Wall clock time and date at job start Tue Mar 31 2020 18:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.08999 * 109.46893 * 304.99911 * 3 2 1 5 5 C 1.52998 * 109.47129 * 64.99546 * 3 2 1 6 6 C 1.52995 * 109.47318 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47254 * 300.00184 * 6 5 3 8 8 C 1.53000 * 109.47309 * 59.99368 * 7 6 5 9 9 H 1.09001 * 109.46660 * 60.00673 * 8 7 6 10 10 N 1.46494 * 109.47154 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99928 * 275.00273 * 10 8 7 12 12 O 1.21359 * 120.00374 * 359.97438 * 11 10 8 13 13 C 1.49314 * 120.00044 * 180.02562 * 11 10 8 14 14 O 1.21408 * 119.99834 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00432 * 180.02562 * 13 11 10 16 16 C 1.40289 * 120.00449 * 179.97438 * 15 13 11 17 17 C 1.40727 * 126.09682 * 359.97252 * 16 15 13 18 18 N 1.30874 * 108.37237 * 179.77757 * 17 16 15 19 19 N 1.40059 * 108.43766 * 0.38281 * 18 17 16 20 20 C 1.37295 * 126.05604 * 179.88019 * 19 18 17 21 21 H 1.07997 * 120.00344 * 179.69126 * 20 19 18 22 22 C 1.39012 * 119.99781 * 359.41092 * 20 19 18 23 23 N 1.31281 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47298 * 60.00271 * 24 22 20 26 26 H 1.48508 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47384 * 300.00275 * 24 22 20 28 28 C 1.35785 * 126.10220 * 179.97438 * 16 15 13 29 29 C 1.52999 * 109.46999 * 184.99512 * 3 2 1 30 30 H 1.09002 * 109.46798 * 60.00648 * 1 2 3 31 31 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47782 * 300.00464 * 1 2 3 33 33 H 1.08996 * 109.47782 * 239.99535 * 2 1 3 34 34 H 1.09010 * 109.46996 * 119.99629 * 2 1 3 35 35 H 1.09006 * 109.47448 * 59.99984 * 5 3 2 36 36 H 1.09005 * 109.47265 * 300.00326 * 5 3 2 37 37 H 1.08998 * 109.47320 * 179.97438 * 6 5 3 38 38 H 1.09001 * 109.47320 * 59.99881 * 6 5 3 39 39 H 1.09006 * 109.46605 * 299.99613 * 7 6 5 40 40 H 1.08995 * 109.47768 * 179.97438 * 7 6 5 41 41 H 0.96997 * 120.00320 * 95.00453 * 10 8 7 42 42 H 0.96997 * 119.99363 * 359.97438 * 15 13 11 43 43 H 1.08003 * 125.81236 * 0.02908 * 17 16 15 44 44 H 0.97000 * 119.99476 * 179.97438 * 23 22 20 45 45 H 1.07999 * 126.24954 * 0.02562 * 28 16 15 46 46 H 1.08998 * 109.47201 * 60.00015 * 29 3 2 47 47 H 1.09004 * 109.47519 * 299.99493 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1446 3.5692 1.3070 7 6 3.6694 3.5716 1.1811 8 6 4.0743 2.8875 -0.1261 9 1 3.6395 3.4263 -0.9680 10 7 5.5343 2.8893 -0.2464 11 6 6.1667 3.9618 -0.7625 12 8 5.5266 4.9259 -1.1279 13 6 7.6547 3.9634 -0.8856 14 8 8.2951 2.9988 -0.5204 15 7 8.2872 5.0361 -1.4011 16 6 9.6853 5.0378 -1.5163 17 6 10.5499 3.9948 -1.1355 18 7 11.7785 4.3603 -1.3995 19 7 11.7492 5.6484 -1.9487 20 6 12.8386 6.3789 -2.3543 21 1 12.7022 7.3659 -2.7709 22 6 14.1176 5.8503 -2.2235 23 7 14.2838 4.6525 -1.7125 24 14 15.5999 6.8445 -2.7748 25 1 15.6567 8.1151 -2.0082 26 1 16.8389 6.0634 -2.5296 27 1 15.4827 7.1457 -4.2242 28 6 10.4458 6.0462 -2.0150 29 6 3.5648 1.4443 -0.1256 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0697 1.5876 2.1492 36 1 0.5488 2.1253 1.3968 37 1 1.8558 4.0567 2.2382 38 1 1.7097 4.1080 0.4652 39 1 4.1043 3.0329 2.0230 40 1 4.0324 4.5994 1.1805 41 1 6.0460 2.1186 0.0453 42 1 7.7755 5.8069 -1.6925 43 1 10.2502 3.0516 -0.7031 44 1 15.1763 4.2837 -1.6216 45 1 10.0848 6.9909 -2.3940 46 1 3.8533 0.9569 -1.0569 47 1 3.9994 0.9053 0.7163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746419302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:37 Heat of formation + Delta-G solvation = -13.683570 kcal Electronic energy + Delta-G solvation = -27976.521669 eV Core-core repulsion = 23967.193233 eV Total energy + Delta-G solvation = -4009.328436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.65206 -39.76562 -38.96049 -37.77385 -35.33786 -34.30315 -33.33910 -33.06228 -30.40915 -30.29689 -29.01778 -28.00213 -25.50091 -24.45742 -23.73835 -22.55819 -21.21519 -20.81082 -20.52876 -19.88110 -19.44745 -18.12121 -17.43798 -16.51442 -15.82587 -15.57696 -15.50239 -15.25482 -15.11737 -14.93597 -14.44026 -14.13109 -14.02050 -13.83971 -13.70023 -13.53963 -13.17185 -12.98272 -12.90925 -12.68626 -12.04672 -11.75463 -11.73532 -11.64561 -11.54634 -11.46898 -11.27193 -11.24324 -11.14198 -10.93570 -10.78053 -10.58359 -10.56749 -10.45937 -10.28453 -9.24469 -9.21785 -9.10058 -8.87448 -8.12990 -6.77878 -6.60382 -4.27814 1.66912 2.59956 2.94467 3.03621 3.07330 3.33477 3.71972 3.75246 3.95573 4.24817 4.34389 4.37951 4.49763 4.62282 4.71217 4.77296 4.87735 4.98131 5.00435 5.03493 5.08794 5.12988 5.21000 5.29673 5.32693 5.40879 5.57044 5.64378 5.71330 5.74793 5.78591 5.81462 5.93424 5.99864 6.01735 6.14415 6.20068 6.29698 6.36087 6.76023 6.88559 6.92538 7.16306 7.24944 7.76992 7.87166 8.11233 8.18532 8.49135 8.69676 9.31171 9.59848 10.35366 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.040237 B = 0.001820 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.714978 B =15383.221704 C =15729.491908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.083 4.083 4 H 0.073 0.927 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.145 3.855 9 H 0.090 0.910 10 N -0.702 5.702 11 C 0.516 3.484 12 O -0.529 6.529 13 C 0.483 3.517 14 O -0.523 6.523 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.077 4.077 29 C -0.123 4.123 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.412 0.588 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 -5.249 4.121 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.092 0.908 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.041 3.959 9 H 0.108 0.892 10 N -0.354 5.354 11 C 0.298 3.702 12 O -0.405 6.405 13 C 0.263 3.737 14 O -0.401 6.401 15 N -0.226 5.226 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 C -0.161 4.161 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.249 0.751 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.090 0.910 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.931 -5.748 4.212 23.060 hybrid contribution -0.260 0.783 -0.283 0.873 sum -22.192 -4.965 3.928 23.077 Atomic orbital electron populations 1.21820 0.95850 1.01523 1.01934 1.21561 0.95922 0.96064 1.02172 1.21130 0.94292 0.96260 0.98545 0.90835 1.21684 1.00772 0.95660 0.97352 1.21487 0.94992 0.96780 1.02161 1.21950 0.96161 1.01588 0.97300 1.21066 0.79017 0.96877 0.98944 0.89174 1.45814 1.07686 1.19165 1.62769 1.20293 0.88851 0.83197 0.77890 1.90723 1.67873 1.33767 1.48098 1.19690 0.87601 0.84304 0.82064 1.90654 1.66532 1.33983 1.48936 1.42149 1.05655 1.17362 1.57441 1.17259 0.81049 0.99405 1.19840 1.24145 0.89817 1.00119 1.06148 1.78258 1.17643 0.93838 1.19405 1.44553 1.03088 1.09673 1.33160 1.19882 0.82942 1.00215 1.42445 0.86476 1.25665 0.99586 0.96144 0.95717 1.70198 1.23906 1.13498 1.31798 0.85871 0.79179 0.79390 0.79590 1.19100 1.20087 1.19087 1.21303 0.85287 1.00603 1.15705 1.21890 0.95910 0.95284 1.03010 0.92766 0.92904 0.92467 0.91880 0.91890 0.91826 0.91600 0.91654 0.91712 0.91547 0.91225 0.75128 0.75610 0.80567 0.91299 0.83354 0.90998 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 37.16 0.36 -0.44 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.83 16 3 C -0.08 -0.53 2.19 -90.62 -0.20 -0.72 16 4 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 5 C -0.12 -0.72 4.96 -26.74 -0.13 -0.85 16 6 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 7 C -0.13 -1.20 5.49 -26.73 -0.15 -1.34 16 8 C 0.15 1.40 2.46 -67.91 -0.17 1.23 16 9 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 10 N -0.70 -8.32 5.07 -54.26 -0.28 -8.59 16 11 C 0.52 7.84 7.85 -11.65 -0.09 7.75 16 12 O -0.53 -8.72 16.14 5.49 0.09 -8.63 16 13 C 0.48 8.78 7.85 -11.65 -0.09 8.69 16 14 O -0.52 -10.61 13.62 5.45 0.07 -10.54 16 15 N -0.58 -11.11 5.45 -10.45 -0.06 -11.16 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 19 N -0.14 -3.76 3.73 -11.40 -0.04 -3.81 16 20 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.20 11.81 55.50 0.66 -20.54 16 24 Si 0.94 18.70 29.55 -169.99 -5.02 13.68 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 C -0.12 -0.90 4.67 -26.70 -0.12 -1.03 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.41 4.54 8.07 -40.82 -0.33 4.21 16 42 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 43 H 0.18 4.45 5.92 -52.48 -0.31 4.14 16 44 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -31.93 383.42 -7.67 -39.60 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.10 Total: 12.55 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.10 Total: -1.15 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.60 Total: -51.29 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.93 -7.67 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.914 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds