.55 -65.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746405766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds